@jbrowse/plugin-wiggle 2.11.1 → 2.11.2

package/dist/LinePlotRenderer/LinePlotRenderer.d.ts

@@ -1,6 +1,7 @@
+import { Feature } from '@jbrowse/core/util';
 import WiggleBaseRenderer, { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
 export default class LinePlotRenderer extends WiggleBaseRenderer {
     draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): Promise<{
-        reducedFeatures: import("@jbrowse/core/util").Feature[];
+        reducedFeatures: Feature[];
     }>;
 }

package/dist/LinePlotRenderer/LinePlotRenderer.js

@@ -3,15 +3,20 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+const configuration_1 = require("@jbrowse/core/configuration");
 const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
 const util_1 = require("../util");
 const drawLine_1 = require("../drawLine");
 class LinePlotRenderer extends WiggleBaseRenderer_1.default {
     async draw(ctx, props) {
+        const { config } = props;
+        const c = (0, configuration_1.readConfObject)(config, 'color');
         return (0, drawLine_1.drawLine)(ctx, {
             ...props,
             offset: util_1.YSCALEBAR_LABEL_OFFSET,
-            colorCallback: () => 'grey',
+            colorCallback: c === '#f0f'
+                ? () => 'grey'
+                : (feature) => (0, configuration_1.readConfObject)(config, 'color', { feature }),
         });
     }
 }

package/dist/LinearWiggleDisplay/components/SetColorDialog.js

@@ -33,8 +33,8 @@ const SetColorDialog = (0, mobx_react_1.observer)(function SetColorDialog({ mode
     return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: handleClose, title: "Set color" },
         react_1.default.createElement(material_1.DialogContent, null,
             react_1.default.createElement(material_1.Typography, null, "Select either an overall color, or the positive/negative colors. Note that density renderers only work properly with positive/negative colors"),
-            react_1.default.createElement(material_1.FormControlLabel, { checked: !posneg, onClick: () => setPosNeg(false), control: react_1.default.createElement(material_1.Radio, null), label: 'Overall color' }),
-            react_1.default.createElement(material_1.FormControlLabel, { checked: posneg, onClick: () => setPosNeg(true), control: react_1.default.createElement(material_1.Radio, null), label: 'Positive/negative color' }),
+            react_1.default.createElement(material_1.FormControlLabel, { checked: !posneg, onClick: () => setPosNeg(false), control: react_1.default.createElement(material_1.Radio, null), label: "Overall color" }),
+            react_1.default.createElement(material_1.FormControlLabel, { checked: posneg, onClick: () => setPosNeg(true), control: react_1.default.createElement(material_1.Radio, null), label: "Positive/negative color" }),
             posneg ? (react_1.default.createElement(react_1.default.Fragment, null,
                 react_1.default.createElement(material_1.Typography, null, "Positive color"),
                 react_1.default.createElement(ColorPicker_1.ColorPicker, { color: model.posColor || 'black', onChange: event => {

package/dist/LinearWiggleDisplay/models/configSchema.d.ts

@@ -69,7 +69,9 @@ export default function WiggleConfigFactory(pluginManager: PluginManager): impor
         type: string;
         defaultValue: number;
         description: string;
-    };
+    }; /**
+     * #slot
+     */
     height: {
         type: string;
         defaultValue: number;
@@ -81,4 +83,9 @@ export default function WiggleConfigFactory(pluginManager: PluginManager): impor
         defaultValue: string;
         contextVariable: string[];
     };
+    jexlFilters: {
+        type: string;
+        description: string;
+        defaultValue: never[];
+    };
 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;

package/dist/LinearWiggleDisplay/models/model.d.ts

@@ -95,6 +95,11 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
             defaultValue: string;
             contextVariable: string[];
         };
+        jexlFilters: {
+            type: string;
+            description: string;
+            defaultValue: never[];
+        };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 } & {
     selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -235,6 +240,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
     deleteBlock(key: string): void;
     selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+    navToFeature(feature: import("@jbrowse/core/util").Feature): void;
     clearFeatureSelection(): void;
     setFeatureIdUnderMouse(feature?: string | undefined): void;
     setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;

package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts

@@ -78,11 +78,18 @@ export default function WiggleConfigFactory(pluginManager: PluginManager): impor
         type: string;
         defaultValue: number;
         description: string;
-    };
+    }; /**
+     * #slot
+     */
     mouseover: {
         type: string;
         description: string;
         defaultValue: string;
         contextVariable: string[];
     };
+    jexlFilters: {
+        type: string;
+        description: string;
+        defaultValue: never[];
+    };
 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;

package/dist/MultiLinearWiggleDisplay/models/model.d.ts

@@ -101,7 +101,14 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
             defaultValue: string;
             contextVariable: string[];
         };
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
+        jexlFilters: {
+            type: string;
+            description: string;
+            defaultValue: never[];
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>; /**
+     * #action
+     */
 } & {
     selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
@@ -249,6 +256,7 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
     addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
     deleteBlock(key: string): void;
     selectFeature(feature: Feature): void;
+    navToFeature(feature: Feature): void;
     clearFeatureSelection(): void;
     setFeatureIdUnderMouse(feature?: string | undefined): void;
     setContextMenuFeature(feature?: Feature | undefined): void;

package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts

@@ -16,5 +16,5 @@ export declare class WiggleGetMultiRegionQuantitativeStats extends RpcMethodType
         headers?: Record<string, string>;
         regions: Region[];
         bpPerPx: number;
-    }, rpcDriverClassName: string): Promise<import("@jbrowse/core/util/stats").QuantitativeStats>;
+    }, rpcDriverClassName: string): Promise<any>;
 }

package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js

@@ -8,7 +8,6 @@ const RpcMethodType_1 = __importDefault(require("@jbrowse/core/pluggableElementT
 const serializableFilterChain_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain"));
 const dataAdapterCache_1 = require("@jbrowse/core/data_adapters/dataAdapterCache");
 const util_1 = require("@jbrowse/core/util");
-const BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
 class WiggleGetMultiRegionQuantitativeStats extends RpcMethodType_1.default {
     constructor() {
         super(...arguments);
@@ -44,10 +43,8 @@ class WiggleGetMultiRegionQuantitativeStats extends RpcMethodType_1.default {
         const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
         const { regions, adapterConfig, sessionId } = deserializedArgs;
         const { dataAdapter } = await (0, dataAdapterCache_1.getAdapter)(pm, sessionId, adapterConfig);
-        if (dataAdapter instanceof BaseAdapter_1.BaseFeatureDataAdapter) {
-            return dataAdapter.getMultiRegionQuantitativeStats(regions, deserializedArgs);
-        }
-        throw new Error('Data adapter not found');
+        // @ts-expect-error
+        return dataAdapter.getMultiRegionQuantitativeStats(regions, deserializedArgs);
     }
 }
 exports.WiggleGetMultiRegionQuantitativeStats = WiggleGetMultiRegionQuantitativeStats;

package/dist/index.d.ts

@@ -148,6 +148,11 @@ export default class WigglePlugin extends Plugin {
                         defaultValue: string;
                         contextVariable: string[];
                     };
+                    jexlFilters: {
+                        type: string;
+                        description: string;
+                        defaultValue: never[];
+                    };
                 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">> & import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
                 selectedRendering: string;
                 resolution: number;
@@ -280,6 +285,7 @@ export default class WigglePlugin extends Plugin {
                 addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
                 deleteBlock(key: string): void;
                 selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+                navToFeature(feature: import("@jbrowse/core/util").Feature): void;
                 clearFeatureSelection(): void;
                 setFeatureIdUnderMouse(feature?: string | undefined): void;
                 setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
@@ -525,6 +531,11 @@ export default class WigglePlugin extends Plugin {
                         defaultValue: string;
                         contextVariable: string[];
                     };
+                    jexlFilters: {
+                        type: string;
+                        description: string;
+                        defaultValue: never[];
+                    };
                 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
             } & {
                 selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -658,6 +669,7 @@ export default class WigglePlugin extends Plugin {
                 addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
                 deleteBlock(key: string): void;
                 selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+                navToFeature(feature: import("@jbrowse/core/util").Feature): void;
                 clearFeatureSelection(): void;
                 setFeatureIdUnderMouse(feature?: string | undefined): void;
                 setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;

package/dist/shared/configShared.d.ts

@@ -71,7 +71,9 @@ export default function sharedWiggleConfigFactory(): import("@jbrowse/core/confi
     fetchSizeLimit: {
         type: string;
         defaultValue: number;
-        description: string;
+        description: string; /**
+         * #slot
+         */
     };
     height: {
         type: string;
@@ -84,4 +86,9 @@ export default function sharedWiggleConfigFactory(): import("@jbrowse/core/confi
         defaultValue: string;
         contextVariable: string[];
     };
+    jexlFilters: {
+        type: string;
+        description: string;
+        defaultValue: never[];
+    };
 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>;

package/dist/shared/modelShared.d.ts

@@ -76,7 +76,9 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
         fetchSizeLimit: {
             type: string;
             defaultValue: number;
-            description: string;
+            description: string; /**
+             * #property
+             */
         };
         height: {
             type: string;
@@ -89,6 +91,11 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
             defaultValue: string;
             contextVariable: string[];
         };
+        jexlFilters: {
+            type: string;
+            description: string;
+            defaultValue: never[];
+        };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 } & {
     /**
@@ -268,13 +275,15 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
     readonly featureUnderMouse: Feature | undefined;
     getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
     getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
+    /**
+     * #action
+     */
     searchFeatureByID(id: string): [number, number, number, number] | undefined;
 } & {
     addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
     deleteBlock(key: string): void;
-    selectFeature(feature: Feature): void; /**
-     * #getter
-     */
+    selectFeature(feature: Feature): void;
+    navToFeature(feature: Feature): void;
     clearFeatureSelection(): void;
     setFeatureIdUnderMouse(feature?: string | undefined): void;
     setContextMenuFeature(feature?: Feature | undefined): void;
@@ -283,12 +292,11 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
 } & {
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-    renderProps(): any; /**
-     * #getter
-     */
+    renderProps(): any;
 } & {
-    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>; /**
-     * #getter
+    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
+    /**
+     * #method
      */
     afterAttach(): void;
 } & {
@@ -563,7 +571,9 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
         fetchSizeLimit: {
             type: string;
             defaultValue: number;
-            description: string;
+            description: string; /**
+             * #property
+             */
         };
         height: {
             type: string;
@@ -576,6 +586,11 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
             defaultValue: string;
             contextVariable: string[];
         };
+        jexlFilters: {
+            type: string;
+            description: string;
+            defaultValue: never[];
+        };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 }>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
     type: string;

package/esm/LinePlotRenderer/LinePlotRenderer.d.ts

@@ -1,6 +1,7 @@
+import { Feature } from '@jbrowse/core/util';
 import WiggleBaseRenderer, { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
 export default class LinePlotRenderer extends WiggleBaseRenderer {
     draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): Promise<{
-        reducedFeatures: import("@jbrowse/core/util").Feature[];
+        reducedFeatures: Feature[];
     }>;
 }

package/esm/LinePlotRenderer/LinePlotRenderer.js

@@ -1,12 +1,17 @@
+import { readConfObject } from '@jbrowse/core/configuration';
 import WiggleBaseRenderer from '../WiggleBaseRenderer';
 import { YSCALEBAR_LABEL_OFFSET } from '../util';
 import { drawLine } from '../drawLine';
 export default class LinePlotRenderer extends WiggleBaseRenderer {
     async draw(ctx, props) {
+        const { config } = props;
+        const c = readConfObject(config, 'color');
         return drawLine(ctx, {
             ...props,
             offset: YSCALEBAR_LABEL_OFFSET,
-            colorCallback: () => 'grey',
+            colorCallback: c === '#f0f'
+                ? () => 'grey'
+                : (feature) => readConfObject(config, 'color', { feature }),
         });
     }
 }

package/esm/LinearWiggleDisplay/components/SetColorDialog.js

@@ -8,8 +8,8 @@ const SetColorDialog = observer(function SetColorDialog({ model, handleClose, })
     return (React.createElement(Dialog, { open: true, onClose: handleClose, title: "Set color" },
         React.createElement(DialogContent, null,
             React.createElement(Typography, null, "Select either an overall color, or the positive/negative colors. Note that density renderers only work properly with positive/negative colors"),
-            React.createElement(FormControlLabel, { checked: !posneg, onClick: () => setPosNeg(false), control: React.createElement(Radio, null), label: 'Overall color' }),
-            React.createElement(FormControlLabel, { checked: posneg, onClick: () => setPosNeg(true), control: React.createElement(Radio, null), label: 'Positive/negative color' }),
+            React.createElement(FormControlLabel, { checked: !posneg, onClick: () => setPosNeg(false), control: React.createElement(Radio, null), label: "Overall color" }),
+            React.createElement(FormControlLabel, { checked: posneg, onClick: () => setPosNeg(true), control: React.createElement(Radio, null), label: "Positive/negative color" }),
             posneg ? (React.createElement(React.Fragment, null,
                 React.createElement(Typography, null, "Positive color"),
                 React.createElement(ColorPicker, { color: model.posColor || 'black', onChange: event => {

package/esm/LinearWiggleDisplay/models/configSchema.d.ts

@@ -69,7 +69,9 @@ export default function WiggleConfigFactory(pluginManager: PluginManager): impor
         type: string;
         defaultValue: number;
         description: string;
-    };
+    }; /**
+     * #slot
+     */
     height: {
         type: string;
         defaultValue: number;
@@ -81,4 +83,9 @@ export default function WiggleConfigFactory(pluginManager: PluginManager): impor
         defaultValue: string;
         contextVariable: string[];
     };
+    jexlFilters: {
+        type: string;
+        description: string;
+        defaultValue: never[];
+    };
 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;

package/esm/LinearWiggleDisplay/models/model.d.ts

@@ -95,6 +95,11 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
             defaultValue: string;
             contextVariable: string[];
         };
+        jexlFilters: {
+            type: string;
+            description: string;
+            defaultValue: never[];
+        };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 } & {
     selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -235,6 +240,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
     deleteBlock(key: string): void;
     selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+    navToFeature(feature: import("@jbrowse/core/util").Feature): void;
     clearFeatureSelection(): void;
     setFeatureIdUnderMouse(feature?: string | undefined): void;
     setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;

package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts

@@ -78,11 +78,18 @@ export default function WiggleConfigFactory(pluginManager: PluginManager): impor
         type: string;
         defaultValue: number;
         description: string;
-    };
+    }; /**
+     * #slot
+     */
     mouseover: {
         type: string;
         description: string;
         defaultValue: string;
         contextVariable: string[];
     };
+    jexlFilters: {
+        type: string;
+        description: string;
+        defaultValue: never[];
+    };
 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;

package/esm/MultiLinearWiggleDisplay/models/model.d.ts

@@ -101,7 +101,14 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
             defaultValue: string;
             contextVariable: string[];
         };
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
+        jexlFilters: {
+            type: string;
+            description: string;
+            defaultValue: never[];
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>; /**
+     * #action
+     */
 } & {
     selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
@@ -249,6 +256,7 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
     addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
     deleteBlock(key: string): void;
     selectFeature(feature: Feature): void;
+    navToFeature(feature: Feature): void;
     clearFeatureSelection(): void;
     setFeatureIdUnderMouse(feature?: string | undefined): void;
     setContextMenuFeature(feature?: Feature | undefined): void;

package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts

@@ -16,5 +16,5 @@ export declare class WiggleGetMultiRegionQuantitativeStats extends RpcMethodType
         headers?: Record<string, string>;
         regions: Region[];
         bpPerPx: number;
-    }, rpcDriverClassName: string): Promise<import("@jbrowse/core/util/stats").QuantitativeStats>;
+    }, rpcDriverClassName: string): Promise<any>;
 }

package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js

@@ -2,7 +2,6 @@ import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
 import SerializableFilterChain from '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain';
 import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
 import { renameRegionsIfNeeded } from '@jbrowse/core/util';
-import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
 export class WiggleGetMultiRegionQuantitativeStats extends RpcMethodType {
     constructor() {
         super(...arguments);
@@ -38,9 +37,7 @@ export class WiggleGetMultiRegionQuantitativeStats extends RpcMethodType {
         const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
         const { regions, adapterConfig, sessionId } = deserializedArgs;
         const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
-        if (dataAdapter instanceof BaseFeatureDataAdapter) {
-            return dataAdapter.getMultiRegionQuantitativeStats(regions, deserializedArgs);
-        }
-        throw new Error('Data adapter not found');
+        // @ts-expect-error
+        return dataAdapter.getMultiRegionQuantitativeStats(regions, deserializedArgs);
     }
 }

package/esm/index.d.ts

@@ -148,6 +148,11 @@ export default class WigglePlugin extends Plugin {
                         defaultValue: string;
                         contextVariable: string[];
                     };
+                    jexlFilters: {
+                        type: string;
+                        description: string;
+                        defaultValue: never[];
+                    };
                 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">> & import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
                 selectedRendering: string;
                 resolution: number;
@@ -280,6 +285,7 @@ export default class WigglePlugin extends Plugin {
                 addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
                 deleteBlock(key: string): void;
                 selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+                navToFeature(feature: import("@jbrowse/core/util").Feature): void;
                 clearFeatureSelection(): void;
                 setFeatureIdUnderMouse(feature?: string | undefined): void;
                 setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
@@ -525,6 +531,11 @@ export default class WigglePlugin extends Plugin {
                         defaultValue: string;
                         contextVariable: string[];
                     };
+                    jexlFilters: {
+                        type: string;
+                        description: string;
+                        defaultValue: never[];
+                    };
                 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
             } & {
                 selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -658,6 +669,7 @@ export default class WigglePlugin extends Plugin {
                 addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
                 deleteBlock(key: string): void;
                 selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+                navToFeature(feature: import("@jbrowse/core/util").Feature): void;
                 clearFeatureSelection(): void;
                 setFeatureIdUnderMouse(feature?: string | undefined): void;
                 setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;

package/esm/shared/configShared.d.ts

@@ -71,7 +71,9 @@ export default function sharedWiggleConfigFactory(): import("@jbrowse/core/confi
     fetchSizeLimit: {
         type: string;
         defaultValue: number;
-        description: string;
+        description: string; /**
+         * #slot
+         */
     };
     height: {
         type: string;
@@ -84,4 +86,9 @@ export default function sharedWiggleConfigFactory(): import("@jbrowse/core/confi
         defaultValue: string;
         contextVariable: string[];
     };
+    jexlFilters: {
+        type: string;
+        description: string;
+        defaultValue: never[];
+    };
 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>;

package/esm/shared/modelShared.d.ts

@@ -76,7 +76,9 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
         fetchSizeLimit: {
             type: string;
             defaultValue: number;
-            description: string;
+            description: string; /**
+             * #property
+             */
         };
         height: {
             type: string;
@@ -89,6 +91,11 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
             defaultValue: string;
             contextVariable: string[];
         };
+        jexlFilters: {
+            type: string;
+            description: string;
+            defaultValue: never[];
+        };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 } & {
     /**
@@ -268,13 +275,15 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
     readonly featureUnderMouse: Feature | undefined;
     getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
     getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
+    /**
+     * #action
+     */
     searchFeatureByID(id: string): [number, number, number, number] | undefined;
 } & {
     addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
     deleteBlock(key: string): void;
-    selectFeature(feature: Feature): void; /**
-     * #getter
-     */
+    selectFeature(feature: Feature): void;
+    navToFeature(feature: Feature): void;
     clearFeatureSelection(): void;
     setFeatureIdUnderMouse(feature?: string | undefined): void;
     setContextMenuFeature(feature?: Feature | undefined): void;
@@ -283,12 +292,11 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
 } & {
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-    renderProps(): any; /**
-     * #getter
-     */
+    renderProps(): any;
 } & {
-    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>; /**
-     * #getter
+    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
+    /**
+     * #method
      */
     afterAttach(): void;
 } & {
@@ -563,7 +571,9 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
         fetchSizeLimit: {
             type: string;
             defaultValue: number;
-            description: string;
+            description: string; /**
+             * #property
+             */
         };
         height: {
             type: string;
@@ -576,6 +586,11 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
             defaultValue: string;
             contextVariable: string[];
         };
+        jexlFilters: {
+            type: string;
+            description: string;
+            defaultValue: never[];
+        };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 }>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
     type: string;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-wiggle",
-  "version": "2.11.1",
+  "version": "2.11.2",
   "description": "JBrowse 2 wiggle adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
@@ -39,6 +39,7 @@
     "@floating-ui/react": "^0.26.3",
     "@gmod/bbi": "^4.0.0",
     "@mui/icons-material": "^5.0.2",
+    "@mui/x-data-grid": "^7.0.0",
     "clone": "^2.1.2",
     "d3-color": "^3.0.2",
     "d3-scale": "^3.0.2",
@@ -52,7 +53,6 @@
     "@jbrowse/plugin-data-management": "^2.0.0",
     "@jbrowse/plugin-linear-genome-view": "^2.0.0",
     "@mui/material": "^5.0.0",
-    "@mui/x-data-grid": "^7.0.0",
     "mobx": "^6.0.0",
     "mobx-react": "^9.0.0",
     "mobx-state-tree": "^5.0.0",
@@ -66,5 +66,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "11b28d66d782eb06f92ccb993108bb6c3c82819e"
+  "gitHead": "511048cb6965f0bf624c96de244e7fd47fce17d6"
 }