@jbrowse/plugin-wiggle 2.2.1 → 2.2.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (54) hide show
  1. package/dist/LinearWiggleDisplay/components/SetColorDialog.js +3 -19
  2. package/dist/LinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  3. package/dist/LinearWiggleDisplay/models/model.d.ts +6 -1
  4. package/dist/LinearWiggleDisplay/models/model.js +1 -1
  5. package/dist/LinearWiggleDisplay/models/model.js.map +1 -1
  6. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +7 -0
  7. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js +43 -0
  8. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js.map +1 -0
  9. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +4 -22
  10. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  11. package/dist/MultiLinearWiggleDisplay/models/model.js +1 -1
  12. package/dist/MultiLinearWiggleDisplay/models/model.js.map +1 -1
  13. package/dist/WiggleRendering.js +1 -1
  14. package/dist/WiggleRendering.js.map +1 -1
  15. package/dist/{LinearWiggleDisplay/components → shared}/SetMinMaxDialog.d.ts +0 -0
  16. package/dist/shared/SetMinMaxDialog.js +53 -0
  17. package/dist/shared/SetMinMaxDialog.js.map +1 -0
  18. package/esm/LinearWiggleDisplay/components/SetColorDialog.js +4 -17
  19. package/esm/LinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  20. package/esm/LinearWiggleDisplay/models/model.d.ts +6 -1
  21. package/esm/LinearWiggleDisplay/models/model.js +1 -1
  22. package/esm/LinearWiggleDisplay/models/model.js.map +1 -1
  23. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +7 -0
  24. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js +38 -0
  25. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js.map +1 -0
  26. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +5 -23
  27. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  28. package/esm/MultiLinearWiggleDisplay/models/model.js +1 -1
  29. package/esm/MultiLinearWiggleDisplay/models/model.js.map +1 -1
  30. package/esm/WiggleRendering.js +1 -1
  31. package/esm/WiggleRendering.js.map +1 -1
  32. package/{dist/MultiLinearWiggleDisplay/components → esm/shared}/SetMinMaxDialog.d.ts +0 -0
  33. package/esm/shared/SetMinMaxDialog.js +27 -0
  34. package/esm/shared/SetMinMaxDialog.js.map +1 -0
  35. package/package.json +3 -3
  36. package/src/LinearWiggleDisplay/components/SetColorDialog.tsx +7 -27
  37. package/src/LinearWiggleDisplay/models/model.tsx +1 -1
  38. package/src/MultiLinearWiggleDisplay/components/DraggableDialog.tsx +71 -0
  39. package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +7 -41
  40. package/src/MultiLinearWiggleDisplay/models/model.tsx +1 -1
  41. package/src/WiggleRendering.tsx +1 -1
  42. package/src/shared/SetMinMaxDialog.tsx +88 -0
  43. package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js +0 -75
  44. package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js.map +0 -1
  45. package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js +0 -75
  46. package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js.map +0 -1
  47. package/esm/LinearWiggleDisplay/components/SetMinMaxDialog.d.ts +0 -11
  48. package/esm/LinearWiggleDisplay/components/SetMinMaxDialog.js +0 -46
  49. package/esm/LinearWiggleDisplay/components/SetMinMaxDialog.js.map +0 -1
  50. package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.d.ts +0 -11
  51. package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js +0 -46
  52. package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js.map +0 -1
  53. package/src/LinearWiggleDisplay/components/SetMinMaxDialog.tsx +0 -113
  54. package/src/MultiLinearWiggleDisplay/components/SetMinMaxDialog.tsx +0 -113
package/esm/LinearWiggleDisplay/models/model.js.map CHANGED
@@ -1 +1 @@
1
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package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts ADDED
@@ -0,0 +1,7 @@
1
+ /// <reference types="react" />
2
+ import { DialogProps } from '@mui/material';
3
+ declare function DraggableDialog(props: DialogProps & {
4
+ title: string;
5
+ }): JSX.Element;
6
+ declare const _default: typeof DraggableDialog;
7
+ export default _default;
package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js ADDED
@@ -0,0 +1,38 @@
1
+ import React from 'react';
2
+ import { Dialog, DialogTitle, IconButton, Divider, Paper, ScopedCssBaseline, } from '@mui/material';
3
+ import { observer } from 'mobx-react';
4
+ import { makeStyles } from 'tss-react/mui';
5
+ import Draggable from 'react-draggable';
6
+ // icons
7
+ import CloseIcon from '@mui/icons-material/Close';
8
+ const useStyles = makeStyles()(theme => ({
9
+ closeButton: {
10
+ position: 'absolute',
11
+ right: theme.spacing(1),
12
+ top: theme.spacing(1),
13
+ color: theme.palette.grey[500],
14
+ },
15
+ }));
16
+ // draggable dialog demo https://mui.com/material-ui/react-dialog/#draggable-dialog
17
+ function PaperComponent(props) {
18
+ return (React.createElement(Draggable, { handle: "#draggable-dialog-title", cancel: '[class*="MuiDialogContent-root"]' },
19
+ React.createElement(Paper, { ...props })));
20
+ }
21
+ function DraggableDialog(props) {
22
+ const { classes } = useStyles();
23
+ const { title, children, onClose } = props;
24
+ return (React.createElement(Dialog, { ...props, PaperComponent: PaperComponent, "aria-labelledby": "draggable-dialog-title" // this area is important for the draggable functionality
25
+ },
26
+ React.createElement(ScopedCssBaseline, null,
27
+ React.createElement(DialogTitle, { style: { cursor: 'move' }, id: "draggable-dialog-title" },
28
+ title,
29
+ onClose ? (React.createElement(IconButton, { className: classes.closeButton, onClick: () => {
30
+ // @ts-ignore
31
+ onClose();
32
+ } },
33
+ React.createElement(CloseIcon, null))) : null),
34
+ React.createElement(Divider, null),
35
+ children)));
36
+ }
37
+ export default observer(DraggableDialog);
38
+ //# sourceMappingURL=DraggableDialog.js.map
package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js.map ADDED
@@ -0,0 +1 @@
1
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package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js CHANGED
@@ -1,48 +1,30 @@
1
1
  import React, { useState } from 'react';
2
- import { Button, Dialog, DialogContent, DialogActions, DialogTitle, IconButton, Paper, } from '@mui/material';
2
+ import { Button, DialogContent, DialogActions } from '@mui/material';
3
3
  import { makeStyles } from 'tss-react/mui';
4
4
  import { getStr, isUriLocation, measureGridWidth, useLocalStorage, } from '@jbrowse/core/util';
5
5
  import { DataGrid } from '@mui/x-data-grid';
6
- import Draggable from 'react-draggable';
7
6
  import clone from 'clone';
8
7
  // locals
8
+ import DraggableDialog from './DraggableDialog';
9
9
  import ColorPicker, { ColorPopover } from '@jbrowse/core/ui/ColorPicker';
10
10
  import { UriLink } from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail';
11
11
  import { moveUp, moveDown } from './util';
12
12
  // icons
13
- import CloseIcon from '@mui/icons-material/Close';
14
13
  import KeyboardDoubleArrowUpIcon from '@mui/icons-material/KeyboardDoubleArrowUp';
15
14
  import KeyboardDoubleArrowDownIcon from '@mui/icons-material/KeyboardDoubleArrowDown';
16
15
  import KeyboardArrowDownIcon from '@mui/icons-material/KeyboardArrowDown';
17
16
  import KeyboardArrowUpIcon from '@mui/icons-material/KeyboardArrowUp';
18
- const useStyles = makeStyles()(theme => ({
19
- closeButton: {
20
- position: 'absolute',
21
- right: theme.spacing(1),
22
- top: theme.spacing(1),
23
- color: theme.palette.grey[500],
24
- },
17
+ const useStyles = makeStyles()({
25
18
  content: {
26
19
  minWidth: 800,
27
20
  },
28
- }));
29
- // draggable dialog demo https://mui.com/material-ui/react-dialog/#draggable-dialog
30
- function PaperComponent(props) {
31
- return (React.createElement(Draggable, { handle: "#draggable-dialog-title", cancel: '[class*="MuiDialogContent-root"]' },
32
- React.createElement(Paper, { ...props })));
33
- }
21
+ });
34
22
  export default function SetColorDialog({ model, handleClose, }) {
35
23
  const { classes } = useStyles();
36
24
  const { sources } = model;
37
25
  const [currLayout, setCurrLayout] = useState(clone(sources || []));
38
26
  const [showTips, setShowTips] = useLocalStorage('multiwiggle-showTips', true);
39
- return (React.createElement(Dialog, { PaperComponent: PaperComponent, open: true, onClose: handleClose, maxWidth: "xl", "aria-labelledby": "draggable-dialog-title" // this area is important for the draggable functionality
40
- },
41
- React.createElement(DialogTitle, { style: { cursor: 'move' }, id: "draggable-dialog-title" },
42
- "Multi-wiggle color/arrangement editor",
43
- ' ',
44
- React.createElement(IconButton, { className: classes.closeButton, onClick: handleClose },
45
- React.createElement(CloseIcon, null))),
27
+ return (React.createElement(DraggableDialog, { open: true, onClose: handleClose, maxWidth: "xl", title: 'Multi-wiggle color/arrangement editor' },
46
28
  React.createElement(DialogContent, { className: classes.content },
47
29
  React.createElement(Button, { variant: "contained", style: { float: 'right' }, onClick: () => setShowTips(!showTips) }, showTips ? 'Hide tips' : 'Show tips'),
48
30
  React.createElement("br", null),
package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map CHANGED
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1
+ 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package/esm/MultiLinearWiggleDisplay/models/model.js CHANGED
@@ -15,7 +15,7 @@ import Tooltip from '../components/Tooltip';
15
15
  import { StatBars } from '../components/WiggleDisplayComponent';
16
16
  const randomColor = () => '#000000'.replace(/0/g, () => (~~(Math.random() * 16)).toString(16));
17
17
  // lazt components
18
- const SetMinMaxDlg = lazy(() => import('../components/SetMinMaxDialog'));
18
+ const SetMinMaxDlg = lazy(() => import('../../shared/SetMinMaxDialog'));
19
19
  const SetColorDlg = lazy(() => import('../components/SetColorDialog'));
20
20
  // using a map because it preserves order
21
21
  const rendererTypes = new Map([
package/esm/MultiLinearWiggleDisplay/models/model.js.map CHANGED
@@ -1 +1 @@
1
- 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package/esm/WiggleRendering.js CHANGED
@@ -16,7 +16,7 @@ function WiggleRendering(props) {
16
16
  const clientBp = region.start + bpPerPx * px;
17
17
  let featureUnderMouse;
18
18
  for (const feature of features.values()) {
19
- // bpPerPx added to the end to accomodate "reduced features" (one feature per px)
19
+ // bpPerPx added to the end to accommodate "reduced features" (one feature per px)
20
20
  if (clientBp <= feature.get('end') + bpPerPx &&
21
21
  clientBp >= feature.get('start')) {
22
22
  featureUnderMouse = feature;
package/esm/WiggleRendering.js.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"WiggleRendering.js","sourceRoot":"","sources":["../src/WiggleRendering.tsx"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,KAAK,EAAE,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAIrC,OAAO,EAAE,iBAAiB,EAAE,MAAM,kBAAkB,CAAA;AAEpD,SAAS,eAAe,CAAC,KAUxB;IACC,MAAM,EACJ,OAAO,EACP,QAAQ,EACR,OAAO,EACP,KAAK,EACL,MAAM,EACN,YAAY,GAAG,GAAG,EAAE,GAAE,CAAC,EACvB,WAAW,GAAG,GAAG,EAAE,GAAE,CAAC,EACtB,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,GAC1B,GAAG,KAAK,CAAA;IACT,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;IACxB,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IAExC,SAAS,oBAAoB,CAAC,YAAoB;QAChD,iCAAiC;QACjC,IAAI,MAAM,GAAG,CAAC,CAAA;QACd,IAAI,GAAG,CAAC,OAAO,EAAE;YACf,MAAM,GAAG,GAAG,CAAC,OAAO,CAAC,qBAAqB,EAAE,CAAC,IAAI,CAAA;SAClD;QACD,MAAM,OAAO,GAAG,YAAY,GAAG,MAAM,CAAA;QACrC,MAAM,EAAE,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,GAAG,OAAO,CAAC,CAAC,CAAC,OAAO,CAAA;QACtD,MAAM,QAAQ,GAAG,MAAM,CAAC,KAAK,GAAG,OAAO,GAAG,EAAE,CAAA;QAC5C,IAAI,iBAAiB,CAAA;QACrB,KAAK,MAAM,OAAO,IAAI,QAAQ,CAAC,MAAM,EAAE,EAAE;YACvC,kFAAkF;YAClF,IACE,QAAQ,IAAI,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,OAAO;gBACxC,QAAQ,IAAI,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,EAChC;gBACA,iBAAiB,GAAG,OAAO,CAAA;gBAC3B,MAAK;aACN;SACF;QACD,OAAO,iBAAiB,CAAA;IAC1B,CAAC;IACD,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,iBACI,uBAAuB,EACnC,WAAW,EAAE,KAAK,CAAC,EAAE,WACnB,OAAA,WAAW,CAAC,KAAK,EAAE,MAAA,oBAAoB,CAAC,KAAK,CAAC,OAAO,CAAC,0CAAE,EAAE,EAAE,CAAC,CAAA,EAAA,EAE/D,OAAO,EAAE,KAAK,CAAC,EAAE,WACf,OAAA,cAAc,CAAC,KAAK,EAAE,MAAA,oBAAoB,CAAC,KAAK,CAAC,OAAO,CAAC,0CAAE,EAAE,EAAE,CAAC,CAAA,EAAA,EAElE,YAAY,EAAE,KAAK,CAAC,EAAE,CAAC,YAAY,CAAC,KAAK,CAAC,EAC1C,KAAK,EAAE;YACL,QAAQ,EAAE,SAAS;YACnB,QAAQ,EAAE,UAAU;YACpB,MAAM;SACP;QAED,oBAAC,iBAAiB,OAAK,KAAK,GAAI,CAC5B,CACP,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,eAAe,CAAC,CAAA"}
package/esm/shared/SetMinMaxDialog.js ADDED
@@ -0,0 +1,27 @@
1
+ import React, { useState } from 'react';
2
+ import { Button, DialogActions, DialogContent, TextField, Typography, } from '@mui/material';
3
+ import { Dialog } from '@jbrowse/core/ui';
4
+ export default function SetMinMaxDlg(props) {
5
+ const { model, handleClose } = props;
6
+ const { minScore, maxScore, scaleType } = model;
7
+ const [min, setMin] = useState(`${minScore !== Number.MIN_VALUE ? minScore : ''}`);
8
+ const [max, setMax] = useState(`${maxScore !== Number.MAX_VALUE ? maxScore : ''}`);
9
+ const ok = min !== '' && max !== '' && !Number.isNaN(+min) && !Number.isNaN(+max)
10
+ ? +max > +min
11
+ : true;
12
+ const logOk = scaleType === 'log' && min !== '' && !Number.isNaN(+min) ? +min > 0 : true;
13
+ return (React.createElement(Dialog, { open: true, onClose: handleClose, title: "Set min/max score for track" },
14
+ React.createElement(DialogContent, null,
15
+ React.createElement(Typography, null, "Enter min/max score: "),
16
+ !ok ? (React.createElement(Typography, { color: "error" }, "Max is greater than or equal to min")) : null,
17
+ !logOk ? (React.createElement(Typography, { color: "error" }, "Min score should be greater than 0 for log scale")) : null,
18
+ React.createElement(TextField, { value: min, onChange: event => setMin(event.target.value), placeholder: "Enter min score" }),
19
+ React.createElement(TextField, { value: max, onChange: event => setMax(event.target.value), placeholder: "Enter max score" })),
20
+ React.createElement(DialogActions, null,
21
+ React.createElement(Button, { variant: "contained", color: "primary", type: "submit", style: { marginLeft: 20 }, disabled: !ok, onClick: () => {
22
+ model.setMinScore(min !== '' && !Number.isNaN(+min) ? +min : undefined);
23
+ model.setMaxScore(max !== '' && !Number.isNaN(+max) ? +max : undefined);
24
+ handleClose();
25
+ } }, "Submit"))));
26
+ }
27
+ //# sourceMappingURL=SetMinMaxDialog.js.map
package/esm/shared/SetMinMaxDialog.js.map ADDED
@@ -0,0 +1 @@
1
+ {"version":3,"file":"SetMinMaxDialog.js","sourceRoot":"","sources":["../../src/shared/SetMinMaxDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AAEzC,MAAM,CAAC,OAAO,UAAU,YAAY,CAAC,KASpC;IACC,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACpC,MAAM,EAAE,QAAQ,EAAE,QAAQ,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;IAE/C,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,QAAQ,CAC5B,GAAG,QAAQ,KAAK,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,EAAE,CACnD,CAAA;IACD,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,QAAQ,CAC5B,GAAG,QAAQ,KAAK,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,EAAE,CACnD,CAAA;IAED,MAAM,EAAE,GACN,GAAG,KAAK,EAAE,IAAI,GAAG,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC;QACpE,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,GAAG;QACb,CAAC,CAAC,IAAI,CAAA;IAEV,MAAM,KAAK,GACT,SAAS,KAAK,KAAK,IAAI,GAAG,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAA;IAE5E,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,KAAK,EAAC,6BAA6B;QACpE,oBAAC,aAAa;YACZ,oBAAC,UAAU,gCAAmC;YAC7C,CAAC,EAAE,CAAC,CAAC,CAAC,CACL,oBAAC,UAAU,IAAC,KAAK,EAAC,OAAO,0CAEZ,CACd,CAAC,CAAC,CAAC,IAAI;YAEP,CAAC,KAAK,CAAC,CAAC,CAAC,CACR,oBAAC,UAAU,IAAC,KAAK,EAAC,OAAO,uDAEZ,CACd,CAAC,CAAC,CAAC,IAAI;YAER,oBAAC,SAAS,IACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC7C,WAAW,EAAC,iBAAiB,GAC7B;YACF,oBAAC,SAAS,IACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC7C,WAAW,EAAC,iBAAiB,GAC7B,CACY;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,IAAI,EAAC,QAAQ,EACb,KAAK,EAAE,EAAE,UAAU,EAAE,EAAE,EAAE,EACzB,QAAQ,EAAE,CAAC,EAAE,EACb,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CACf,GAAG,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CACrD,CAAA;oBACD,KAAK,CAAC,WAAW,CACf,GAAG,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CACrD,CAAA;oBACD,WAAW,EAAE,CAAA;gBACf,CAAC,aAGM,CACK,CACT,CACV,CAAA;AACH,CAAC"}
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-wiggle",
3
- "version": "2.2.1",
3
+ "version": "2.2.2",
4
4
  "description": "JBrowse 2 wiggle adapters, tracks, etc.",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -27,7 +27,7 @@
27
27
  "build": "npm-run-all build:*",
28
28
  "test": "cd ../..; jest plugins/wiggle",
29
29
  "prepublishOnly": "yarn test",
30
- "prepack": "yarn build; yarn useDist",
30
+ "prepack": "yarn build && yarn useDist",
31
31
  "postpack": "yarn useSrc",
32
32
  "useDist": "node ../../scripts/useDist.js",
33
33
  "useSrc": "node ../../scripts/useSrc.js",
@@ -70,5 +70,5 @@
70
70
  "distModule": "esm/index.js",
71
71
  "srcModule": "src/index.ts",
72
72
  "module": "esm/index.js",
73
- "gitHead": "896d175c5d9345049faea8e1155f243c912aac42"
73
+ "gitHead": "abbc00e8feedbc58de84a7a3e735ec0224909b29"
74
74
  }
package/src/LinearWiggleDisplay/components/SetColorDialog.tsx CHANGED
@@ -2,28 +2,15 @@ import React, { useState } from 'react'
2
2
  import { observer } from 'mobx-react'
3
3
  import {
4
4
  Button,
5
- Dialog,
6
5
  DialogContent,
7
6
  DialogActions,
8
- DialogTitle,
9
7
  FormControlLabel,
10
- IconButton,
11
8
  Radio,
12
9
  Typography,
13
10
  } from '@mui/material'
14
- import { makeStyles } from 'tss-react/mui'
15
- import CloseIcon from '@mui/icons-material/Close'
11
+ import { Dialog } from '@jbrowse/core/ui'
16
12
  import { ColorPicker } from '@jbrowse/core/ui/ColorPicker'
17
13
 
18
- const useStyles = makeStyles()(theme => ({
19
- closeButton: {
20
- position: 'absolute',
21
- right: theme.spacing(1),
22
- top: theme.spacing(1),
23
- color: theme.palette.grey[500],
24
- },
25
- }))
26
-
27
14
  function SetColorDialog({
28
15
  model,
29
16
  handleClose,
@@ -38,23 +25,16 @@ function SetColorDialog({
38
25
  }
39
26
  handleClose: () => void
40
27
  }) {
41
- const { classes } = useStyles()
42
28
  const [posneg, setPosNeg] = useState(false)
43
29
 
44
30
  return (
45
- <Dialog open onClose={handleClose}>
46
- <DialogTitle>
47
- Select either an overall color, or the positive/negative colors. Note
48
- that density renderers only work properly with positive/negative colors
49
- <IconButton
50
- aria-label="close"
51
- className={classes.closeButton}
52
- onClick={handleClose}
53
- >
54
- <CloseIcon />
55
- </IconButton>
56
- </DialogTitle>
31
+ <Dialog open onClose={handleClose} title="Set color">
57
32
  <DialogContent>
33
+ <Typography>
34
+ Select either an overall color, or the positive/negative colors. Note
35
+ that density renderers only work properly with positive/negative
36
+ colors
37
+ </Typography>
58
38
  <FormControlLabel
59
39
  checked={!posneg}
60
40
  onClick={() => setPosNeg(false)}
package/src/LinearWiggleDisplay/models/model.tsx CHANGED
@@ -32,7 +32,7 @@ import {
32
32
  import Tooltip from '../components/Tooltip'
33
33
  import { YScaleBar } from '../components/WiggleDisplayComponent'
34
34
 
35
- const SetMinMaxDlg = lazy(() => import('../components/SetMinMaxDialog'))
35
+ const SetMinMaxDlg = lazy(() => import('../../shared/SetMinMaxDialog'))
36
36
  const SetColorDlg = lazy(() => import('../components/SetColorDialog'))
37
37
 
38
38
  // using a map because it preserves order
package/src/MultiLinearWiggleDisplay/components/DraggableDialog.tsx ADDED
@@ -0,0 +1,71 @@
1
+ import React from 'react'
2
+ import {
3
+ Dialog,
4
+ DialogTitle,
5
+ IconButton,
6
+ Divider,
7
+ DialogProps,
8
+ Paper,
9
+ PaperProps,
10
+ ScopedCssBaseline,
11
+ } from '@mui/material'
12
+ import { observer } from 'mobx-react'
13
+ import { makeStyles } from 'tss-react/mui'
14
+ import Draggable from 'react-draggable'
15
+
16
+ // icons
17
+ import CloseIcon from '@mui/icons-material/Close'
18
+
19
+ const useStyles = makeStyles()(theme => ({
20
+ closeButton: {
21
+ position: 'absolute',
22
+ right: theme.spacing(1),
23
+ top: theme.spacing(1),
24
+ color: theme.palette.grey[500],
25
+ },
26
+ }))
27
+
28
+ // draggable dialog demo https://mui.com/material-ui/react-dialog/#draggable-dialog
29
+ function PaperComponent(props: PaperProps) {
30
+ return (
31
+ <Draggable
32
+ handle="#draggable-dialog-title"
33
+ cancel={'[class*="MuiDialogContent-root"]'}
34
+ >
35
+ <Paper {...props} />
36
+ </Draggable>
37
+ )
38
+ }
39
+
40
+ function DraggableDialog(props: DialogProps & { title: string }) {
41
+ const { classes } = useStyles()
42
+ const { title, children, onClose } = props
43
+
44
+ return (
45
+ <Dialog
46
+ {...props}
47
+ PaperComponent={PaperComponent}
48
+ aria-labelledby="draggable-dialog-title" // this area is important for the draggable functionality
49
+ >
50
+ <ScopedCssBaseline>
51
+ <DialogTitle style={{ cursor: 'move' }} id="draggable-dialog-title">
52
+ {title}
53
+ {onClose ? (
54
+ <IconButton
55
+ className={classes.closeButton}
56
+ onClick={() => {
57
+ // @ts-ignore
58
+ onClose()
59
+ }}
60
+ >
61
+ <CloseIcon />
62
+ </IconButton>
63
+ ) : null}
64
+ </DialogTitle>
65
+ <Divider />
66
+ {children}
67
+ </ScopedCssBaseline>
68
+ </Dialog>
69
+ )
70
+ }
71
+ export default observer(DraggableDialog)
package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx CHANGED
@@ -1,14 +1,5 @@
1
1
  import React, { useState } from 'react'
2
- import {
3
- Button,
4
- Dialog,
5
- DialogContent,
6
- DialogActions,
7
- DialogTitle,
8
- IconButton,
9
- Paper,
10
- PaperProps,
11
- } from '@mui/material'
2
+ import { Button, DialogContent, DialogActions } from '@mui/material'
12
3
  import { makeStyles } from 'tss-react/mui'
13
4
  import {
14
5
  getStr,
@@ -17,45 +8,27 @@ import {
17
8
  useLocalStorage,
18
9
  } from '@jbrowse/core/util'
19
10
  import { DataGrid, GridCellParams } from '@mui/x-data-grid'
20
- import Draggable from 'react-draggable'
21
11
  import clone from 'clone'
22
12
 
23
13
  // locals
14
+ import DraggableDialog from './DraggableDialog'
24
15
  import ColorPicker, { ColorPopover } from '@jbrowse/core/ui/ColorPicker'
25
16
  import { UriLink } from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail'
26
17
  import { moveUp, moveDown } from './util'
27
18
  import { Source } from '../../util'
28
19
 
29
20
  // icons
30
- import CloseIcon from '@mui/icons-material/Close'
31
21
  import KeyboardDoubleArrowUpIcon from '@mui/icons-material/KeyboardDoubleArrowUp'
32
22
  import KeyboardDoubleArrowDownIcon from '@mui/icons-material/KeyboardDoubleArrowDown'
33
23
  import KeyboardArrowDownIcon from '@mui/icons-material/KeyboardArrowDown'
34
24
  import KeyboardArrowUpIcon from '@mui/icons-material/KeyboardArrowUp'
35
25
 
36
- const useStyles = makeStyles()(theme => ({
37
- closeButton: {
38
- position: 'absolute',
39
- right: theme.spacing(1),
40
- top: theme.spacing(1),
41
- color: theme.palette.grey[500],
42
- },
26
+ const useStyles = makeStyles()({
43
27
  content: {
44
28
  minWidth: 800,
45
29
  },
46
- }))
30
+ })
47
31
 
48
- // draggable dialog demo https://mui.com/material-ui/react-dialog/#draggable-dialog
49
- function PaperComponent(props: PaperProps) {
50
- return (
51
- <Draggable
52
- handle="#draggable-dialog-title"
53
- cancel={'[class*="MuiDialogContent-root"]'}
54
- >
55
- <Paper {...props} />
56
- </Draggable>
57
- )
58
- }
59
32
  export default function SetColorDialog({
60
33
  model,
61
34
  handleClose,
@@ -72,19 +45,12 @@ export default function SetColorDialog({
72
45
  const [currLayout, setCurrLayout] = useState(clone(sources || []))
73
46
  const [showTips, setShowTips] = useLocalStorage('multiwiggle-showTips', true)
74
47
  return (
75
- <Dialog
76
- PaperComponent={PaperComponent}
48
+ <DraggableDialog
77
49
  open
78
50
  onClose={handleClose}
79
51
  maxWidth="xl"
80
- aria-labelledby="draggable-dialog-title" // this area is important for the draggable functionality
52
+ title={'Multi-wiggle color/arrangement editor'}
81
53
  >
82
- <DialogTitle style={{ cursor: 'move' }} id="draggable-dialog-title">
83
- Multi-wiggle color/arrangement editor{' '}
84
- <IconButton className={classes.closeButton} onClick={handleClose}>
85
- <CloseIcon />
86
- </IconButton>
87
- </DialogTitle>
88
54
  <DialogContent className={classes.content}>
89
55
  <Button
90
56
  variant="contained"
@@ -159,7 +125,7 @@ export default function SetColorDialog({
159
125
  Submit
160
126
  </Button>
161
127
  </DialogActions>
162
- </Dialog>
128
+ </DraggableDialog>
163
129
  )
164
130
  }
165
131