npm - @jbrowse/plugin-wiggle - Versions diffs - 2.2.0 → 2.2.2 - Mend

@jbrowse/plugin-wiggle 2.2.0 → 2.2.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (68) hide show

package/dist/shared/SetMinMaxDialog.js ADDED Viewed

@@ -0,0 +1,53 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importStar(require("react"));
+const material_1 = require("@mui/material");
+const ui_1 = require("@jbrowse/core/ui");
+function SetMinMaxDlg(props) {
+    const { model, handleClose } = props;
+    const { minScore, maxScore, scaleType } = model;
+    const [min, setMin] = (0, react_1.useState)(`${minScore !== Number.MIN_VALUE ? minScore : ''}`);
+    const [max, setMax] = (0, react_1.useState)(`${maxScore !== Number.MAX_VALUE ? maxScore : ''}`);
+    const ok = min !== '' && max !== '' && !Number.isNaN(+min) && !Number.isNaN(+max)
+        ? +max > +min
+        : true;
+    const logOk = scaleType === 'log' && min !== '' && !Number.isNaN(+min) ? +min > 0 : true;
+    return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: handleClose, title: "Set min/max score for track" },
+        react_1.default.createElement(material_1.DialogContent, null,
+            react_1.default.createElement(material_1.Typography, null, "Enter min/max score: "),
+            !ok ? (react_1.default.createElement(material_1.Typography, { color: "error" }, "Max is greater than or equal to min")) : null,
+            !logOk ? (react_1.default.createElement(material_1.Typography, { color: "error" }, "Min score should be greater than 0 for log scale")) : null,
+            react_1.default.createElement(material_1.TextField, { value: min, onChange: event => setMin(event.target.value), placeholder: "Enter min score" }),
+            react_1.default.createElement(material_1.TextField, { value: max, onChange: event => setMax(event.target.value), placeholder: "Enter max score" })),
+        react_1.default.createElement(material_1.DialogActions, null,
+            react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", type: "submit", style: { marginLeft: 20 }, disabled: !ok, onClick: () => {
+                    model.setMinScore(min !== '' && !Number.isNaN(+min) ? +min : undefined);
+                    model.setMaxScore(max !== '' && !Number.isNaN(+max) ? +max : undefined);
+                    handleClose();
+                } }, "Submit"))));
+}
+exports.default = SetMinMaxDlg;
+//# sourceMappingURL=SetMinMaxDialog.js.map

package/dist/shared/SetMinMaxDialog.js.map ADDED Viewed

@@ -0,0 +1 @@

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package/esm/LinearWiggleDisplay/components/SetColorDialog.js CHANGED Viewed

@@ -1,26 +1,13 @@
 import React, { useState } from 'react';
 import { observer } from 'mobx-react';
-import { Button, Dialog, DialogContent, DialogActions, DialogTitle, FormControlLabel, IconButton, Radio, Typography, } from '@mui/material';
-import { makeStyles } from 'tss-react/mui';
-import CloseIcon from '@mui/icons-material/Close';
+import { Button, DialogContent, DialogActions, FormControlLabel, Radio, Typography, } from '@mui/material';
+import { Dialog } from '@jbrowse/core/ui';
 import { ColorPicker } from '@jbrowse/core/ui/ColorPicker';
-const useStyles = makeStyles()(theme => ({
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
-}));
 function SetColorDialog({ model, handleClose, }) {
-    const { classes } = useStyles();
     const [posneg, setPosNeg] = useState(false);
-    return (React.createElement(Dialog, { open: true, onClose: handleClose },
-        React.createElement(DialogTitle, null,
-            "Select either an overall color, or the positive/negative colors. Note that density renderers only work properly with positive/negative colors",
-            React.createElement(IconButton, { "aria-label": "close", className: classes.closeButton, onClick: handleClose },
-                React.createElement(CloseIcon, null))),
+    return (React.createElement(Dialog, { open: true, onClose: handleClose, title: "Set color" },
         React.createElement(DialogContent, null,
+            React.createElement(Typography, null, "Select either an overall color, or the positive/negative colors. Note that density renderers only work properly with positive/negative colors"),
             React.createElement(FormControlLabel, { checked: !posneg, onClick: () => setPosNeg(false), control: React.createElement(Radio, null), label: 'Overall color' }),
             React.createElement(FormControlLabel, { checked: posneg, onClick: () => setPosNeg(true), control: React.createElement(Radio, null), label: 'Positive/negative color' }),
             posneg ? (React.createElement(React.Fragment, null,

package/esm/LinearWiggleDisplay/components/SetColorDialog.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/LinearWiggleDisplay/components/Tooltip.d.ts CHANGED Viewed

@@ -4,7 +4,7 @@ import Tooltip, { TooltipContentsComponent } from '../../Tooltip';
 declare const TooltipContents: React.ForwardRefExoticComponent<{
     feature: Feature;
 } & React.RefAttributes<HTMLDivElement>>;
-declare type Coord = [number, number];
+type Coord = [number, number];
 declare const WiggleTooltip: (props: {
     model: {
         featureUnderMouse: Feature;

package/esm/LinearWiggleDisplay/models/model.d.ts CHANGED Viewed

@@ -1,8 +1,8 @@
 import React from 'react';
 import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
+import { Feature } from '@jbrowse/core/util';
 import { Instance } from 'mobx-state-tree';
 import PluginManager from '@jbrowse/core/PluginManager';
-import { Feature } from '@jbrowse/core/util/simpleFeature';
 /**
  * #stateModel LinearWiggleDisplay
  * Extends `BaseLinearDisplay`
@@ -23,34 +23,36 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
         } & {
             assemblyName: import("mobx-state-tree").ISimpleType<string>;
         }, {
-            setRefName(newRefName: string): void;
+            setRefName(newRefName: string): void; /**
+             * #property
+             */
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
         reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
         isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     }, {
-        renderInProgress: AbortController | undefined; /**
-         * #property
-         */
+        renderInProgress: AbortController | undefined;
         filled: boolean;
         reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
         features: Map<string, Feature> | undefined;
-        layout: any; /**
-         * #property
-         */
+        layout: any;
         status: string;
         error: unknown;
-        message: string | undefined; /**
+        message: string | undefined;
+        maxHeightReached: boolean; /**
          * #property
          */
-        maxHeightReached: boolean;
         ReactComponent: ({ model, }: {
-            model: any;
+            model: any; /**
+             * #property
+             */
         }) => any;
         renderProps: any;
     } & {
         doReload(): void;
-        afterAttach(): void;
+        afterAttach(): void; /**
+         * #property
+         */
         setStatus(message: string): void;
         setLoading(abortController: AbortController): void;
         setMessage(messageText: string): void;
@@ -160,6 +162,9 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
             type: string;
             rpcDriverName: string | undefined;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            /**
+             * #property
+             */
             rendererTypeName: string;
             error: unknown;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
@@ -177,15 +182,13 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
     readonly DisplayMessageComponent: React.FC<any> | undefined;
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-    readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[]; /**
-     * #action
-     */
+    readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
     regionCannotBeRendered(): undefined;
 } & {
-    setError(error?: unknown): void;
-    setRpcDriverName(rpcDriverName: string): void; /**
+    setError(error?: unknown): void; /**
      * #action
      */
+    setRpcDriverName(rpcDriverName: string): void;
     reload(): void;
 } & {
     currBpPerPx: number;
@@ -211,7 +214,9 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     searchFeatureByID(id: string): [number, number, number, number] | undefined;
     readonly currentBytesRequested: number;
     readonly currentFeatureScreenDensity: number;
-    readonly maxFeatureScreenDensity: any;
+    readonly maxFeatureScreenDensity: any; /**
+     * #getter
+     */
     readonly estimatedStatsReady: boolean;
     readonly maxAllowableBytes: number;
 } & {
@@ -229,9 +234,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     resizeHeight(distance: number): number;
     setScrollTop(scrollTop: number): void;
     updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
-    addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void; /**
-     * #getter
-     */
+    addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
     setCurrBpPerPx(n: number): void;
     deleteBlock(key: string): void;
     selectFeature(feature: Feature): void;
@@ -459,7 +462,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     /**
      * #getter
      */
-    readonly fillSetting: 2 | 1 | 0;
+    readonly fillSetting: 1 | 2 | 0;
 } & {
     /**
      * #method
@@ -503,6 +506,6 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     userBpPerPxLimit: number | undefined;
     userByteSizeLimit: number | undefined;
 } & import("mobx-state-tree")._NotCustomized>;
-export declare type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
-export declare type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
+export type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
+export type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
 export default stateModelFactory;

package/esm/LinearWiggleDisplay/models/model.js CHANGED Viewed

@@ -8,7 +8,7 @@ import { axisPropsFromTickScale } from 'react-d3-axis-mod';
 import { getNiceDomain, getScale, getStats, statsAutorun, YSCALEBAR_LABEL_OFFSET, } from '../../util';
 import Tooltip from '../components/Tooltip';
 import { YScaleBar } from '../components/WiggleDisplayComponent';
-const SetMinMaxDlg = lazy(() => import('../components/SetMinMaxDialog'));
+const SetMinMaxDlg = lazy(() => import('../../shared/SetMinMaxDialog'));
 const SetColorDlg = lazy(() => import('../components/SetColorDialog'));
 // using a map because it preserves order
 const rendererTypes = new Map([
@@ -103,8 +103,8 @@ function stateModelFactory(pluginManager, configSchema) {
             if (Math.abs(self.stats.scoreMax - scoreMax) > EPSILON ||
                 Math.abs(self.stats.scoreMin - scoreMin) > EPSILON) {
                 self.stats = { scoreMin, scoreMax };
-                self.statsReady = true;
             }
+            self.statsReady = true;
         },
         /**
          * #action
@@ -411,8 +411,8 @@ function stateModelFactory(pluginManager, configSchema) {
          * #getter
          */
         get adapterCapabilities() {
-            return pluginManager.getAdapterType(self.adapterTypeName)
-                .adapterCapabilities;
+            const type = self.adapterTypeName;
+            return pluginManager.getAdapterType(type).adapterCapabilities;
         },
     }))
         .views(self => {

package/esm/LinearWiggleDisplay/models/model.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts ADDED Viewed

@@ -0,0 +1,7 @@
+/// <reference types="react" />
+import { DialogProps } from '@mui/material';
+declare function DraggableDialog(props: DialogProps & {
+    title: string;
+}): JSX.Element;
+declare const _default: typeof DraggableDialog;
+export default _default;

package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js ADDED Viewed

@@ -0,0 +1,38 @@
+import React from 'react';
+import { Dialog, DialogTitle, IconButton, Divider, Paper, ScopedCssBaseline, } from '@mui/material';
+import { observer } from 'mobx-react';
+import { makeStyles } from 'tss-react/mui';
+import Draggable from 'react-draggable';
+// icons
+import CloseIcon from '@mui/icons-material/Close';
+const useStyles = makeStyles()(theme => ({
+    closeButton: {
+        position: 'absolute',
+        right: theme.spacing(1),
+        top: theme.spacing(1),
+        color: theme.palette.grey[500],
+    },
+}));
+// draggable dialog demo https://mui.com/material-ui/react-dialog/#draggable-dialog
+function PaperComponent(props) {
+    return (React.createElement(Draggable, { handle: "#draggable-dialog-title", cancel: '[class*="MuiDialogContent-root"]' },
+        React.createElement(Paper, { ...props })));
+}
+function DraggableDialog(props) {
+    const { classes } = useStyles();
+    const { title, children, onClose } = props;
+    return (React.createElement(Dialog, { ...props, PaperComponent: PaperComponent, "aria-labelledby": "draggable-dialog-title" // this area is important for the draggable functionality
+     },
+        React.createElement(ScopedCssBaseline, null,
+            React.createElement(DialogTitle, { style: { cursor: 'move' }, id: "draggable-dialog-title" },
+                title,
+                onClose ? (React.createElement(IconButton, { className: classes.closeButton, onClick: () => {
+                        // @ts-ignore
+                        onClose();
+                    } },
+                    React.createElement(CloseIcon, null))) : null),
+            React.createElement(Divider, null),
+            children)));
+}
+export default observer(DraggableDialog);
+//# sourceMappingURL=DraggableDialog.js.map

package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"DraggableDialog.js","sourceRoot":"","sources":["../../../src/MultiLinearWiggleDisplay/components/DraggableDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EACL,MAAM,EACN,WAAW,EACX,UAAU,EACV,OAAO,EAEP,KAAK,EAEL,iBAAiB,GAClB,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,SAAS,MAAM,iBAAiB,CAAA;AAEvC,QAAQ;AACR,OAAO,SAAS,MAAM,2BAA2B,CAAA;AAEjD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;CACF,CAAC,CAAC,CAAA;AAEH,mFAAmF;AACnF,SAAS,cAAc,CAAC,KAAiB;IACvC,OAAO,CACL,oBAAC,SAAS,IACR,MAAM,EAAC,yBAAyB,EAChC,MAAM,EAAE,kCAAkC;QAE1C,oBAAC,KAAK,OAAK,KAAK,GAAI,CACV,CACb,CAAA;AACH,CAAC;AAED,SAAS,eAAe,CAAC,KAAsC;IAC7D,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,KAAK,EAAE,QAAQ,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;IAE1C,OAAO,CACL,oBAAC,MAAM,OACD,KAAK,EACT,cAAc,EAAE,cAAc,qBACd,wBAAwB,CAAC,yDAAyD;;QAElG,oBAAC,iBAAiB;YAChB,oBAAC,WAAW,IAAC,KAAK,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,EAAE,EAAE,EAAC,wBAAwB;gBAChE,KAAK;gBACL,OAAO,CAAC,CAAC,CAAC,CACT,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,GAAG,EAAE;wBACZ,aAAa;wBACb,OAAO,EAAE,CAAA;oBACX,CAAC;oBAED,oBAAC,SAAS,OAAG,CACF,CACd,CAAC,CAAC,CAAC,IAAI,CACI;YACd,oBAAC,OAAO,OAAG;YACV,QAAQ,CACS,CACb,CACV,CAAA;AACH,CAAC;AACD,eAAe,QAAQ,CAAC,eAAe,CAAC,CAAA"}

package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js CHANGED Viewed

@@ -1,48 +1,30 @@
 import React, { useState } from 'react';
-import { Button, Dialog, DialogContent, DialogActions, DialogTitle, IconButton, Paper, } from '@mui/material';
+import { Button, DialogContent, DialogActions } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
 import { getStr, isUriLocation, measureGridWidth, useLocalStorage, } from '@jbrowse/core/util';
 import { DataGrid } from '@mui/x-data-grid';
-import Draggable from 'react-draggable';
 import clone from 'clone';
 // locals
+import DraggableDialog from './DraggableDialog';
 import ColorPicker, { ColorPopover } from '@jbrowse/core/ui/ColorPicker';
 import { UriLink } from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail';
 import { moveUp, moveDown } from './util';
 // icons
-import CloseIcon from '@mui/icons-material/Close';
 import KeyboardDoubleArrowUpIcon from '@mui/icons-material/KeyboardDoubleArrowUp';
 import KeyboardDoubleArrowDownIcon from '@mui/icons-material/KeyboardDoubleArrowDown';
 import KeyboardArrowDownIcon from '@mui/icons-material/KeyboardArrowDown';
 import KeyboardArrowUpIcon from '@mui/icons-material/KeyboardArrowUp';
-const useStyles = makeStyles()(theme => ({
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
+const useStyles = makeStyles()({
     content: {
         minWidth: 800,
     },
-}));
-// draggable dialog demo https://mui.com/material-ui/react-dialog/#draggable-dialog
-function PaperComponent(props) {
-    return (React.createElement(Draggable, { handle: "#draggable-dialog-title", cancel: '[class*="MuiDialogContent-root"]' },
-        React.createElement(Paper, { ...props })));
-}
+});
 export default function SetColorDialog({ model, handleClose, }) {
     const { classes } = useStyles();
     const { sources } = model;
     const [currLayout, setCurrLayout] = useState(clone(sources || []));
     const [showTips, setShowTips] = useLocalStorage('multiwiggle-showTips', true);
-    return (React.createElement(Dialog, { PaperComponent: PaperComponent, open: true, onClose: handleClose, maxWidth: "xl", "aria-labelledby": "draggable-dialog-title" // this area is important for the draggable functionality
-     },
-        React.createElement(DialogTitle, { style: { cursor: 'move' }, id: "draggable-dialog-title" },
-            "Multi-wiggle color/arrangement editor",
-            ' ',
-            React.createElement(IconButton, { className: classes.closeButton, onClick: handleClose },
-                React.createElement(CloseIcon, null))),
+    return (React.createElement(DraggableDialog, { open: true, onClose: handleClose, maxWidth: "xl", title: 'Multi-wiggle color/arrangement editor' },
         React.createElement(DialogContent, { className: classes.content },
             React.createElement(Button, { variant: "contained", style: { float: 'right' }, onClick: () => setShowTips(!showTips) }, showTips ? 'Hide tips' : 'Show tips'),
             React.createElement("br", null),

package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"SetColorDialog.js","sourceRoot":"","sources":["../../../src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,MAAM,eAAe,CAAA;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EACL,MAAM,EACN,aAAa,EACb,gBAAgB,EAChB,eAAe,GAChB,MAAM,oBAAoB,CAAA;AAC3B,OAAO,EAAE,QAAQ,EAAkB,MAAM,kBAAkB,CAAA;AAC3D,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,SAAS;AACT,OAAO,eAAe,MAAM,mBAAmB,CAAA;AAC/C,OAAO,WAAW,EAAE,EAAE,YAAY,EAAE,MAAM,8BAA8B,CAAA;AACxE,OAAO,EAAE,OAAO,EAAE,MAAM,mDAAmD,CAAA;AAC3E,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,QAAQ,CAAA;AAGzC,QAAQ;AACR,OAAO,yBAAyB,MAAM,2CAA2C,CAAA;AACjF,OAAO,2BAA2B,MAAM,6CAA6C,CAAA;AACrF,OAAO,qBAAqB,MAAM,uCAAuC,CAAA;AACzE,OAAO,mBAAmB,MAAM,qCAAqC,CAAA;AAErE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,OAAO,EAAE;QACP,QAAQ,EAAE,GAAG;KACd;CACF,CAAC,CAAA;AAEF,MAAM,CAAC,OAAO,UAAU,cAAc,CAAC,EACrC,KAAK,EACL,WAAW,GAQZ;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;IACzB,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,OAAO,IAAI,EAAE,CAAC,CAAC,CAAA;IAClE,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,eAAe,CAAC,sBAAsB,EAAE,IAAI,CAAC,CAAA;IAC7E,OAAO,CACL,oBAAC,eAAe,IACd,IAAI,QACJ,OAAO,EAAE,WAAW,EACpB,QAAQ,EAAC,IAAI,EACb,KAAK,EAAE,uCAAuC;QAE9C,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,OAAO;YACvC,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EACzB,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,CAAC,CAAC,QAAQ,CAAC,IAEpC,QAAQ,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,WAAW,CAC9B;YACT,+BAAM;YACL,QAAQ,CAAC,CAAC,CAAC,CACV;;gBAEE;oBACE,uFAA6D;oBAC7D,6FAEK;oBACL,+FAEK;oBACL,6FAEK;oBACL,0EAAgD;oBAChD,iGAEK;oBACL,kIAGK,CACF,CACJ,CACJ,CAAC,CAAC,CAAC,IAAI;YACR,oBAAC,WAAW,IACV,IAAI,EAAE,UAAU,EAChB,QAAQ,EAAE,aAAa,EACvB,QAAQ,EAAE,QAAQ,GAClB,CACY;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,IAAI,EAAC,QAAQ,EACb,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,EAAE,CAAA;oBACnB,aAAa,CAAC,KAAK,CAAC,OAAO,IAAI,EAAE,CAAC,CAAA;gBACpC,CAAC,4BAGM;YACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE;oBACZ,WAAW,EAAE,CAAA;oBACb,aAAa,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,OAAO,IAAI,EAAE,CAAC,CAAC,CAAC,CAAA;gBAC3C,CAAC,aAGM;YACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,IAAI,EAAC,QAAQ,EACb,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,SAAS,CAAC,UAAU,CAAC,CAAA;oBAC3B,WAAW,EAAE,CAAA;gBACf,CAAC,aAGM,CACK,CACA,CACnB,CAAA;AACH,CAAC;AAED,SAAS,WAAW,CAAC,EACnB,IAAI,EACJ,QAAQ,EACR,QAAQ,GAKT;IACC,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,CAAqB,IAAI,CAAC,CAAA;IAClE,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,CAAC,EAAc,CAAC,CAAA;IAExD,aAAa;IACb,MAAM,EAAE,IAAI,EAAE,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,IAAI,EAAE,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;IAE1E,oEAAoE;IACpE,MAAM,OAAO,GAAG;QACd;YACE,KAAK,EAAE,OAAO;YACd,UAAU,EAAE,OAAO;YACnB,UAAU,EAAE,CAAC,MAAsB,EAAE,EAAE;gBACrC,MAAM,EAAE,KAAK,EAAE,EAAE,EAAE,GAAG,MAAM,CAAA;gBAC5B,OAAO,CACL,oBAAC,WAAW,IACV,KAAK,EAAE,KAAK,IAAI,MAAM,EACtB,QAAQ,EAAE,CAAC,CAAC,EAAE;wBACZ,MAAM,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,EAAE,CAAC,CAAA;wBACzC,IAAI,GAAG,EAAE;4BACP,GAAG,CAAC,KAAK,GAAG,CAAC,CAAA;yBACd;wBACD,QAAQ,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAA;oBACrB,CAAC,GACD,CACH,CAAA;YACH,CAAC;SACF;QACD;YACE,KAAK,EAAE,MAAM;YACb,YAAY,EAAE,CAAC,IAAI,CAAC;YACpB,UAAU,EAAE,MAAM;YAClB,KAAK,EAAE,gBAAgB,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;SAC/C;QACD,GAAG,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;YAC/B,KAAK,EAAE,GAAG;YACV,YAAY,EAAE,CAAC,IAAI,CAAC;YACpB,UAAU,EAAE,CAAC,MAAsB,EAAE,EAAE;gBACrC,MAAM,EAAE,KAAK,EAAE,GAAG,MAAM,CAAA;gBACxB,OAAO,aAAa,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,oBAAC,OAAO,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;YACzE,CAAC;YACD,aAAa;YACb,KAAK,EAAE,gBAAgB,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;SAC/C,CAAC,CAAC;KACJ,CAAA;IAED,qEAAqE;IACrE,oCAAoC;IACpC,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAA;IACtD,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,CAGrC,EAAE,GAAG,EAAE,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC,CAAA;IAE3B,OAAO,CACL;QACE,oBAAC,MAAM,IACL,QAAQ,EAAE,CAAC,QAAQ,CAAC,MAAM,EAC1B,OAAO,EAAE,KAAK,CAAC,EAAE,CAAC,WAAW,CAAC,KAAK,CAAC,aAAa,CAAC,qCAG3C;QACT,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,GAAG,IAAI,CAAC,EAAE,QAAQ,CAAC,CAAC,EACpD,QAAQ,EAAE,CAAC,QAAQ,CAAC,MAAM;YAE1B,oBAAC,mBAAmB,OAAG;YACtB,QAAQ,CAAC,CAAC,CAAC,wBAAwB,CAAC,CAAC,CAAC,IAAI,CACpC;QACT,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC,GAAG,IAAI,CAAC,EAAE,QAAQ,CAAC,CAAC,EACtD,QAAQ,EAAE,CAAC,QAAQ,CAAC,MAAM;YAE1B,oBAAC,qBAAqB,OAAG;YACxB,QAAQ,CAAC,CAAC,CAAC,0BAA0B,CAAC,CAAC,CAAC,IAAI,CACtC;QACT,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,GAAG,IAAI,CAAC,EAAE,QAAQ,EAAE,IAAI,CAAC,MAAM,CAAC,CAAC,EACjE,QAAQ,EAAE,CAAC,QAAQ,CAAC,MAAM;YAE1B,oBAAC,yBAAyB,OAAG;YAC5B,QAAQ,CAAC,CAAC,CAAC,4BAA4B,CAAC,CAAC,CAAC,IAAI,CACxC;QACT,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,QAAQ,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package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts CHANGED Viewed

@@ -8,7 +8,7 @@ declare const TooltipContents: React.ForwardRefExoticComponent<{
     };
     feature: Feature;
 } & React.RefAttributes<HTMLDivElement>>;
-declare type Coord = [number, number];
+type Coord = [number, number];
 declare const WiggleTooltip: (props: {
     model: {
         featureUnderMouse: Feature;

package/esm/MultiLinearWiggleDisplay/models/model.d.ts CHANGED Viewed

@@ -304,7 +304,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
     renderProps(): any;
     readonly hasResolution: boolean;
     readonly hasGlobalStats: boolean;
-    readonly fillSetting: 2 | 1 | 0;
+    readonly fillSetting: 1 | 2 | 0;
 } & {
     trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
         label: string;
@@ -338,6 +338,6 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
     userBpPerPxLimit: number | undefined;
     userByteSizeLimit: number | undefined;
 } & import("mobx-state-tree")._NotCustomized>;
-export declare type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
-export declare type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
+export type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
+export type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
 export default stateModelFactory;

package/esm/MultiLinearWiggleDisplay/models/model.js CHANGED Viewed

@@ -15,7 +15,7 @@ import Tooltip from '../components/Tooltip';
 import { StatBars } from '../components/WiggleDisplayComponent';
 const randomColor = () => '#000000'.replace(/0/g, () => (~~(Math.random() * 16)).toString(16));
 // lazt components
-const SetMinMaxDlg = lazy(() => import('../components/SetMinMaxDialog'));
+const SetMinMaxDlg = lazy(() => import('../../shared/SetMinMaxDialog'));
 const SetColorDlg = lazy(() => import('../components/SetColorDialog'));
 // using a map because it preserves order
 const rendererTypes = new Map([

package/esm/MultiLinearWiggleDisplay/models/model.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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