@jbrowse/plugin-wiggle 2.11.2 → 2.12.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (61) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.d.ts +1 -1
  2. package/dist/BigWigAdapter/index.js +1 -1
  3. package/dist/CreateMultiWiggleExtension/index.js +1 -1
  4. package/dist/DensityRenderer/index.js +1 -1
  5. package/dist/LinePlotRenderer/configSchema.d.ts +1 -3
  6. package/dist/LinePlotRenderer/index.js +1 -1
  7. package/dist/LinearWiggleDisplay/index.js +1 -1
  8. package/dist/LinearWiggleDisplay/models/configSchema.d.ts +1 -3
  9. package/dist/LinearWiggleDisplay/models/configSchema.js +1 -1
  10. package/dist/LinearWiggleDisplay/models/model.d.ts +52 -40
  11. package/dist/LinearWiggleDisplay/models/renderSvg.js +1 -2
  12. package/dist/MultiDensityRenderer/index.js +1 -1
  13. package/dist/MultiLineRenderer/index.js +1 -1
  14. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js +31 -7
  15. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +1 -1
  16. package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.js +9 -14
  17. package/dist/MultiLinearWiggleDisplay/components/util.js +3 -4
  18. package/dist/MultiLinearWiggleDisplay/index.js +1 -1
  19. package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts +1 -3
  20. package/dist/MultiLinearWiggleDisplay/models/configSchema.js +1 -1
  21. package/dist/MultiLinearWiggleDisplay/models/model.d.ts +44 -50
  22. package/dist/MultiLinearWiggleDisplay/models/model.js +1 -2
  23. package/dist/MultiLinearWiggleDisplay/models/renderSvg.js +1 -2
  24. package/dist/MultiQuantitativeTrack/index.js +1 -1
  25. package/dist/MultiRowLineRenderer/index.js +1 -1
  26. package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +0 -3
  27. package/dist/MultiRowXYPlotRenderer/index.js +1 -1
  28. package/dist/MultiWiggleAdapter/index.js +1 -1
  29. package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +5 -2
  30. package/dist/MultiWiggleAddTrackWorkflow/index.js +1 -1
  31. package/dist/MultiXYPlotRenderer/index.js +1 -1
  32. package/dist/QuantitativeTrack/index.js +1 -1
  33. package/dist/WiggleBaseRenderer.d.ts +5 -6
  34. package/dist/XYPlotRenderer/index.js +1 -1
  35. package/dist/drawDensity.js +1 -2
  36. package/dist/drawLine.js +1 -2
  37. package/dist/drawXY.js +1 -2
  38. package/dist/index.d.ts +1 -822
  39. package/dist/shared/SetMinMaxDialog.js +1 -1
  40. package/dist/shared/configShared.d.ts +1 -3
  41. package/dist/shared/configShared.js +1 -1
  42. package/dist/shared/modelShared.d.ts +49 -55
  43. package/dist/shared/modelShared.js +1 -1
  44. package/dist/util.d.ts +1 -0
  45. package/dist/util.js +9 -9
  46. package/esm/BigWigAdapter/BigWigAdapter.d.ts +1 -1
  47. package/esm/LinePlotRenderer/configSchema.d.ts +1 -3
  48. package/esm/LinearWiggleDisplay/models/configSchema.d.ts +1 -3
  49. package/esm/LinearWiggleDisplay/models/model.d.ts +52 -40
  50. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js +8 -7
  51. package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.js +9 -14
  52. package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts +1 -3
  53. package/esm/MultiLinearWiggleDisplay/models/model.d.ts +44 -50
  54. package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +0 -3
  55. package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +4 -1
  56. package/esm/WiggleBaseRenderer.d.ts +5 -6
  57. package/esm/index.d.ts +1 -822
  58. package/esm/shared/configShared.d.ts +1 -3
  59. package/esm/shared/modelShared.d.ts +49 -55
  60. package/esm/util.d.ts +1 -0
  61. package/package.json +2 -2
@@ -11,7 +11,7 @@ export default class BigWigAdapter extends BaseFeatureDataAdapter {
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  private setupPre;
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  setup(opts?: BaseOptions): Promise<{
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  bigwig: BigWig;
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- header: import("@gmod/bbi").Header;
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+ header: Awaited<ReturnType<BigWig["getHeader"]>>;
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  }>;
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  getRefNames(opts?: BaseOptions): Promise<string[]>;
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  refIdToName(refId: number): Promise<string>;
@@ -26,6 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = BigWigAdapterF;
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  const AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
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  const configSchema_1 = __importDefault(require("./configSchema"));
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  function BigWigAdapterF(pluginManager) {
@@ -41,4 +42,3 @@ function BigWigAdapterF(pluginManager) {
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  getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./BigWigAdapter'))).then(r => r.default),
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  }));
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  }
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- exports.default = BigWigAdapterF;
@@ -23,6 +23,7 @@ var __importStar = (this && this.__importStar) || function (mod) {
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  return result;
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = CreateMultiWiggleExtensionF;
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  const react_1 = require("react");
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  const configuration_1 = require("@jbrowse/core/configuration");
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  const util_1 = require("@jbrowse/core/util");
@@ -82,4 +83,3 @@ function CreateMultiWiggleExtensionF(pm) {
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  ];
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  });
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  }
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- exports.default = CreateMultiWiggleExtensionF;
@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = DensityRendererF;
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  const configSchema_1 = __importDefault(require("./configSchema"));
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  const DensityRenderer_1 = __importDefault(require("./DensityRenderer"));
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  const WiggleRendering_1 = __importDefault(require("../WiggleRendering"));
@@ -14,4 +15,3 @@ function DensityRendererF(pluginManager) {
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  pluginManager,
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  }));
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  }
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- exports.default = DensityRendererF;
@@ -11,9 +11,7 @@ declare const configSchema: import("@jbrowse/core/configuration/configurationSch
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  color: {
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  type: string;
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  description: string;
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- defaultValue: string; /**
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- * #baseConfiguration
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- */
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+ defaultValue: string;
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  };
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  posColor: {
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  type: string;
@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = LinePlotRendererF;
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  const configSchema_1 = __importDefault(require("./configSchema"));
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  const WiggleRendering_1 = __importDefault(require("../WiggleRendering"));
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  const LinePlotRenderer_1 = __importDefault(require("./LinePlotRenderer"));
@@ -14,4 +15,3 @@ function LinePlotRendererF(pluginManager) {
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  pluginManager,
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  }));
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  }
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- exports.default = LinePlotRendererF;
@@ -27,6 +27,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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  exports.modelFactory = exports.ReactComponent = exports.Tooltip = void 0;
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+ exports.default = LinearWiggleDisplayF;
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  const DisplayType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/DisplayType"));
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  const configSchema_1 = __importDefault(require("./models/configSchema"));
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  const model_1 = __importDefault(require("./models/model"));
@@ -46,7 +47,6 @@ function LinearWiggleDisplayF(pluginManager) {
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  });
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  });
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  }
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- exports.default = LinearWiggleDisplayF;
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  var Tooltip_1 = require("./components/Tooltip");
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  Object.defineProperty(exports, "Tooltip", { enumerable: true, get: function () { return __importDefault(Tooltip_1).default; } });
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  var WiggleDisplayComponent_1 = require("./components/WiggleDisplayComponent");
@@ -69,9 +69,7 @@ export default function WiggleConfigFactory(pluginManager: PluginManager): impor
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  type: string;
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  defaultValue: number;
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  description: string;
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- }; /**
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- * #slot
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- */
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+ };
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  height: {
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  type: string;
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  defaultValue: number;
@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = WiggleConfigFactory;
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  const configuration_1 = require("@jbrowse/core/configuration");
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  const mobx_state_tree_1 = require("mobx-state-tree");
8
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  // locals
@@ -41,4 +42,3 @@ function WiggleConfigFactory(pluginManager) {
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  explicitlyTyped: true,
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  });
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  }
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- exports.default = WiggleConfigFactory;
@@ -24,7 +24,9 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  refName: import("mobx-state-tree").ISimpleType<string>;
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  start: import("mobx-state-tree").ISimpleType<number>;
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  end: import("mobx-state-tree").ISimpleType<number>;
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- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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+ reversed: import("mobx-state-tree" /**
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+ * #getter
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+ */).IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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  } & {
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  assemblyName: import("mobx-state-tree").ISimpleType<string>;
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  }, {
@@ -36,7 +38,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
36
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  }, {
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  renderInProgress: AbortController | undefined;
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  filled: boolean;
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- reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
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+ reactElement: React.ReactElement | undefined;
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  features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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  layout: any;
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  status: string;
@@ -45,25 +47,25 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  maxHeightReached: boolean;
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  ReactComponent: ({ model, }: {
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  model: {
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- error?: unknown;
50
+ error? /**
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+ * #getter
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+ */: unknown;
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  reload: () => void;
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  message: React.ReactNode;
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- filled?: boolean | undefined;
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- status?: string | undefined;
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- reactElement?: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
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+ filled?: boolean;
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+ status?: string;
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+ reactElement?: React.ReactElement;
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  };
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  }) => React.JSX.Element | undefined;
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  renderProps: any;
57
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  } & {
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  doReload(): void;
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  afterAttach(): void;
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- setStatus(message: string): void; /**
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- * #method
62
- */
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+ setStatus(message: string): void;
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  setLoading(abortController: AbortController): void;
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  setMessage(messageText: string): void;
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  setRendered(props: {
66
- reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>>;
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+ reactElement: React.ReactElement;
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  features: Map<string, import("@jbrowse/core/util").Feature>;
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  layout: any;
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  maxHeightReached: boolean;
@@ -134,7 +136,13 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  id: string;
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  type: string;
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  rpcDriverName: string | undefined;
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- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
139
+ } & import(
140
+ /**
141
+ * #stateModel LinearWiggleDisplay
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+ * extends
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+ * - [SharedWiggleMixin](../sharedwigglemixin)
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+ */
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+ "mobx-state-tree/dist/internal").NonEmptyObject & {
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  rendererTypeName: string;
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  error: unknown;
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  message: string | undefined;
@@ -146,9 +154,11 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  rendererTypeName: string;
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  error: unknown;
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  message: string | undefined;
149
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
150
- onHorizontalScroll?: Function | undefined;
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- blockState?: Record<string, any> | undefined;
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+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree" /**
158
+ * #getter
159
+ */)._NotCustomized>>;
160
+ onHorizontalScroll?: Function;
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+ blockState?: Record<string, any>;
152
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  }>;
153
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  readonly DisplayBlurb: React.FC<{
154
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  model: {
@@ -171,16 +181,14 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  }> | null;
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  readonly adapterConfig: any;
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  readonly parentTrack: any;
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- renderProps(): any; /**
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- * #getter
176
- */
184
+ renderProps(): any;
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  readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
178
- readonly DisplayMessageComponent: React.FC<any> | undefined;
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+ readonly DisplayMessageComponent: undefined | React.FC<any>;
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  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
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  regionCannotBeRendered(): null;
182
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  } & {
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- setMessage(arg?: string | undefined): void;
191
+ setMessage(arg?: string): void;
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  setError(error?: unknown): void;
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  setRpcDriverName(rpcDriverName: string): void;
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  reload(): void;
@@ -193,8 +201,8 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  setHeight(displayHeight: number): number;
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  resizeHeight(distance: number): number;
195
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  } & {
196
- featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
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- featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
204
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
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+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
198
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  currStatsBpPerPx: number;
199
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  } & {
200
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  readonly currentBytesRequested: number;
@@ -206,12 +214,10 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  afterAttach(): void;
207
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  } & {
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  setCurrStatsBpPerPx(n: number): void;
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- setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
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+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
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  getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
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  setFeatureDensityStatsP(arg: any): void;
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- setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void; /**
213
- * #method
214
- */
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+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
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  clearFeatureDensityStats(): void;
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  } & {
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  readonly regionTooLarge: boolean;
@@ -220,8 +226,8 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
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  regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): React.JSX.Element | null;
222
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  } & {
223
- featureIdUnderMouse: string | undefined;
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- contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
229
+ featureIdUnderMouse: undefined | string;
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+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
225
231
  } & {
226
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  readonly blockType: "dynamicBlocks" | "staticBlocks";
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  readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
@@ -229,7 +235,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  readonly renderDelay: number;
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  readonly TooltipComponent: React.FC<any>;
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  readonly selectedFeatureId: string | undefined;
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- readonly DisplayMessageComponent: React.FC<any> | undefined;
238
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
233
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  } & {
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  readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
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  readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
@@ -242,8 +248,8 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
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  navToFeature(feature: import("@jbrowse/core/util").Feature): void;
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  clearFeatureSelection(): void;
245
- setFeatureIdUnderMouse(feature?: string | undefined): void;
246
- setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
251
+ setFeatureIdUnderMouse(feature?: string): void;
252
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
247
253
  } & {
248
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  reload(): Promise<void>;
249
255
  } & {
@@ -254,31 +260,31 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
254
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  renderSvg(opts: ExportSvgDisplayOptions): Promise<React.JSX.Element>;
255
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  afterAttach(): void;
256
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  } & {
257
- message: string | undefined;
263
+ message: undefined | string;
258
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  stats: {
259
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  scoreMin: number;
260
266
  scoreMax: number;
261
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  } | undefined;
262
- statsFetchInProgress: AbortController | undefined;
268
+ statsFetchInProgress: undefined | AbortController;
263
269
  } & {
264
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  updateQuantitativeStats(stats: {
265
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  scoreMin: number;
266
272
  scoreMax: number;
267
273
  }): void;
268
- setColor(color?: string | undefined): void;
269
- setPosColor(color?: string | undefined): void;
270
- setNegColor(color?: string | undefined): void;
274
+ setColor(color?: string): void;
275
+ setPosColor(color?: string): void;
276
+ setNegColor(color?: string): void;
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  setLoading(aborter: AbortController): void;
272
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  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
273
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  setResolution(res: number): void;
274
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  setFill(fill: number): void;
275
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  toggleLogScale(): void;
276
- setScaleType(scale?: string | undefined): void;
282
+ setScaleType(scale?: string): void;
277
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  setSummaryScoreMode(val: string): void;
278
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  setAutoscale(val: string): void;
279
- setMaxScore(val?: number | undefined): void;
285
+ setMaxScore(val?: number): void;
280
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  setRendererType(val: string): void;
281
- setMinScore(val?: number | undefined): void;
287
+ setMinScore(val?: number): void;
282
288
  toggleCrossHatches(): void;
283
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  setCrossHatches(cross: boolean): void;
284
290
  } & {
@@ -293,7 +299,13 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
293
299
  readonly rendererConfig: {
294
300
  [x: string]: any;
295
301
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
296
- setSubschema(slotName: string, data: unknown): any;
302
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
303
+ [x: string]: any;
304
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
305
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
306
+ [x: string]: any;
307
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
308
+ } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
297
309
  } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
298
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  readonly autoscaleType: any;
299
311
  } & {
@@ -343,7 +355,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
343
355
  /**
344
356
  * #getter
345
357
  */
346
- readonly TooltipComponent: React.FC<{}>;
358
+ readonly TooltipComponent: React.FC;
347
359
  /**
348
360
  * #getter
349
361
  */
@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
- exports.renderSvg = void 0;
6
+ exports.renderSvg = renderSvg;
7
7
  const react_1 = __importDefault(require("react"));
8
8
  const util_1 = require("@jbrowse/core/util");
9
9
  const mobx_1 = require("mobx");
@@ -17,4 +17,3 @@ async function renderSvg(self, opts, superRenderSvg) {
17
17
  needsScalebar && stats ? (react_1.default.createElement("g", { transform: `translate(${Math.max(-offsetPx, 0)})` },
18
18
  react_1.default.createElement(YScaleBar_1.default, { model: self, orientation: "left" }))) : null));
19
19
  }
20
- exports.renderSvg = renderSvg;
@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
+ exports.default = MultiDensityRendererF;
6
7
  const configSchema_1 = __importDefault(require("./configSchema"));
7
8
  const MultiWiggleRendering_1 = __importDefault(require("../MultiWiggleRendering"));
8
9
  const MultiDensityRenderer_1 = __importDefault(require("./MultiDensityRenderer"));
@@ -14,4 +15,3 @@ function MultiDensityRendererF(pluginManager) {
14
15
  pluginManager,
15
16
  }));
16
17
  }
17
- exports.default = MultiDensityRendererF;
@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
+ exports.default = MultiLineRendererF;
6
7
  const MultiWiggleRendering_1 = __importDefault(require("../MultiWiggleRendering"));
7
8
  const MultiLineRenderer_1 = __importDefault(require("./MultiLineRenderer"));
8
9
  const configSchema_1 = __importDefault(require("./configSchema"));
@@ -14,4 +15,3 @@ function MultiLineRendererF(pluginManager) {
14
15
  pluginManager,
15
16
  }));
16
17
  }
17
- exports.default = MultiLineRendererF;
@@ -1,9 +1,32 @@
1
1
  "use strict";
2
+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
+ if (k2 === undefined) k2 = k;
4
+ var desc = Object.getOwnPropertyDescriptor(m, k);
5
+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
+ desc = { enumerable: true, get: function() { return m[k]; } };
7
+ }
8
+ Object.defineProperty(o, k2, desc);
9
+ }) : (function(o, m, k, k2) {
10
+ if (k2 === undefined) k2 = k;
11
+ o[k2] = m[k];
12
+ }));
13
+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
+ Object.defineProperty(o, "default", { enumerable: true, value: v });
15
+ }) : function(o, v) {
16
+ o["default"] = v;
17
+ });
18
+ var __importStar = (this && this.__importStar) || function (mod) {
19
+ if (mod && mod.__esModule) return mod;
20
+ var result = {};
21
+ if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
+ __setModuleDefault(result, mod);
23
+ return result;
24
+ };
2
25
  var __importDefault = (this && this.__importDefault) || function (mod) {
3
26
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
27
  };
5
28
  Object.defineProperty(exports, "__esModule", { value: true });
6
- const react_1 = __importDefault(require("react"));
29
+ const react_1 = __importStar(require("react"));
7
30
  const material_1 = require("@mui/material");
8
31
  const mobx_react_1 = require("mobx-react");
9
32
  const mui_1 = require("tss-react/mui");
@@ -18,18 +41,19 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
18
41
  color: theme.palette.grey[500],
19
42
  },
20
43
  }));
21
- // draggable dialog demo https://mui.com/material-ui/react-dialog/#draggable-dialog
22
44
  function PaperComponent(props) {
23
- return (react_1.default.createElement(react_draggable_1.default, { handle: "#draggable-dialog-title", cancel: '[class*="MuiDialogContent-root"]' },
24
- react_1.default.createElement(material_1.Paper, { ...props })));
45
+ const ref = (0, react_1.useRef)(null);
46
+ return (react_1.default.createElement(react_draggable_1.default, { nodeRef: ref, cancel: '[class*="MuiDialogContent-root"]',
47
+ // @ts-expect-error
48
+ onStart: arg => { var _a, _b; return (_b = (_a = arg.target) === null || _a === void 0 ? void 0 : _a.className) === null || _b === void 0 ? void 0 : _b.includes('MuiDialogTitle'); } },
49
+ react_1.default.createElement(material_1.Paper, { ref: ref, ...props })));
25
50
  }
26
51
  const DraggableDialog = (0, mobx_react_1.observer)(function DraggableDialog(props) {
27
52
  const { classes } = useStyles();
28
53
  const { title, children, onClose } = props;
29
- return (react_1.default.createElement(material_1.Dialog, { ...props, PaperComponent: PaperComponent, "aria-labelledby": "draggable-dialog-title" // this area is important for the draggable functionality
30
- },
54
+ return (react_1.default.createElement(material_1.Dialog, { ...props, PaperComponent: PaperComponent },
31
55
  react_1.default.createElement(material_1.ScopedCssBaseline, null,
32
- react_1.default.createElement(material_1.DialogTitle, { style: { cursor: 'move' }, id: "draggable-dialog-title" },
56
+ react_1.default.createElement(material_1.DialogTitle, { style: { cursor: 'move' } },
33
57
  title,
34
58
  onClose ? (react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: () => {
35
59
  // @ts-expect-error
@@ -26,6 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
26
26
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
27
  };
28
28
  Object.defineProperty(exports, "__esModule", { value: true });
29
+ exports.default = SetColorDialog;
29
30
  const react_1 = __importStar(require("react"));
30
31
  const material_1 = require("@mui/material");
31
32
  const mui_1 = require("tss-react/mui");
@@ -73,4 +74,3 @@ function SetColorDialog({ model, handleClose, }) {
73
74
  handleClose();
74
75
  } }, "Submit"))));
75
76
  }
76
- exports.default = SetColorDialog;
@@ -31,15 +31,15 @@ const material_1 = require("@mui/material");
31
31
  const util_1 = require("@jbrowse/core/util");
32
32
  const x_data_grid_1 = require("@mui/x-data-grid");
33
33
  const mui_1 = require("tss-react/mui");
34
- // locals
35
34
  const ColorPicker_1 = __importStar(require("@jbrowse/core/ui/ColorPicker"));
35
+ const ui_1 = require("@jbrowse/core/ui");
36
+ // locals
36
37
  const util_2 = require("./util");
37
38
  // icons
38
39
  const KeyboardDoubleArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowUp"));
39
40
  const KeyboardDoubleArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowDown"));
40
41
  const KeyboardArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardArrowDown"));
41
42
  const KeyboardArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardArrowUp"));
42
- const ui_1 = require("@jbrowse/core/ui");
43
43
  const useStyles = (0, mui_1.makeStyles)()({
44
44
  cell: {
45
45
  whiteSpace: 'nowrap',
@@ -51,7 +51,6 @@ function SourcesGrid({ rows, onChange, showTips, }) {
51
51
  const { classes } = useStyles();
52
52
  const [anchorEl, setAnchorEl] = (0, react_1.useState)(null);
53
53
  const [selected, setSelected] = (0, react_1.useState)([]);
54
- // @ts-expect-error
55
54
  const { name: _name, color: _color, baseUri: _baseUri, ...rest } = rows[0];
56
55
  const [widgetColor, setWidgetColor] = (0, react_1.useState)('blue');
57
56
  const [currSort, setCurrSort] = (0, react_1.useState)({
@@ -100,33 +99,29 @@ function SourcesGrid({ rows, onChange, showTips, }) {
100
99
  },
101
100
  {
102
101
  field: 'name',
103
- sortingOrder: [null],
104
102
  headerName: 'Name',
105
103
  width: (0, util_1.measureGridWidth)(rows.map(r => r.name)),
106
104
  },
107
105
  ...Object.keys(rest).map(val => ({
108
106
  field: val,
109
- sortingOrder: [null],
110
- renderCell: (params) => {
111
- const { value } = params;
112
- return (react_1.default.createElement("div", { className: classes.cell },
113
- react_1.default.createElement(ui_1.SanitizedHTML, { html: (0, util_1.getStr)(value) })));
114
- },
115
- // @ts-ignore
116
- width: (0, util_1.measureGridWidth)(rows.map(r => r[val])),
107
+ renderCell: ({ value }) => (react_1.default.createElement("div", { className: classes.cell },
108
+ react_1.default.createElement(ui_1.SanitizedHTML, { html: (0, util_1.getStr)(value) }))),
109
+ width: (0, util_1.measureGridWidth)(rows.map(r => `${r[val]}`)),
117
110
  })),
118
111
  ], sortModel: [
119
112
  /* we control the sort as a controlled component using onSortModelChange */
120
113
  ], onSortModelChange: args => {
121
114
  const sort = args[0];
115
+ // this idx%2 flip flops the sorting order, we could inspect args
116
+ // for sort direction asc or desc but this is just a simplified
117
+ // thing since we are controlling sort instead of the default data
118
+ // grid sort anyways
122
119
  const idx = (currSort.idx + 1) % 2;
123
120
  const field = (sort === null || sort === void 0 ? void 0 : sort.field) || currSort.field;
124
121
  setCurrSort({ idx, field });
125
122
  onChange(field
126
123
  ? [...rows].sort((a, b) => {
127
- // @ts-expect-error
128
124
  const aa = (0, util_1.getStr)(a[field]);
129
- // @ts-expect-error
130
125
  const bb = (0, util_1.getStr)(b[field]);
131
126
  return idx === 1
132
127
  ? aa.localeCompare(bb)
@@ -1,6 +1,8 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.getOffset = exports.moveDown = exports.moveUp = void 0;
3
+ exports.moveUp = moveUp;
4
+ exports.moveDown = moveDown;
5
+ exports.getOffset = getOffset;
4
6
  const util_1 = require("@jbrowse/core/util");
5
7
  const configuration_1 = require("@jbrowse/core/configuration");
6
8
  function moveUp(arr, sel, by = 1) {
@@ -17,7 +19,6 @@ function moveUp(arr, sel, by = 1) {
17
19
  }
18
20
  return arr;
19
21
  }
20
- exports.moveUp = moveUp;
21
22
  function moveDown(arr, sel, by = 1) {
22
23
  const idxs = sel
23
24
  .map(l => arr.findIndex(v => v.name === l))
@@ -32,7 +33,6 @@ function moveDown(arr, sel, by = 1) {
32
33
  }
33
34
  return arr;
34
35
  }
35
- exports.moveDown = moveDown;
36
36
  const trackLabelFontSize = 12.8;
37
37
  function getOffset(model) {
38
38
  const { prefersOffset } = model;
@@ -43,4 +43,3 @@ function getOffset(model) {
43
43
  ? (0, util_1.measureText)(trackName, trackLabelFontSize) + 100
44
44
  : 10;
45
45
  }
46
- exports.getOffset = getOffset;
@@ -26,6 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
26
26
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
27
  };
28
28
  Object.defineProperty(exports, "__esModule", { value: true });
29
+ exports.default = MultiLinearWiggleDisplayF;
29
30
  const DisplayType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/DisplayType"));
30
31
  const configSchema_1 = __importDefault(require("./models/configSchema"));
31
32
  const model_1 = __importDefault(require("./models/model"));
@@ -44,4 +45,3 @@ function MultiLinearWiggleDisplayF(pluginManager) {
44
45
  });
45
46
  });
46
47
  }
47
- exports.default = MultiLinearWiggleDisplayF;
@@ -78,9 +78,7 @@ export default function WiggleConfigFactory(pluginManager: PluginManager): impor
78
78
  type: string;
79
79
  defaultValue: number;
80
80
  description: string;
81
- }; /**
82
- * #slot
83
- */
81
+ };
84
82
  mouseover: {
85
83
  type: string;
86
84
  description: string;
@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
+ exports.default = WiggleConfigFactory;
6
7
  const configuration_1 = require("@jbrowse/core/configuration");
7
8
  const mobx_state_tree_1 = require("mobx-state-tree");
8
9
  // locals
@@ -59,4 +60,3 @@ function WiggleConfigFactory(pluginManager) {
59
60
  explicitlyTyped: true,
60
61
  });
61
62
  }
62
- exports.default = WiggleConfigFactory;