@jbrowse/plugin-wiggle 2.3.3 → 2.4.0

package/dist/MultiLinearWiggleDisplay/models/model.js.map

@@ -1 +1 @@
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package/dist/WiggleBaseRenderer.js

@@ -30,9 +30,9 @@ class WiggleBaseRenderer extends FeatureRendererType_1.default {
         return {
             ...results,
             ...rest,
-            features: (reducedFeatures
+            features: reducedFeatures
                 ? new Map(reducedFeatures.map((r) => [r.id(), r]))
-                : results.features),
+                : results.features,
             height,
             width,
             containsNoTransferables: true,

package/dist/WiggleBaseRenderer.js.map

@@ -1 +1 @@
-{"version":3,"file":"WiggleBaseRenderer.js","sourceRoot":"","sources":["../src/WiggleBaseRenderer.tsx"],"names":[],"mappings":";;;;;AAAA,4HAO0E;AAC1E,6CAAoE;AAmCpE,MAA8B,kBAAmB,SAAQ,6BAAmB;IAA5E;;QACE,gBAAW,GAAG,IAAI,CAAA;IAgDpB,CAAC;IA9CC,KAAK,CAAC,MAAM,CAAC,WAAmC;QAC9C,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,CAAC,WAAW,CAAC,CAAA;QACpD,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,GAAG,WAAW,CAAA;QAChD,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;QACxB,MAAM,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;QAEnD,aAAa;QACb,MAAM,EAAE,eAAe,EAAE,GAAG,IAAI,EAAE,GAAG,MAAM,IAAA,6BAAsB,EAC/D,KAAK,EACL,MAAM,EACN,WAAW,EACX,GAAG,CAAC,EAAE,CACJ,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE;YACb,GAAG,WAAW;YACd,QAAQ;SACT,CAAC,CACL,CAAA;QAED,MAAM,OAAO,GAAG,MAAM,KAAK,CAAC,MAAM,CAAC;YACjC,GAAG,WAAW;YACd,GAAG,IAAI;YACP,QAAQ;YACR,MAAM;YACN,KAAK;SACN,CAAC,CAAA;QAEF,OAAO;YACL,GAAG,OAAO;YACV,GAAG,IAAI;YACP,QAAQ,EAAE,CAAC,eAAe;gBACxB,CAAC,CAAC,IAAI,GAAG,CAAC,eAAe,CAAC,GAAG,CAAC,CAAC,CAAU,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC;gBAC3D,CAAC,CAAC,OAAO,CAAC,QAAQ,CAAyB;YAC7C,MAAM;YACN,KAAK;YACL,uBAAuB,EAAE,IAAI;SAC9B,CAAA;IACH,CAAC;CAUF;AAjDD,qCAiDC"}
+{"version":3,"file":"WiggleBaseRenderer.js","sourceRoot":"","sources":["../src/WiggleBaseRenderer.tsx"],"names":[],"mappings":";;;;;AAAA,4HAO0E;AAC1E,6CAAoE;AAmCpE,MAA8B,kBAAmB,SAAQ,6BAAmB;IAA5E;;QACE,gBAAW,GAAG,IAAI,CAAA;IAkDpB,CAAC;IAhDC,KAAK,CAAC,MAAM,CAAC,WAAmC;QAC9C,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,CAAC,WAAW,CAAC,CAAA;QACpD,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,GAAG,WAAW,CAAA;QAChD,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;QACxB,MAAM,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;QAEnD,aAAa;QACb,MAAM,EAAE,eAAe,EAAE,GAAG,IAAI,EAAE,GAAG,MAAM,IAAA,6BAAsB,EAC/D,KAAK,EACL,MAAM,EACN,WAAW,EACX,GAAG,CAAC,EAAE,CACJ,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE;YACb,GAAG,WAAW;YACd,QAAQ;SACT,CAAC,CACL,CAAA;QAED,MAAM,OAAO,GAAG,MAAM,KAAK,CAAC,MAAM,CAAC;YACjC,GAAG,WAAW;YACd,GAAG,IAAI;YACP,QAAQ;YACR,MAAM;YACN,KAAK;SACN,CAAC,CAAA;QAEF,OAAO;YACL,GAAG,OAAO;YACV,GAAG,IAAI;YACP,QAAQ,EAAE,eAAe;gBACvB,CAAC,CAAC,IAAI,GAAG,CACL,eAAe,CAAC,GAAG,CAAC,CAAC,CAAU,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,CAAC,CACjD;gBACH,CAAC,CAAC,OAAO,CAAC,QAAQ;YACpB,MAAM;YACN,KAAK;YACL,uBAAuB,EAAE,IAAI;SAC9B,CAAA;IACH,CAAC;CAUF;AAnDD,qCAmDC"}

package/dist/index.d.ts

@@ -16,7 +16,7 @@ export default class WigglePlugin extends Plugin {
                 id: string;
                 type: "LinearWiggleDisplay";
                 rpcDriverName: string | undefined;
-                height: number;
+                heightPreConfig: number | undefined;
                 blockState: import("mobx-state-tree").IMSTMap<import("mobx-state-tree").IModelType<{
                     key: import("mobx-state-tree").ISimpleType<string>;
                     region: import("mobx-state-tree").IModelType<{
@@ -191,6 +191,7 @@ export default class WigglePlugin extends Plugin {
                 estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
                 estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
+                readonly height: any;
                 readonly blockType: "dynamicBlocks" | "staticBlocks";
                 readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
             } & {
@@ -220,7 +221,7 @@ export default class WigglePlugin extends Plugin {
                 setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
                 setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
                 clearRegionStats(): void;
-                setHeight(displayHeight: number): number;
+                setHeight(displayHeight: number): any;
                 resizeHeight(distance: number): number;
                 setScrollTop(scrollTop: number): void;
                 updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
@@ -253,6 +254,7 @@ export default class WigglePlugin extends Plugin {
             } & {
                 renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
                     overrideHeight: number;
+                    theme: import("@mui/material").ThemeOptions;
                 }): Promise<JSX.Element>;
             } & {
                 message: string | undefined;
@@ -327,7 +329,7 @@ export default class WigglePlugin extends Plugin {
                 renderProps(): any;
                 readonly hasResolution: boolean;
                 readonly hasGlobalStats: boolean;
-                readonly fillSetting: 1 | 2 | 0;
+                readonly fillSetting: 2 | 0 | 1;
             } & {
                 trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
                     label: string;
@@ -352,13 +354,14 @@ export default class WigglePlugin extends Plugin {
                 afterAttach(): void;
                 renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
                     overrideHeight: number;
+                    theme: import("@mui/material").ThemeOptions;
                 }): Promise<JSX.Element>;
             } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
                 id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
                 type: import("mobx-state-tree").ISimpleType<string>;
                 rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
             } & {
-                height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
+                heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
                 blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
                     key: import("mobx-state-tree").ISimpleType<string>;
                     region: import("mobx-state-tree").IModelType<{
@@ -487,6 +490,7 @@ export default class WigglePlugin extends Plugin {
                 estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
                 estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
+                readonly height: any;
                 readonly blockType: "dynamicBlocks" | "staticBlocks";
                 readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
             } & {
@@ -516,7 +520,7 @@ export default class WigglePlugin extends Plugin {
                 setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
                 setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
                 clearRegionStats(): void;
-                setHeight(displayHeight: number): number;
+                setHeight(displayHeight: number): any;
                 resizeHeight(distance: number): number;
                 setScrollTop(scrollTop: number): void;
                 updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
@@ -549,6 +553,7 @@ export default class WigglePlugin extends Plugin {
             } & {
                 renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
                     overrideHeight: number;
+                    theme: import("@mui/material").ThemeOptions;
                 }): Promise<JSX.Element>;
             } & {
                 message: string | undefined;
@@ -623,7 +628,7 @@ export default class WigglePlugin extends Plugin {
                 renderProps(): any;
                 readonly hasResolution: boolean;
                 readonly hasGlobalStats: boolean;
-                readonly fillSetting: 1 | 2 | 0;
+                readonly fillSetting: 2 | 0 | 1;
             } & {
                 trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
                     label: string;
@@ -648,12 +653,69 @@ export default class WigglePlugin extends Plugin {
                 afterAttach(): void;
                 renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
                     overrideHeight: number;
+                    theme: import("@mui/material").ThemeOptions;
                 }): Promise<JSX.Element>;
-            }, import("mobx-state-tree")._NotCustomized, {
+            }, {
+                type: string;
+            } & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                type: import("mobx-state-tree").ISimpleType<string>;
+                rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+            } & {
+                heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+                blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
+                    key: import("mobx-state-tree").ISimpleType<string>;
+                    region: import("mobx-state-tree").IModelType<{
+                        refName: import("mobx-state-tree").ISimpleType<string>;
+                        start: import("mobx-state-tree").ISimpleType<number>;
+                        end: import("mobx-state-tree").ISimpleType<number>;
+                        reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                    } & {
+                        assemblyName: import("mobx-state-tree").ISimpleType<string>;
+                    }, {
+                        setRefName(newRefName: string): void;
+                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+                    reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
+                    isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+                    isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+                }, {
+                    renderInProgress: AbortController | undefined;
+                    filled: boolean;
+                    reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
+                    features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
+                    layout: any;
+                    status: string;
+                    error: unknown;
+                    message: string | undefined;
+                    maxHeightReached: boolean;
+                    ReactComponent: ({ model, }: {
+                        model: any;
+                    }) => any;
+                    renderProps: any;
+                } & {
+                    doReload(): void;
+                    afterAttach(): void;
+                    setStatus(message: string): void;
+                    setLoading(abortController: AbortController): void;
+                    setMessage(messageText: string): void;
+                    setRendered(props: {
+                        reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
+                        features: Map<string, import("@jbrowse/core/util").Feature>;
+                        layout: any;
+                        maxHeightReached: boolean;
+                        renderProps: any;
+                    } | undefined): void;
+                    setError(error: unknown): void;
+                    reload(): void;
+                    beforeDestroy(): void;
+                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+                userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+                userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+            }>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
                 type: string;
-                height: number;
                 id: string;
                 rpcDriverName: string | undefined;
+                heightPreConfig: number | undefined;
                 userBpPerPxLimit: number | undefined;
                 userByteSizeLimit: number | undefined;
             } & import("mobx-state-tree")._NotCustomized>>;

package/dist/shared/YScaleBar.d.ts

@@ -0,0 +1,9 @@
+/// <reference types="react" />
+import { axisPropsFromTickScale } from 'react-d3-axis-mod';
+declare const _default: ({ model, orientation, }: {
+    model: {
+        ticks?: ReturnType<typeof axisPropsFromTickScale>;
+    };
+    orientation?: string | undefined;
+}) => JSX.Element | null;
+export default _default;

package/dist/{MultiLinearWiggleDisplay/components → shared}/YScaleBar.js

@@ -4,11 +4,12 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importDefault(require("react"));
+const material_1 = require("@mui/material");
 const mobx_react_1 = require("mobx-react");
 const react_d3_axis_mod_1 = require("react-d3-axis-mod");
-const YScaleBar = (0, mobx_react_1.observer)(({ model, orientation, }) => {
+exports.default = (0, mobx_react_1.observer)(function ({ model, orientation, }) {
     const { ticks } = model;
-    return ticks ? (react_1.default.createElement(react_d3_axis_mod_1.Axis, { ...ticks, shadow: 2, format: (n) => n, style: { orient: orientation === 'left' ? react_d3_axis_mod_1.LEFT : react_d3_axis_mod_1.RIGHT } })) : null;
+    const theme = (0, material_1.useTheme)();
+    return ticks ? (react_1.default.createElement(react_d3_axis_mod_1.Axis, { ...ticks, shadow: 2, format: (n) => n, style: { orient: orientation === 'left' ? react_d3_axis_mod_1.LEFT : react_d3_axis_mod_1.RIGHT }, bg: theme.palette.background.default, fg: theme.palette.text.primary })) : null;
 });
-exports.default = YScaleBar;
 //# sourceMappingURL=YScaleBar.js.map

package/dist/shared/YScaleBar.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"YScaleBar.js","sourceRoot":"","sources":["../../src/shared/YScaleBar.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,4CAAwC;AACxC,2CAAqC;AACrC,yDAA6E;AAE7E,kBAAe,IAAA,qBAAQ,EAAC,UAAU,EAChC,KAAK,EACL,WAAW,GAIZ;IACC,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,KAAK,GAAG,IAAA,mBAAQ,GAAE,CAAA;IACxB,OAAO,KAAK,CAAC,CAAC,CAAC,CACb,8BAAC,wBAAI,OACC,KAAK,EACT,MAAM,EAAE,CAAC,EACT,MAAM,EAAE,CAAC,CAAS,EAAE,EAAE,CAAC,CAAC,EACxB,KAAK,EAAE,EAAE,MAAM,EAAE,WAAW,KAAK,MAAM,CAAC,CAAC,CAAC,wBAAI,CAAC,CAAC,CAAC,yBAAK,EAAE,EACxD,EAAE,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO,EACpC,EAAE,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,GAC9B,CACH,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CAAC,CAAA"}

package/dist/util.d.ts

@@ -30,7 +30,7 @@ export declare function getScale({ domain, range, scaleType, pivotValue, inverte
  *
  * @param scaleType -
  */
-export declare function getOrigin(scaleType: string): 1 | 0;
+export declare function getOrigin(scaleType: string): 0 | 1;
 /**
  * produces a "nice" domain that actually rounds down to 0 for the min
  * or 0 to the max depending on if all values are positive or negative

package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { WiggleDisplayModel } from '../models/model';
-import YScaleBar from './YScaleBar';
+import YScaleBar from '../../shared/YScaleBar';
 declare const LinearWiggleDisplay: (props: {
     model: WiggleDisplayModel;
 }) => JSX.Element;

package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js

@@ -3,7 +3,7 @@ import { observer } from 'mobx-react';
 import { measureText, getContainingView, getContainingTrack, } from '@jbrowse/core/util';
 import { getConf } from '@jbrowse/core/configuration';
 import { BaseLinearDisplayComponent, } from '@jbrowse/plugin-linear-genome-view';
-import YScaleBar from './YScaleBar';
+import YScaleBar from '../../shared/YScaleBar';
 const LinearWiggleDisplay = observer((props) => {
     const { model } = props;
     const { stats, height, needsScalebar } = model;

package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map

@@ -1 +1 @@
-{"version":3,"file":"WiggleDisplayComponent.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EACL,WAAW,EACX,iBAAiB,EACjB,kBAAkB,GACnB,MAAM,oBAAoB,CAAA;AAC3B,OAAO,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AACrD,OAAO,EACL,0BAA0B,GAE3B,MAAM,oCAAoC,CAAA;AAI3C,OAAO,SAAS,MAAM,aAAa,CAAA;AAInC,MAAM,mBAAmB,GAAG,QAAQ,CAAC,CAAC,KAAoC,EAAE,EAAE;IAC5E,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAE9C,MAAM,EAAE,WAAW,EAAE,GAAG,iBAAiB,CAAC,KAAK,CAAQ,CAAA;IACvD,MAAM,KAAK,GAAG,kBAAkB,CAAC,KAAK,CAAC,CAAA;IACvC,MAAM,IAAI,GACR,WAAW,KAAK,aAAa;QAC3B,CAAC,CAAC,WAAW,CAAC,OAAO,CAAC,KAAK,EAAE,MAAM,CAAC,EAAE,IAAI,CAAC,GAAG,GAAG;QACjD,CAAC,CAAC,EAAE,CAAA;IACR,OAAO,CACL;QACE,oBAAC,0BAA0B,OAAK,KAAK,GAAI;QACxC,KAAK,IAAI,aAAa,CAAC,CAAC,CAAC,CACxB,6BACE,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,CAAC;gBACN,IAAI;gBACJ,aAAa,EAAE,MAAM;gBACrB,MAAM;gBACN,KAAK,EAAE,EAAE;aACV;YAED,oBAAC,SAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CACvB,CACP,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,mBAAmB,CAAA;AAElC,OAAO,EAAE,SAAS,EAAE,CAAA"}
+{"version":3,"file":"WiggleDisplayComponent.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EACL,WAAW,EACX,iBAAiB,EACjB,kBAAkB,GACnB,MAAM,oBAAoB,CAAA;AAC3B,OAAO,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AACrD,OAAO,EACL,0BAA0B,GAE3B,MAAM,oCAAoC,CAAA;AAI3C,OAAO,SAAS,MAAM,wBAAwB,CAAA;AAI9C,MAAM,mBAAmB,GAAG,QAAQ,CAAC,CAAC,KAAoC,EAAE,EAAE;IAC5E,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAE9C,MAAM,EAAE,WAAW,EAAE,GAAG,iBAAiB,CAAC,KAAK,CAAQ,CAAA;IACvD,MAAM,KAAK,GAAG,kBAAkB,CAAC,KAAK,CAAC,CAAA;IACvC,MAAM,IAAI,GACR,WAAW,KAAK,aAAa;QAC3B,CAAC,CAAC,WAAW,CAAC,OAAO,CAAC,KAAK,EAAE,MAAM,CAAC,EAAE,IAAI,CAAC,GAAG,GAAG;QACjD,CAAC,CAAC,EAAE,CAAA;IACR,OAAO,CACL;QACE,oBAAC,0BAA0B,OAAK,KAAK,GAAI;QACxC,KAAK,IAAI,aAAa,CAAC,CAAC,CAAC,CACxB,6BACE,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,CAAC;gBACN,IAAI;gBACJ,aAAa,EAAE,MAAM;gBACrB,MAAM;gBACN,KAAK,EAAE,EAAE;aACV;YAED,oBAAC,SAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CACvB,CACP,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,mBAAmB,CAAA;AAElC,OAAO,EAAE,SAAS,EAAE,CAAA"}

package/esm/LinearWiggleDisplay/models/model.d.ts

@@ -12,22 +12,20 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     type: import("mobx-state-tree").ISimpleType<string>;
     rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
 } & {
-    height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>; /**
-     * #property
-     */
+    heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
     blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
         key: import("mobx-state-tree").ISimpleType<string>;
         region: import("mobx-state-tree").IModelType<{
             refName: import("mobx-state-tree").ISimpleType<string>;
             start: import("mobx-state-tree").ISimpleType<number>;
             end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>; /**
+             * #property
+             */
         } & {
             assemblyName: import("mobx-state-tree").ISimpleType<string>;
         }, {
-            setRefName(newRefName: string): void; /**
-             * #property
-             */
+            setRefName(newRefName: string): void;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
         reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
         isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
@@ -43,11 +41,15 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
         message: string | undefined;
         maxHeightReached: boolean;
         ReactComponent: ({ model, }: {
-            model: any;
+            model: any; /**
+             * #property
+             */
         }) => any;
         renderProps: any;
     } & {
-        doReload(): void;
+        doReload(): void; /**
+         * #property
+         */
         afterAttach(): void;
         setStatus(message: string): void;
         setLoading(abortController: AbortController): void;
@@ -158,14 +160,13 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
             type: string;
             rpcDriverName: string | undefined;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            /**
-             * #property
-             */
             rendererTypeName: string;
             error: unknown;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
+            type: import("mobx-state-tree").ISimpleType<string>; /**
+             * #property
+             */
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
             rendererTypeName: string;
@@ -175,13 +176,13 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     readonly adapterConfig: any;
     readonly parentTrack: any;
     renderProps(): any;
-    readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType; /**
-     * #action
-     */
+    readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
     readonly DisplayMessageComponent: React.FC<any> | undefined;
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
-    regionCannotBeRendered(): undefined;
+    regionCannotBeRendered(): undefined; /**
+     * #action
+     */
 } & {
     setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
@@ -195,6 +196,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
+    readonly height: any;
     readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
@@ -212,9 +214,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     readonly currentFeatureScreenDensity: number;
     readonly maxFeatureScreenDensity: any;
     readonly estimatedStatsReady: boolean;
-    readonly maxAllowableBytes: number; /**
-     * #getter
-     */
+    readonly maxAllowableBytes: number;
 } & {
     setMessage(message: string): void;
     afterAttach(): void;
@@ -226,7 +226,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
     setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
     clearRegionStats(): void;
-    setHeight(displayHeight: number): number;
+    setHeight(displayHeight: number): any;
     resizeHeight(distance: number): number;
     setScrollTop(scrollTop: number): void;
     updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
@@ -236,10 +236,10 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     selectFeature(feature: Feature): void;
     clearFeatureSelection(): void;
     setFeatureIdUnderMouse(feature: string | undefined): void;
-    reload(): void;
-    setContextMenuFeature(feature?: Feature | undefined): void; /**
+    reload(): void; /**
      * #method
      */
+    setContextMenuFeature(feature?: Feature | undefined): void;
 } & {
     readonly regionTooLarge: boolean;
     readonly regionTooLargeReason: string;
@@ -261,6 +261,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
 } & {
     renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
         overrideHeight: number;
+        theme: import("@mui/material").ThemeOptions;
     }): Promise<JSX.Element>;
 } & {
     message: string | undefined;
@@ -459,7 +460,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     /**
      * #getter
      */
-    readonly fillSetting: 1 | 2 | 0;
+    readonly fillSetting: 2 | 0 | 1;
 } & {
     /**
      * #method
@@ -494,12 +495,75 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
      */
     renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
         overrideHeight: number;
+        theme: import("@mui/material").ThemeOptions;
     }): Promise<JSX.Element>;
-}, import("mobx-state-tree")._NotCustomized, {
+}, {
+    type: string;
+} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("mobx-state-tree").ISimpleType<string>;
+    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+} & {
+    heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
+        key: import("mobx-state-tree").ISimpleType<string>;
+        region: import("mobx-state-tree").IModelType<{
+            refName: import("mobx-state-tree").ISimpleType<string>;
+            start: import("mobx-state-tree").ISimpleType<number>;
+            end: import("mobx-state-tree").ISimpleType<number>;
+            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>; /**
+             * #property
+             */
+        } & {
+            assemblyName: import("mobx-state-tree").ISimpleType<string>;
+        }, {
+            setRefName(newRefName: string): void;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+        reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
+        isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    }, {
+        renderInProgress: AbortController | undefined;
+        filled: boolean;
+        reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
+        features: Map<string, Feature> | undefined;
+        layout: any;
+        status: string;
+        error: unknown;
+        message: string | undefined;
+        maxHeightReached: boolean;
+        ReactComponent: ({ model, }: {
+            model: any; /**
+             * #property
+             */
+        }) => any;
+        renderProps: any;
+    } & {
+        doReload(): void; /**
+         * #property
+         */
+        afterAttach(): void;
+        setStatus(message: string): void;
+        setLoading(abortController: AbortController): void;
+        setMessage(messageText: string): void;
+        setRendered(props: {
+            reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>>;
+            features: Map<string, Feature>;
+            layout: any;
+            maxHeightReached: boolean;
+            renderProps: any;
+        } | undefined): void;
+        setError(error: unknown): void;
+        reload(): void;
+        beforeDestroy(): void;
+    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+}>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
     type: string;
-    height: number;
     id: string;
     rpcDriverName: string | undefined;
+    heightPreConfig: number | undefined;
     userBpPerPxLimit: number | undefined;
     userByteSizeLimit: number | undefined;
 } & import("mobx-state-tree")._NotCustomized>;

package/esm/LinearWiggleDisplay/models/model.js

@@ -7,7 +7,7 @@ import { isAlive, types } from 'mobx-state-tree';
 import { axisPropsFromTickScale } from 'react-d3-axis-mod';
 import { getNiceDomain, getScale, getStats, statsAutorun, YSCALEBAR_LABEL_OFFSET, } from '../../util';
 import Tooltip from '../components/Tooltip';
-import { YScaleBar } from '../components/WiggleDisplayComponent';
+import YScaleBar from '../../shared/YScaleBar';
 const SetMinMaxDlg = lazy(() => import('../../shared/SetMinMaxDialog'));
 const SetColorDlg = lazy(() => import('../components/SetColorDialog'));
 // using a map because it preserves order