@jbrowse/plugin-wiggle 2.18.0 → 3.0.0

package/dist/BigWigAdapter/index.js

@@ -15,13 +15,23 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
 }) : function(o, v) {
     o["default"] = v;
 });
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };

package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts

@@ -1,9 +1,8 @@
-import React from 'react';
 import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
 declare const ConfirmDialog: ({ tracks, onClose, }: {
     tracks: AnyConfigurationModel[];
     onClose: (arg: boolean, arg1?: {
         name: string;
     }) => void;
-}) => React.JSX.Element;
+}) => import("react/jsx-runtime").JSX.Element;
 export default ConfirmDialog;

package/dist/CreateMultiWiggleExtension/ConfirmDialog.js

@@ -1,61 +1,26 @@
 "use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importStar(require("react"));
+const jsx_runtime_1 = require("react/jsx-runtime");
+const react_1 = require("react");
 const configuration_1 = require("@jbrowse/core/configuration");
 const Dialog_1 = __importDefault(require("@jbrowse/core/ui/Dialog"));
 const material_1 = require("@mui/material");
 const ConfirmDialog = ({ tracks, onClose, }) => {
     const [val, setVal] = (0, react_1.useState)(`MultiWiggle ${Date.now()}`);
     const allQuant = tracks.every(t => t.type === 'QuantitativeTrack');
-    return (react_1.default.createElement(Dialog_1.default, { open: true, onClose: () => {
+    return ((0, jsx_runtime_1.jsxs)(Dialog_1.default, { open: true, onClose: () => {
             onClose(false);
-        }, title: "Confirm multi-wiggle track create" },
-        react_1.default.createElement(material_1.DialogContent, null,
-            react_1.default.createElement(material_1.Typography, null,
-                !allQuant
-                    ? 'Not every track looks like a QuantitativeTrack. This could have unexpected behavior, confirm if it looks ok.'
-                    : null,
-                "Listing:"),
-            react_1.default.createElement("ul", null, tracks.map(track => (react_1.default.createElement("li", { key: track.trackId },
-                (0, configuration_1.readConfObject)(track, 'name'),
-                " - ",
-                track.type)))),
-            react_1.default.createElement(material_1.TextField, { value: val, onChange: event => {
-                    setVal(event.target.value);
-                }, helperText: "Track name" }),
-            react_1.default.createElement(material_1.Typography, null, "Confirm creation of track?")),
-        react_1.default.createElement(material_1.DialogActions, null,
-            react_1.default.createElement(material_1.Button, { onClick: () => {
-                    onClose(false);
-                }, color: "primary" }, "Cancel"),
-            react_1.default.createElement(material_1.Button, { onClick: () => {
-                    onClose(true, { name: val });
-                }, color: "primary", variant: "contained", autoFocus: true }, "Submit"))));
+        }, title: "Confirm multi-wiggle track create", children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { children: [(0, jsx_runtime_1.jsxs)(material_1.Typography, { children: [!allQuant
+                                ? 'Not every track looks like a QuantitativeTrack. This could have unexpected behavior, confirm if it looks ok.'
+                                : null, "Listing:"] }), (0, jsx_runtime_1.jsx)("ul", { children: tracks.map(track => ((0, jsx_runtime_1.jsxs)("li", { children: [(0, configuration_1.readConfObject)(track, 'name'), " - ", track.type] }, track.trackId))) }), (0, jsx_runtime_1.jsx)(material_1.TextField, { value: val, onChange: event => {
+                            setVal(event.target.value);
+                        }, helperText: "Track name" }), (0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Confirm creation of track?" })] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { onClick: () => {
+                            onClose(false);
+                        }, color: "primary", children: "Cancel" }), (0, jsx_runtime_1.jsx)(material_1.Button, { onClick: () => {
+                            onClose(true, { name: val });
+                        }, color: "primary", variant: "contained", autoFocus: true, children: "Submit" })] })] }));
 };
 exports.default = ConfirmDialog;

package/dist/CreateMultiWiggleExtension/index.js

@@ -15,13 +15,23 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
 }) : function(o, v) {
     o["default"] = v;
 });
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.default = CreateMultiWiggleExtensionF;
 const react_1 = require("react");

package/dist/DensityRenderer/DensityRenderer.js

@@ -1,13 +1,46 @@
 "use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
-const drawDensity_1 = require("../drawDensity");
 class DensityRenderer extends WiggleBaseRenderer_1.default {
     async draw(ctx, props) {
-        return (0, drawDensity_1.drawDensity)(ctx, props);
+        const { drawDensity } = await Promise.resolve().then(() => __importStar(require('../drawDensity')));
+        return drawDensity(ctx, props);
     }
 }
 exports.default = DensityRenderer;

package/dist/GuessAdapter/index.d.ts

@@ -0,0 +1,2 @@
+import type PluginManager from '@jbrowse/core/PluginManager';
+export default function GuessAdapterF(pluginManager: PluginManager): void;

package/dist/GuessAdapter/index.js

@@ -0,0 +1,25 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = GuessAdapterF;
+const util_1 = require("@jbrowse/core/util");
+const tracks_1 = require("@jbrowse/core/util/tracks");
+function GuessAdapterF(pluginManager) {
+    pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', (cb) => {
+        return (file, index, adapterHint) => {
+            const fileName = (0, tracks_1.getFileName)(file);
+            return (0, util_1.testAdapter)(fileName, /\.(bw|bigwig)$/i, adapterHint, 'BigWigAdapter')
+                ? {
+                    type: 'BigWigAdapter',
+                    bigWigLocation: file,
+                }
+                : cb(file, index, adapterHint);
+        };
+    });
+    pluginManager.addToExtensionPoint('Core-guessTrackTypeForLocation', (trackTypeGuesser) => {
+        return (adapterName) => {
+            return adapterName === 'BigWigAdapter'
+                ? 'QuantitativeTrack'
+                : trackTypeGuesser(adapterName);
+        };
+    });
+}

package/dist/LinePlotRenderer/LinePlotRenderer.js

@@ -1,17 +1,50 @@
 "use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const configuration_1 = require("@jbrowse/core/configuration");
 const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
-const drawLine_1 = require("../drawLine");
 const util_1 = require("../util");
 class LinePlotRenderer extends WiggleBaseRenderer_1.default {
     async draw(ctx, props) {
         const { config } = props;
         const c = (0, configuration_1.readConfObject)(config, 'color');
-        return (0, drawLine_1.drawLine)(ctx, {
+        const { drawLine } = await Promise.resolve().then(() => __importStar(require('../drawLine')));
+        return drawLine(ctx, {
             ...props,
             offset: util_1.YSCALEBAR_LABEL_OFFSET,
             colorCallback: c === '#f0f'

package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts

@@ -1,4 +1,3 @@
-import React from 'react';
 declare const SetColorDialog: ({ model, handleClose, }: {
     model: {
         color?: string;
@@ -9,5 +8,5 @@ declare const SetColorDialog: ({ model, handleClose, }: {
         setNegColor: (arg?: string) => void;
     };
     handleClose: () => void;
-}) => React.JSX.Element;
+}) => import("react/jsx-runtime").JSX.Element;
 export default SetColorDialog;

package/dist/LinearWiggleDisplay/components/SetColorDialog.js

@@ -1,67 +1,31 @@
 "use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importStar(require("react"));
+const jsx_runtime_1 = require("react/jsx-runtime");
+const react_1 = require("react");
 const ui_1 = require("@jbrowse/core/ui");
 const ColorPicker_1 = require("@jbrowse/core/ui/ColorPicker");
 const material_1 = require("@mui/material");
 const mobx_react_1 = require("mobx-react");
 const SetColorDialog = (0, mobx_react_1.observer)(function SetColorDialog({ model, handleClose, }) {
     const [posneg, setPosNeg] = (0, react_1.useState)(false);
-    return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: handleClose, title: "Set color" },
-        react_1.default.createElement(material_1.DialogContent, null,
-            react_1.default.createElement(material_1.Typography, null, "Select either an overall color, or the positive/negative colors. Note that density renderers only work properly with positive/negative colors"),
-            react_1.default.createElement(material_1.FormControlLabel, { checked: !posneg, onClick: () => {
-                    setPosNeg(false);
-                }, control: react_1.default.createElement(material_1.Radio, null), label: "Overall color" }),
-            react_1.default.createElement(material_1.FormControlLabel, { checked: posneg, onClick: () => {
-                    setPosNeg(true);
-                }, control: react_1.default.createElement(material_1.Radio, null), label: "Positive/negative color" }),
-            posneg ? (react_1.default.createElement(react_1.default.Fragment, null,
-                react_1.default.createElement(material_1.Typography, null, "Positive color"),
-                react_1.default.createElement(ColorPicker_1.ColorPicker, { color: model.posColor || 'black', onChange: event => {
-                        model.setPosColor(event);
-                        model.setColor(undefined);
-                    } }),
-                react_1.default.createElement(material_1.Typography, null, "Negative color"),
-                react_1.default.createElement(ColorPicker_1.ColorPicker, { color: model.negColor || 'black', onChange: event => {
-                        model.setNegColor(event);
-                        model.setColor(undefined);
-                    } }))) : (react_1.default.createElement(react_1.default.Fragment, null,
-                react_1.default.createElement(material_1.Typography, null, "Overall color"),
-                react_1.default.createElement(ColorPicker_1.ColorPicker, { color: model.color || 'black', onChange: event => {
-                        model.setColor(event);
-                    } })))),
-        react_1.default.createElement(material_1.DialogActions, null,
-            react_1.default.createElement(material_1.Button, { onClick: () => {
-                    model.setPosColor(undefined);
-                    model.setNegColor(undefined);
-                    model.setColor(undefined);
-                }, color: "secondary", variant: "contained" }, "Restore default"),
-            react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", type: "submit", onClick: () => {
-                    handleClose();
-                } }, "Submit"))));
+    return ((0, jsx_runtime_1.jsxs)(ui_1.Dialog, { open: true, onClose: handleClose, title: "Set color", children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Select either an overall color, or the positive/negative colors. Note that density renderers only work properly with positive/negative colors" }), (0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { checked: !posneg, onClick: () => {
+                            setPosNeg(false);
+                        }, control: (0, jsx_runtime_1.jsx)(material_1.Radio, {}), label: "Overall color" }), (0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { checked: posneg, onClick: () => {
+                            setPosNeg(true);
+                        }, control: (0, jsx_runtime_1.jsx)(material_1.Radio, {}), label: "Positive/negative color" }), posneg ? ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Positive color" }), (0, jsx_runtime_1.jsx)(ColorPicker_1.ColorPicker, { color: model.posColor || 'black', onChange: event => {
+                                    model.setPosColor(event);
+                                    model.setColor(undefined);
+                                } }), (0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Negative color" }), (0, jsx_runtime_1.jsx)(ColorPicker_1.ColorPicker, { color: model.negColor || 'black', onChange: event => {
+                                    model.setNegColor(event);
+                                    model.setColor(undefined);
+                                } })] })) : ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Overall color" }), (0, jsx_runtime_1.jsx)(ColorPicker_1.ColorPicker, { color: model.color || 'black', onChange: event => {
+                                    model.setColor(event);
+                                } })] }))] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { onClick: () => {
+                            model.setPosColor(undefined);
+                            model.setNegColor(undefined);
+                            model.setColor(undefined);
+                        }, color: "secondary", variant: "contained", children: "Restore default" }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", type: "submit", onClick: () => {
+                            handleClose();
+                        }, children: "Submit" })] })] }));
 });
 exports.default = SetColorDialog;

package/dist/LinearWiggleDisplay/components/Tooltip.d.ts

@@ -1,4 +1,3 @@
-import React from 'react';
 import type { TooltipContentsComponent } from '../../Tooltip';
 import type { Feature } from '@jbrowse/core/util';
 type Coord = [number, number];
@@ -11,6 +10,6 @@ declare const WiggleTooltip: (props: {
     clientMouseCoord: Coord;
     clientRect?: DOMRect;
     TooltipContents?: TooltipContentsComponent;
-}) => React.JSX.Element;
+}) => import("react/jsx-runtime").JSX.Element;
 export default WiggleTooltip;
 export { default as Tooltip } from '../../Tooltip';

package/dist/LinearWiggleDisplay/components/Tooltip.js

@@ -4,12 +4,13 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.Tooltip = void 0;
-const react_1 = __importDefault(require("react"));
+const jsx_runtime_1 = require("react/jsx-runtime");
+const react_1 = require("react");
 const mobx_react_1 = require("mobx-react");
 const Tooltip_1 = __importDefault(require("../../Tooltip"));
 const util_1 = require("../../util");
 const en = (n) => n.toLocaleString('en-US');
-const TooltipContents = react_1.default.forwardRef(function TooltipContents2({ feature }, ref) {
+const TooltipContents = (0, react_1.forwardRef)(function TooltipContents2({ feature }, ref) {
     const start = feature.get('start') + 1;
     const end = feature.get('end');
     const refName = feature.get('refName');
@@ -21,23 +22,10 @@ const TooltipContents = react_1.default.forwardRef(function TooltipContents2({ f
     ]
         .filter(f => !!f)
         .join(':');
-    return feature.get('summary') !== undefined ? (react_1.default.createElement("div", { ref: ref },
-        loc,
-        react_1.default.createElement("br", null),
-        "Max: ",
-        (0, util_1.toP)(feature.get('maxScore')),
-        react_1.default.createElement("br", null),
-        "Avg: ",
-        (0, util_1.toP)(feature.get('score')),
-        react_1.default.createElement("br", null),
-        "Min: ",
-        (0, util_1.toP)(feature.get('minScore')))) : (react_1.default.createElement("div", { ref: ref },
-        loc,
-        react_1.default.createElement("br", null),
-        `${(0, util_1.toP)(feature.get('score'))}`));
+    return feature.get('summary') !== undefined ? ((0, jsx_runtime_1.jsxs)("div", { ref: ref, children: [loc, (0, jsx_runtime_1.jsx)("br", {}), "Max: ", (0, util_1.toP)(feature.get('maxScore')), (0, jsx_runtime_1.jsx)("br", {}), "Avg: ", (0, util_1.toP)(feature.get('score')), (0, jsx_runtime_1.jsx)("br", {}), "Min: ", (0, util_1.toP)(feature.get('minScore'))] })) : ((0, jsx_runtime_1.jsxs)("div", { ref: ref, children: [loc, (0, jsx_runtime_1.jsx)("br", {}), `${(0, util_1.toP)(feature.get('score'))}`] }));
 });
 const WiggleTooltip = (0, mobx_react_1.observer)(function (props) {
-    return react_1.default.createElement(Tooltip_1.default, { TooltipContents: TooltipContents, ...props });
+    return (0, jsx_runtime_1.jsx)(Tooltip_1.default, { TooltipContents: TooltipContents, ...props });
 });
 exports.default = WiggleTooltip;
 var Tooltip_2 = require("../../Tooltip");

package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts

@@ -1,6 +1,5 @@
-import React from 'react';
 import type { WiggleDisplayModel } from '../model';
 declare const LinearWiggleDisplay: (props: {
     model: WiggleDisplayModel;
-}) => React.JSX.Element;
+}) => import("react/jsx-runtime").JSX.Element;
 export default LinearWiggleDisplay;

package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js

@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importDefault(require("react"));
+const jsx_runtime_1 = require("react/jsx-runtime");
 const configuration_1 = require("@jbrowse/core/configuration");
 const util_1 = require("@jbrowse/core/util");
 const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
@@ -17,16 +17,13 @@ const LinearWiggleDisplay = (0, mobx_react_1.observer)((props) => {
     const left = trackLabels === 'overlapping'
         ? (0, util_1.measureText)((0, configuration_1.getConf)(track, 'name'), 12.8) + 100
         : 50;
-    return (react_1.default.createElement("div", null,
-        react_1.default.createElement(plugin_linear_genome_view_1.BaseLinearDisplayComponent, { ...props }),
-        stats && needsScalebar ? (react_1.default.createElement("svg", { style: {
-                position: 'absolute',
-                top: 0,
-                left,
-                pointerEvents: 'none',
-                height,
-                width: 50,
-            } },
-            react_1.default.createElement(YScaleBar_1.default, { model: model }))) : null));
+    return ((0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)(plugin_linear_genome_view_1.BaseLinearDisplayComponent, { ...props }), stats && needsScalebar ? ((0, jsx_runtime_1.jsx)("svg", { style: {
+                    position: 'absolute',
+                    top: 0,
+                    left,
+                    pointerEvents: 'none',
+                    height,
+                    width: 50,
+                }, children: (0, jsx_runtime_1.jsx)(YScaleBar_1.default, { model: model }) })) : null] }));
 });
 exports.default = LinearWiggleDisplay;

package/dist/LinearWiggleDisplay/index.js

@@ -15,13 +15,23 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
 }) : function(o, v) {
     o["default"] = v;
 });
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };

package/dist/LinearWiggleDisplay/model.d.ts

@@ -38,7 +38,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
                 status?: string;
                 reactElement?: React.ReactElement;
             };
-        }) => import("react").JSX.Element | undefined;
+        }) => import("react/jsx-runtime").JSX.Element | undefined;
         renderProps: any;
     } & {
         doReload(): void;
@@ -190,13 +190,13 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
 } & {
     readonly statsReadyAndRegionNotTooLarge: boolean;
     regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
+    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
 } & {
     featureIdUnderMouse: undefined | string;
     contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
 } & {
-    readonly DisplayMessageComponent: import("react").FC<any> | undefined;
-    readonly blockType: "dynamicBlocks" | "staticBlocks";
+    readonly DisplayMessageComponent: undefined | React.FC<any>;
+    readonly blockType: "staticBlocks" | "dynamicBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
     readonly renderDelay: number;
@@ -223,7 +223,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     renderProps(): any;
 } & {
-    renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
+    renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
     afterAttach(): void;
 } & {
     message: undefined | string;
@@ -339,7 +339,17 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     readonly quantitativeStatsReady: boolean;
 } & {
     trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
+        type: string;
+        label?: undefined;
+        icon?: undefined;
+        subMenu?: undefined;
+        onClick?: undefined;
+        checked?: undefined;
+    } | {
         label: string;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
         subMenu: ({
             label: string;
             subMenu: {
@@ -362,8 +372,8 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
             subMenu?: undefined;
         })[];
         type?: undefined;
-        checked?: undefined;
         onClick?: undefined;
+        checked?: undefined;
     } | {
         label: string;
         subMenu: {
@@ -373,10 +383,23 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
             onClick: () => void;
         }[];
         type?: undefined;
-        checked?: undefined;
+        icon?: undefined;
         onClick?: undefined;
+        checked?: undefined;
+    } | {
+        label: string;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
+        onClick: () => void;
+        type?: undefined;
+        subMenu?: undefined;
+        checked?: undefined;
     } | {
         type: string;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
         label: string;
         checked: boolean;
         onClick: () => void;
@@ -384,7 +407,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     })[];
 } & {
     afterAttach(): void;
-    renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
+    renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 export type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
 export type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;