@jbrowse/plugin-wiggle 2.2.2 → 2.3.0

package/src/MultiLinearWiggleDisplay/models/model.tsx

@@ -97,9 +97,8 @@ const stateModelFactory = (
       }),
     )
     .volatile(() => ({
-      statsReady: false,
       message: undefined as undefined | string,
-      stats: { scoreMin: 0, scoreMax: 50 },
+      stats: undefined as { scoreMin: number; scoreMax: number } | undefined,
       statsRegion: undefined as string | undefined,
       statsFetchInProgress: undefined as undefined | AbortController,
       featureUnderMouseVolatile: undefined as Feature | undefined,
@@ -115,12 +114,13 @@ const stateModelFactory = (
       updateStats(stats: { scoreMin: number; scoreMax: number }) {
         const { scoreMin, scoreMax } = stats
         const EPSILON = 0.000001
-        if (
+        if (!self.stats) {
+          self.stats = { scoreMin, scoreMax }
+        } else if (
           Math.abs(self.stats.scoreMax - scoreMax) > EPSILON ||
           Math.abs(self.stats.scoreMin - scoreMin) > EPSILON
         ) {
           self.stats = { scoreMin, scoreMax }
-          self.statsReady = true
         }
       },
       setSources(sources: Source[]) {
@@ -376,6 +376,9 @@ const stateModelFactory = (
         },
         get domain() {
           const { stats, scaleType, minScore, maxScore } = self
+          if (!stats) {
+            return undefined
+          }
           const { scoreMin, scoreMax } = stats
 
           const ret = getNiceDomain({
@@ -440,6 +443,10 @@ const stateModelFactory = (
         const { scaleType, domain, isMultiRow, rowHeight, useMinimalTicks } =
           self
 
+        if (!domain) {
+          return undefined
+        }
+
         const offset = isMultiRow ? 0 : YSCALEBAR_LABEL_OFFSET
         const ticks = axisPropsFromTickScale(
           getScale({
@@ -485,14 +492,14 @@ const stateModelFactory = (
             resolution,
             rpcDriverName,
             scaleOpts,
+            stats,
             sources,
-            statsReady,
             ticks,
             rendererConfig: config,
           } = self
           return {
             ...superProps,
-            notReady: superProps.notReady || !sources || !statsReady,
+            notReady: superProps.notReady || !sources || !stats,
             displayModel: self,
             config,
             displayCrossHatches,
@@ -702,7 +709,7 @@ const stateModelFactory = (
           )
         },
         async renderSvg(opts: ExportSvgOpts) {
-          await when(() => self.statsReady && !!self.regionCannotBeRenderedText)
+          await when(() => !!self.stats && !!self.regionCannotBeRenderedText)
           const { offsetPx } = getContainingView(self) as LGV
           return (
             <>

package/src/MultiQuantitativeTrack/index.ts

@@ -8,6 +8,7 @@ export default (pluginManager: PluginManager) => {
     const configSchema = configSchemaF(pluginManager)
     return new TrackType({
       name: 'MultiQuantitativeTrack',
+      displayName: 'Multi-quantitative track',
       configSchema,
       stateModel: createBaseTrackModel(
         pluginManager,

package/src/MultiWiggleAdapter/index.ts

@@ -7,12 +7,16 @@ export default (pluginManager: PluginManager) => {
     () =>
       new AdapterType({
         name: 'MultiWiggleAdapter',
+        displayName: 'Multi-wiggle adapter',
         configSchema,
         adapterCapabilities: [
           'hasResolution',
           'hasLocalStats',
           'hasGlobalStats',
         ],
+        adapterMetadata: {
+          hiddenFromGUI: true,
+        },
         getAdapterClass: () =>
           import('./MultiWiggleAdapter').then(r => r.default),
       }),

package/src/QuantitativeTrack/index.ts

@@ -8,6 +8,7 @@ export default (pluginManager: PluginManager) => {
     const configSchema = configSchemaF(pluginManager)
     return new TrackType({
       name: 'QuantitativeTrack',
+      displayName: 'Quantitative track',
       configSchema,
       stateModel: createBaseTrackModel(
         pluginManager,

package/src/drawxy.ts

@@ -5,6 +5,7 @@ import {
 import { clamp, featureSpanPx, Feature, Region } from '@jbrowse/core/util'
 import { getOrigin, getScale, ScaleOpts } from './util'
 
+// avoid drawing negative width features for SVG exports
 function fillRectCtx(
   x: number,
   y: number,

package/src/index.ts

@@ -112,10 +112,9 @@ export default class WigglePlugin extends Plugin {
     XYPlotRendererReactComponent,
     XYPlotRenderer,
     WiggleBaseRenderer,
-
+    linearWiggleDisplayModelFactory,
     xyPlotRendererConfigSchema,
     utils,
-    linearWiggleDisplayModelFactory,
   }
 }