@jbrowse/plugin-wiggle 2.2.0 → 2.2.1

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Files changed (22) hide show
  1. package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +1 -1
  2. package/dist/LinearWiggleDisplay/models/model.d.ts +23 -25
  3. package/dist/LinearWiggleDisplay/models/model.js +3 -3
  4. package/dist/LinearWiggleDisplay/models/model.js.map +1 -1
  5. package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +1 -1
  6. package/dist/MultiLinearWiggleDisplay/models/model.d.ts +3 -3
  7. package/dist/Tooltip.d.ts +2 -2
  8. package/dist/index.d.ts +2 -2
  9. package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +1 -1
  10. package/esm/LinearWiggleDisplay/models/model.d.ts +23 -25
  11. package/esm/LinearWiggleDisplay/models/model.js +3 -3
  12. package/esm/LinearWiggleDisplay/models/model.js.map +1 -1
  13. package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +1 -1
  14. package/esm/MultiLinearWiggleDisplay/models/model.d.ts +3 -3
  15. package/esm/Tooltip.d.ts +2 -2
  16. package/esm/index.d.ts +2 -2
  17. package/package.json +2 -2
  18. package/src/BigWigAdapter/__snapshots__/BigWigAdapter.test.ts.snap +14 -14
  19. package/src/DensityRenderer/__snapshots__/DensityRenderer.test.js.snap +4 -4
  20. package/src/LinearWiggleDisplay/models/model.tsx +4 -4
  21. package/src/XYPlotRenderer/__snapshots__/XYPlotRenderer.test.js.snap +4 -4
  22. package/src/__snapshots__/index.test.js.snap +1 -1
package/dist/LinearWiggleDisplay/components/Tooltip.d.ts CHANGED
@@ -4,7 +4,7 @@ import Tooltip, { TooltipContentsComponent } from '../../Tooltip';
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  declare const TooltipContents: React.ForwardRefExoticComponent<{
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  feature: Feature;
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  } & React.RefAttributes<HTMLDivElement>>;
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- declare type Coord = [number, number];
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+ type Coord = [number, number];
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  declare const WiggleTooltip: (props: {
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  model: {
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  featureUnderMouse: Feature;
package/dist/LinearWiggleDisplay/models/model.d.ts CHANGED
@@ -1,8 +1,8 @@
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  import React from 'react';
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  import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
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+ import { Feature } from '@jbrowse/core/util';
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  import { Instance } from 'mobx-state-tree';
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  import PluginManager from '@jbrowse/core/PluginManager';
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- import { Feature } from '@jbrowse/core/util/simpleFeature';
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  /**
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  * #stateModel LinearWiggleDisplay
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  * Extends `BaseLinearDisplay`
@@ -23,34 +23,34 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  } & {
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  assemblyName: import("mobx-state-tree").ISimpleType<string>;
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  }, {
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- setRefName(newRefName: string): void;
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+ setRefName(newRefName: string): void; /**
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+ * #property
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+ */
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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  reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
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  isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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  isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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  }, {
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- renderInProgress: AbortController | undefined; /**
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- * #property
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- */
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+ renderInProgress: AbortController | undefined;
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  filled: boolean;
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  reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
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  features: Map<string, Feature> | undefined;
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- layout: any; /**
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- * #property
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- */
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+ layout: any;
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  status: string;
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  error: unknown;
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- message: string | undefined; /**
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- * #property
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- */
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+ message: string | undefined;
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  maxHeightReached: boolean;
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  ReactComponent: ({ model, }: {
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- model: any;
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+ model: any; /**
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+ * #property
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+ */
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  }) => any;
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  renderProps: any;
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  } & {
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  doReload(): void;
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- afterAttach(): void;
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+ afterAttach(): void; /**
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+ * #property
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+ */
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  setStatus(message: string): void;
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  setLoading(abortController: AbortController): void;
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  setMessage(messageText: string): void;
@@ -177,15 +177,13 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
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  readonly DisplayMessageComponent: React.FC<any> | undefined;
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  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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- readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[]; /**
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- * #action
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- */
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+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
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  regionCannotBeRendered(): undefined;
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  } & {
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- setError(error?: unknown): void;
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- setRpcDriverName(rpcDriverName: string): void; /**
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+ setError(error?: unknown): void; /**
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  * #action
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  */
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+ setRpcDriverName(rpcDriverName: string): void;
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  reload(): void;
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  } & {
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  currBpPerPx: number;
@@ -211,7 +209,9 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  searchFeatureByID(id: string): [number, number, number, number] | undefined;
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  readonly currentBytesRequested: number;
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  readonly currentFeatureScreenDensity: number;
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- readonly maxFeatureScreenDensity: any;
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+ readonly maxFeatureScreenDensity: any; /**
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+ * #getter
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+ */
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  readonly estimatedStatsReady: boolean;
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  readonly maxAllowableBytes: number;
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  } & {
@@ -229,9 +229,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  resizeHeight(distance: number): number;
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  setScrollTop(scrollTop: number): void;
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  updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
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- addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void; /**
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- * #getter
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- */
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+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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  setCurrBpPerPx(n: number): void;
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  deleteBlock(key: string): void;
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  selectFeature(feature: Feature): void;
@@ -459,7 +457,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  /**
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  * #getter
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  */
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- readonly fillSetting: 2 | 1 | 0;
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+ readonly fillSetting: 1 | 2 | 0;
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  } & {
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  /**
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  * #method
@@ -503,6 +501,6 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  userBpPerPxLimit: number | undefined;
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  userByteSizeLimit: number | undefined;
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  } & import("mobx-state-tree")._NotCustomized>;
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- export declare type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
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- export declare type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
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+ export type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
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+ export type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
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  export default stateModelFactory;
package/dist/LinearWiggleDisplay/models/model.js CHANGED
@@ -131,8 +131,8 @@ function stateModelFactory(pluginManager, configSchema) {
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  if (Math.abs(self.stats.scoreMax - scoreMax) > EPSILON ||
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  Math.abs(self.stats.scoreMin - scoreMin) > EPSILON) {
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  self.stats = { scoreMin, scoreMax };
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- self.statsReady = true;
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  }
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+ self.statsReady = true;
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  },
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  /**
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  * #action
@@ -439,8 +439,8 @@ function stateModelFactory(pluginManager, configSchema) {
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  * #getter
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  */
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  get adapterCapabilities() {
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- return pluginManager.getAdapterType(self.adapterTypeName)
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- .adapterCapabilities;
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+ const type = self.adapterTypeName;
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+ return pluginManager.getAdapterType(type).adapterCapabilities;
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  },
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  }))
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  .views(self => {
package/dist/LinearWiggleDisplay/models/model.js.map CHANGED
@@ -1 +1 @@
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package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts CHANGED
@@ -8,7 +8,7 @@ declare const TooltipContents: React.ForwardRefExoticComponent<{
8
8
  };
9
9
  feature: Feature;
10
10
  } & React.RefAttributes<HTMLDivElement>>;
11
- declare type Coord = [number, number];
11
+ type Coord = [number, number];
12
12
  declare const WiggleTooltip: (props: {
13
13
  model: {
14
14
  featureUnderMouse: Feature;
package/dist/MultiLinearWiggleDisplay/models/model.d.ts CHANGED
@@ -304,7 +304,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
304
304
  renderProps(): any;
305
305
  readonly hasResolution: boolean;
306
306
  readonly hasGlobalStats: boolean;
307
- readonly fillSetting: 2 | 1 | 0;
307
+ readonly fillSetting: 1 | 2 | 0;
308
308
  } & {
309
309
  trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
310
310
  label: string;
@@ -338,6 +338,6 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
338
338
  userBpPerPxLimit: number | undefined;
339
339
  userByteSizeLimit: number | undefined;
340
340
  } & import("mobx-state-tree")._NotCustomized>;
341
- export declare type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
342
- export declare type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
341
+ export type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
342
+ export type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
343
343
  export default stateModelFactory;
package/dist/Tooltip.d.ts CHANGED
@@ -1,7 +1,7 @@
1
1
  import React from 'react';
2
2
  import { Feature } from '@jbrowse/core/util';
3
- declare type Coord = [number, number];
4
- export declare type TooltipContentsComponent = React.ForwardRefExoticComponent<{
3
+ type Coord = [number, number];
4
+ export type TooltipContentsComponent = React.ForwardRefExoticComponent<{
5
5
  feature: Feature;
6
6
  model: any;
7
7
  } & React.RefAttributes<HTMLDivElement>>;
package/dist/index.d.ts CHANGED
@@ -328,7 +328,7 @@ export default class WigglePlugin extends Plugin {
328
328
  renderProps(): any;
329
329
  readonly hasResolution: boolean;
330
330
  readonly hasGlobalStats: boolean;
331
- readonly fillSetting: 2 | 1 | 0;
331
+ readonly fillSetting: 1 | 2 | 0;
332
332
  } & {
333
333
  trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
334
334
  label: string;
@@ -625,7 +625,7 @@ export default class WigglePlugin extends Plugin {
625
625
  renderProps(): any;
626
626
  readonly hasResolution: boolean;
627
627
  readonly hasGlobalStats: boolean;
628
- readonly fillSetting: 2 | 1 | 0;
628
+ readonly fillSetting: 1 | 2 | 0;
629
629
  } & {
630
630
  trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
631
631
  label: string;
package/esm/LinearWiggleDisplay/components/Tooltip.d.ts CHANGED
@@ -4,7 +4,7 @@ import Tooltip, { TooltipContentsComponent } from '../../Tooltip';
4
4
  declare const TooltipContents: React.ForwardRefExoticComponent<{
5
5
  feature: Feature;
6
6
  } & React.RefAttributes<HTMLDivElement>>;
7
- declare type Coord = [number, number];
7
+ type Coord = [number, number];
8
8
  declare const WiggleTooltip: (props: {
9
9
  model: {
10
10
  featureUnderMouse: Feature;
package/esm/LinearWiggleDisplay/models/model.d.ts CHANGED
@@ -1,8 +1,8 @@
1
1
  import React from 'react';
2
2
  import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
3
+ import { Feature } from '@jbrowse/core/util';
3
4
  import { Instance } from 'mobx-state-tree';
4
5
  import PluginManager from '@jbrowse/core/PluginManager';
5
- import { Feature } from '@jbrowse/core/util/simpleFeature';
6
6
  /**
7
7
  * #stateModel LinearWiggleDisplay
8
8
  * Extends `BaseLinearDisplay`
@@ -23,34 +23,34 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
23
23
  } & {
24
24
  assemblyName: import("mobx-state-tree").ISimpleType<string>;
25
25
  }, {
26
- setRefName(newRefName: string): void;
26
+ setRefName(newRefName: string): void; /**
27
+ * #property
28
+ */
27
29
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
28
30
  reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
29
31
  isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
30
32
  isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
31
33
  }, {
32
- renderInProgress: AbortController | undefined; /**
33
- * #property
34
- */
34
+ renderInProgress: AbortController | undefined;
35
35
  filled: boolean;
36
36
  reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
37
37
  features: Map<string, Feature> | undefined;
38
- layout: any; /**
39
- * #property
40
- */
38
+ layout: any;
41
39
  status: string;
42
40
  error: unknown;
43
- message: string | undefined; /**
44
- * #property
45
- */
41
+ message: string | undefined;
46
42
  maxHeightReached: boolean;
47
43
  ReactComponent: ({ model, }: {
48
- model: any;
44
+ model: any; /**
45
+ * #property
46
+ */
49
47
  }) => any;
50
48
  renderProps: any;
51
49
  } & {
52
50
  doReload(): void;
53
- afterAttach(): void;
51
+ afterAttach(): void; /**
52
+ * #property
53
+ */
54
54
  setStatus(message: string): void;
55
55
  setLoading(abortController: AbortController): void;
56
56
  setMessage(messageText: string): void;
@@ -177,15 +177,13 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
177
177
  readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
178
178
  readonly DisplayMessageComponent: React.FC<any> | undefined;
179
179
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
180
- readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[]; /**
181
- * #action
182
- */
180
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
183
181
  regionCannotBeRendered(): undefined;
184
182
  } & {
185
- setError(error?: unknown): void;
186
- setRpcDriverName(rpcDriverName: string): void; /**
183
+ setError(error?: unknown): void; /**
187
184
  * #action
188
185
  */
186
+ setRpcDriverName(rpcDriverName: string): void;
189
187
  reload(): void;
190
188
  } & {
191
189
  currBpPerPx: number;
@@ -211,7 +209,9 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
211
209
  searchFeatureByID(id: string): [number, number, number, number] | undefined;
212
210
  readonly currentBytesRequested: number;
213
211
  readonly currentFeatureScreenDensity: number;
214
- readonly maxFeatureScreenDensity: any;
212
+ readonly maxFeatureScreenDensity: any; /**
213
+ * #getter
214
+ */
215
215
  readonly estimatedStatsReady: boolean;
216
216
  readonly maxAllowableBytes: number;
217
217
  } & {
@@ -229,9 +229,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
229
229
  resizeHeight(distance: number): number;
230
230
  setScrollTop(scrollTop: number): void;
231
231
  updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
232
- addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void; /**
233
- * #getter
234
- */
232
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
235
233
  setCurrBpPerPx(n: number): void;
236
234
  deleteBlock(key: string): void;
237
235
  selectFeature(feature: Feature): void;
@@ -459,7 +457,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
459
457
  /**
460
458
  * #getter
461
459
  */
462
- readonly fillSetting: 2 | 1 | 0;
460
+ readonly fillSetting: 1 | 2 | 0;
463
461
  } & {
464
462
  /**
465
463
  * #method
@@ -503,6 +501,6 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
503
501
  userBpPerPxLimit: number | undefined;
504
502
  userByteSizeLimit: number | undefined;
505
503
  } & import("mobx-state-tree")._NotCustomized>;
506
- export declare type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
507
- export declare type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
504
+ export type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
505
+ export type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
508
506
  export default stateModelFactory;
package/esm/LinearWiggleDisplay/models/model.js CHANGED
@@ -103,8 +103,8 @@ function stateModelFactory(pluginManager, configSchema) {
103
103
  if (Math.abs(self.stats.scoreMax - scoreMax) > EPSILON ||
104
104
  Math.abs(self.stats.scoreMin - scoreMin) > EPSILON) {
105
105
  self.stats = { scoreMin, scoreMax };
106
- self.statsReady = true;
107
106
  }
107
+ self.statsReady = true;
108
108
  },
109
109
  /**
110
110
  * #action
@@ -411,8 +411,8 @@ function stateModelFactory(pluginManager, configSchema) {
411
411
  * #getter
412
412
  */
413
413
  get adapterCapabilities() {
414
- return pluginManager.getAdapterType(self.adapterTypeName)
415
- .adapterCapabilities;
414
+ const type = self.adapterTypeName;
415
+ return pluginManager.getAdapterType(type).adapterCapabilities;
416
416
  },
417
417
  }))
418
418
  .views(self => {
package/esm/LinearWiggleDisplay/models/model.js.map CHANGED
@@ -1 +1 @@
1
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package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts CHANGED
@@ -8,7 +8,7 @@ declare const TooltipContents: React.ForwardRefExoticComponent<{
8
8
  };
9
9
  feature: Feature;
10
10
  } & React.RefAttributes<HTMLDivElement>>;
11
- declare type Coord = [number, number];
11
+ type Coord = [number, number];
12
12
  declare const WiggleTooltip: (props: {
13
13
  model: {
14
14
  featureUnderMouse: Feature;
package/esm/MultiLinearWiggleDisplay/models/model.d.ts CHANGED
@@ -304,7 +304,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
304
304
  renderProps(): any;
305
305
  readonly hasResolution: boolean;
306
306
  readonly hasGlobalStats: boolean;
307
- readonly fillSetting: 2 | 1 | 0;
307
+ readonly fillSetting: 1 | 2 | 0;
308
308
  } & {
309
309
  trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
310
310
  label: string;
@@ -338,6 +338,6 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
338
338
  userBpPerPxLimit: number | undefined;
339
339
  userByteSizeLimit: number | undefined;
340
340
  } & import("mobx-state-tree")._NotCustomized>;
341
- export declare type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
342
- export declare type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
341
+ export type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
342
+ export type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
343
343
  export default stateModelFactory;
package/esm/Tooltip.d.ts CHANGED
@@ -1,7 +1,7 @@
1
1
  import React from 'react';
2
2
  import { Feature } from '@jbrowse/core/util';
3
- declare type Coord = [number, number];
4
- export declare type TooltipContentsComponent = React.ForwardRefExoticComponent<{
3
+ type Coord = [number, number];
4
+ export type TooltipContentsComponent = React.ForwardRefExoticComponent<{
5
5
  feature: Feature;
6
6
  model: any;
7
7
  } & React.RefAttributes<HTMLDivElement>>;
package/esm/index.d.ts CHANGED
@@ -328,7 +328,7 @@ export default class WigglePlugin extends Plugin {
328
328
  renderProps(): any;
329
329
  readonly hasResolution: boolean;
330
330
  readonly hasGlobalStats: boolean;
331
- readonly fillSetting: 2 | 1 | 0;
331
+ readonly fillSetting: 1 | 2 | 0;
332
332
  } & {
333
333
  trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
334
334
  label: string;
@@ -625,7 +625,7 @@ export default class WigglePlugin extends Plugin {
625
625
  renderProps(): any;
626
626
  readonly hasResolution: boolean;
627
627
  readonly hasGlobalStats: boolean;
628
- readonly fillSetting: 2 | 1 | 0;
628
+ readonly fillSetting: 1 | 2 | 0;
629
629
  } & {
630
630
  trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
631
631
  label: string;
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-wiggle",
3
- "version": "2.2.0",
3
+ "version": "2.2.1",
4
4
  "description": "JBrowse 2 wiggle adapters, tracks, etc.",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -70,5 +70,5 @@
70
70
  "distModule": "esm/index.js",
71
71
  "srcModule": "src/index.ts",
72
72
  "module": "esm/index.js",
73
- "gitHead": "cf31db8d833117f8822510340664fb3f045975cb"
73
+ "gitHead": "896d175c5d9345049faea8e1155f243c912aac42"
74
74
  }
package/src/BigWigAdapter/__snapshots__/BigWigAdapter.test.ts.snap CHANGED
@@ -1,7 +1,7 @@
1
1
  // Jest Snapshot v1, https://goo.gl/fbAQLP
2
2
 
3
3
  exports[`adapter can fetch features from volvox.bw adapter can fetch stats from volvox.bw 1`] = `
4
- Object {
4
+ {
5
5
  "basesCovered": 49984,
6
6
  "featureDensity": 0.00002000640204865557,
7
7
  "scoreMax": 38,
@@ -14,7 +14,7 @@ Object {
14
14
  `;
15
15
 
16
16
  exports[`adapter can fetch features from volvox.bw get local stats 1`] = `
17
- Object {
17
+ {
18
18
  "basesCovered": 30100,
19
19
  "featureCount": 30000,
20
20
  "featureDensity": 0.9966777408637874,
@@ -28,7 +28,7 @@ Object {
28
28
  `;
29
29
 
30
30
  exports[`adapter can fetch features from volvox.bw get region stats 1`] = `
31
- Object {
31
+ {
32
32
  "basesCovered": 30001,
33
33
  "featureCount": 30001,
34
34
  "featureDensity": 1,
@@ -42,71 +42,71 @@ Object {
42
42
  `;
43
43
 
44
44
  exports[`adapter can fetch features from volvox.bw test basic aspects of getfeatures 1`] = `
45
- Array [
46
- Object {
45
+ [
46
+ {
47
47
  "end": 1003,
48
48
  "refName": "ctgA",
49
49
  "score": 18,
50
50
  "start": 1002,
51
51
  "uniqueId": ":ctgA:1002-1003",
52
52
  },
53
- Object {
53
+ {
54
54
  "end": 1004,
55
55
  "refName": "ctgA",
56
56
  "score": 18,
57
57
  "start": 1003,
58
58
  "uniqueId": ":ctgA:1003-1004",
59
59
  },
60
- Object {
60
+ {
61
61
  "end": 1005,
62
62
  "refName": "ctgA",
63
63
  "score": 18,
64
64
  "start": 1004,
65
65
  "uniqueId": ":ctgA:1004-1005",
66
66
  },
67
- Object {
67
+ {
68
68
  "end": 1006,
69
69
  "refName": "ctgA",
70
70
  "score": 19,
71
71
  "start": 1005,
72
72
  "uniqueId": ":ctgA:1005-1006",
73
73
  },
74
- Object {
74
+ {
75
75
  "end": 1007,
76
76
  "refName": "ctgA",
77
77
  "score": 20,
78
78
  "start": 1006,
79
79
  "uniqueId": ":ctgA:1006-1007",
80
80
  },
81
- Object {
81
+ {
82
82
  "end": 1008,
83
83
  "refName": "ctgA",
84
84
  "score": 20,
85
85
  "start": 1007,
86
86
  "uniqueId": ":ctgA:1007-1008",
87
87
  },
88
- Object {
88
+ {
89
89
  "end": 1009,
90
90
  "refName": "ctgA",
91
91
  "score": 20,
92
92
  "start": 1008,
93
93
  "uniqueId": ":ctgA:1008-1009",
94
94
  },
95
- Object {
95
+ {
96
96
  "end": 1010,
97
97
  "refName": "ctgA",
98
98
  "score": 20,
99
99
  "start": 1009,
100
100
  "uniqueId": ":ctgA:1009-1010",
101
101
  },
102
- Object {
102
+ {
103
103
  "end": 1011,
104
104
  "refName": "ctgA",
105
105
  "score": 20,
106
106
  "start": 1010,
107
107
  "uniqueId": ":ctgA:1010-1011",
108
108
  },
109
- Object {
109
+ {
110
110
  "end": 1012,
111
111
  "refName": "ctgA",
112
112
  "score": 19,
package/src/DensityRenderer/__snapshots__/DensityRenderer.test.js.snap CHANGED
@@ -1,16 +1,16 @@
1
1
  // Jest Snapshot v1, https://goo.gl/fbAQLP
2
2
 
3
3
  exports[`inverted mode and reversed 1`] = `
4
- Object {
4
+ {
5
5
  "imageData": Any<Object>,
6
- "reducedFeatures": Array [
7
- Object {
6
+ "reducedFeatures": [
7
+ {
8
8
  "end": 100,
9
9
  "score": 1,
10
10
  "start": 1,
11
11
  "uniqueId": "t1",
12
12
  },
13
- Object {
13
+ {
14
14
  "end": 200,
15
15
  "score": 2,
16
16
  "start": 101,
package/src/LinearWiggleDisplay/models/model.tsx CHANGED
@@ -10,6 +10,7 @@ import {
10
10
  getSession,
11
11
  getContainingView,
12
12
  isSelectionContainer,
13
+ Feature,
13
14
  } from '@jbrowse/core/util'
14
15
  import {
15
16
  BaseLinearDisplay,
@@ -19,7 +20,6 @@ import { when } from 'mobx'
19
20
  import { isAlive, types, Instance } from 'mobx-state-tree'
20
21
  import PluginManager from '@jbrowse/core/PluginManager'
21
22
 
22
- import { Feature } from '@jbrowse/core/util/simpleFeature'
23
23
  import { axisPropsFromTickScale } from 'react-d3-axis-mod'
24
24
  import {
25
25
  getNiceDomain,
@@ -143,8 +143,8 @@ function stateModelFactory(
143
143
  Math.abs(self.stats.scoreMin - scoreMin) > EPSILON
144
144
  ) {
145
145
  self.stats = { scoreMin, scoreMax }
146
- self.statsReady = true
147
146
  }
147
+ self.statsReady = true
148
148
  },
149
149
  /**
150
150
  * #action
@@ -491,8 +491,8 @@ function stateModelFactory(
491
491
  * #getter
492
492
  */
493
493
  get adapterCapabilities() {
494
- return pluginManager.getAdapterType(self.adapterTypeName)
495
- .adapterCapabilities
494
+ const type = self.adapterTypeName
495
+ return pluginManager.getAdapterType(type).adapterCapabilities
496
496
  },
497
497
  }))
498
498
  .views(self => {
package/src/XYPlotRenderer/__snapshots__/XYPlotRenderer.test.js.snap CHANGED
@@ -1,16 +1,16 @@
1
1
  // Jest Snapshot v1, https://goo.gl/fbAQLP
2
2
 
3
3
  exports[`several features 1`] = `
4
- Object {
4
+ {
5
5
  "imageData": Any<Object>,
6
- "reducedFeatures": Array [
7
- Object {
6
+ "reducedFeatures": [
7
+ {
8
8
  "end": 100,
9
9
  "score": 1,
10
10
  "start": 1,
11
11
  "uniqueId": "t1",
12
12
  },
13
- Object {
13
+ {
14
14
  "end": 200,
15
15
  "score": 2,
16
16
  "start": 101,
package/src/__snapshots__/index.test.js.snap CHANGED
@@ -1,3 +1,3 @@
1
1
  // Jest Snapshot v1, https://goo.gl/fbAQLP
2
2
 
3
- exports[`plugin in a stock JBrowse 1`] = `Object {}`;
3
+ exports[`plugin in a stock JBrowse 1`] = `{}`;