@jbrowse/plugin-wiggle 2.11.0 → 2.11.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (77) hide show
  1. package/dist/BigWigAdapter/index.d.ts +1 -2
  2. package/dist/BigWigAdapter/index.js +3 -2
  3. package/dist/CreateMultiWiggleExtension/index.d.ts +1 -1
  4. package/dist/CreateMultiWiggleExtension/index.js +2 -2
  5. package/dist/DensityRenderer/index.d.ts +1 -2
  6. package/dist/DensityRenderer/index.js +3 -2
  7. package/dist/LinePlotRenderer/index.d.ts +1 -2
  8. package/dist/LinePlotRenderer/index.js +3 -2
  9. package/dist/LinearWiggleDisplay/index.d.ts +1 -2
  10. package/dist/LinearWiggleDisplay/index.js +3 -2
  11. package/dist/MultiDensityRenderer/index.d.ts +1 -2
  12. package/dist/MultiDensityRenderer/index.js +3 -2
  13. package/dist/MultiLineRenderer/index.d.ts +1 -2
  14. package/dist/MultiLineRenderer/index.js +3 -2
  15. package/dist/MultiLinearWiggleDisplay/components/RectBg.js +2 -1
  16. package/dist/MultiLinearWiggleDisplay/index.d.ts +1 -2
  17. package/dist/MultiLinearWiggleDisplay/index.js +3 -2
  18. package/dist/MultiQuantitativeTrack/index.d.ts +1 -2
  19. package/dist/MultiQuantitativeTrack/index.js +3 -2
  20. package/dist/MultiRowLineRenderer/index.d.ts +1 -2
  21. package/dist/MultiRowLineRenderer/index.js +3 -2
  22. package/dist/MultiRowXYPlotRenderer/index.d.ts +1 -2
  23. package/dist/MultiRowXYPlotRenderer/index.js +3 -2
  24. package/dist/MultiWiggleAdapter/index.d.ts +1 -2
  25. package/dist/MultiWiggleAdapter/index.js +3 -2
  26. package/dist/MultiWiggleAddTrackWorkflow/index.d.ts +2 -0
  27. package/dist/{MultiWiggleAddTrackWidget → MultiWiggleAddTrackWorkflow}/index.js +3 -2
  28. package/dist/MultiXYPlotRenderer/index.d.ts +1 -2
  29. package/dist/MultiXYPlotRenderer/index.js +3 -2
  30. package/dist/QuantitativeTrack/index.d.ts +1 -2
  31. package/dist/QuantitativeTrack/index.js +3 -2
  32. package/dist/Tooltip.js +1 -0
  33. package/dist/XYPlotRenderer/index.d.ts +1 -2
  34. package/dist/XYPlotRenderer/index.js +3 -2
  35. package/dist/index.js +2 -2
  36. package/esm/BigWigAdapter/index.d.ts +1 -2
  37. package/esm/BigWigAdapter/index.js +2 -2
  38. package/esm/CreateMultiWiggleExtension/index.d.ts +1 -1
  39. package/esm/CreateMultiWiggleExtension/index.js +1 -1
  40. package/esm/DensityRenderer/index.d.ts +1 -2
  41. package/esm/DensityRenderer/index.js +2 -2
  42. package/esm/LinePlotRenderer/index.d.ts +1 -2
  43. package/esm/LinePlotRenderer/index.js +2 -2
  44. package/esm/LinearWiggleDisplay/index.d.ts +1 -2
  45. package/esm/LinearWiggleDisplay/index.js +2 -2
  46. package/esm/MultiDensityRenderer/index.d.ts +1 -2
  47. package/esm/MultiDensityRenderer/index.js +2 -2
  48. package/esm/MultiLineRenderer/index.d.ts +1 -2
  49. package/esm/MultiLineRenderer/index.js +2 -2
  50. package/esm/MultiLinearWiggleDisplay/components/RectBg.js +2 -1
  51. package/esm/MultiLinearWiggleDisplay/index.d.ts +1 -2
  52. package/esm/MultiLinearWiggleDisplay/index.js +2 -2
  53. package/esm/MultiQuantitativeTrack/index.d.ts +1 -2
  54. package/esm/MultiQuantitativeTrack/index.js +2 -2
  55. package/esm/MultiRowLineRenderer/index.d.ts +1 -2
  56. package/esm/MultiRowLineRenderer/index.js +2 -2
  57. package/esm/MultiRowXYPlotRenderer/index.d.ts +1 -2
  58. package/esm/MultiRowXYPlotRenderer/index.js +2 -2
  59. package/esm/MultiWiggleAdapter/index.d.ts +1 -2
  60. package/esm/MultiWiggleAdapter/index.js +2 -2
  61. package/esm/MultiWiggleAddTrackWorkflow/index.d.ts +2 -0
  62. package/esm/{MultiWiggleAddTrackWidget → MultiWiggleAddTrackWorkflow}/index.js +2 -2
  63. package/esm/MultiXYPlotRenderer/index.d.ts +1 -2
  64. package/esm/MultiXYPlotRenderer/index.js +2 -2
  65. package/esm/QuantitativeTrack/index.d.ts +1 -2
  66. package/esm/QuantitativeTrack/index.js +2 -2
  67. package/esm/Tooltip.js +1 -0
  68. package/esm/XYPlotRenderer/index.d.ts +1 -2
  69. package/esm/XYPlotRenderer/index.js +2 -2
  70. package/esm/index.js +2 -2
  71. package/package.json +2 -2
  72. package/dist/MultiWiggleAddTrackWidget/index.d.ts +0 -3
  73. package/esm/MultiWiggleAddTrackWidget/index.d.ts +0 -3
  74. /package/dist/{MultiWiggleAddTrackWidget → MultiWiggleAddTrackWorkflow}/AddTrackWorkflow.d.ts +0 -0
  75. /package/dist/{MultiWiggleAddTrackWidget → MultiWiggleAddTrackWorkflow}/AddTrackWorkflow.js +0 -0
  76. /package/esm/{MultiWiggleAddTrackWidget → MultiWiggleAddTrackWorkflow}/AddTrackWorkflow.d.ts +0 -0
  77. /package/esm/{MultiWiggleAddTrackWidget → MultiWiggleAddTrackWorkflow}/AddTrackWorkflow.js +0 -0
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function BigWigAdapterF(pluginManager: PluginManager): void;
@@ -28,7 +28,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
28
28
  Object.defineProperty(exports, "__esModule", { value: true });
29
29
  const AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
30
30
  const configSchema_1 = __importDefault(require("./configSchema"));
31
- exports.default = (pluginManager) => {
31
+ function BigWigAdapterF(pluginManager) {
32
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  pluginManager.addAdapterType(() => new AdapterType_1.default({
33
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  name: 'BigWigAdapter',
34
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  displayName: 'BigWig adapter',
@@ -40,4 +40,5 @@ exports.default = (pluginManager) => {
40
40
  ],
41
41
  getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./BigWigAdapter'))).then(r => r.default),
42
42
  }));
43
- };
43
+ }
44
+ exports.default = BigWigAdapterF;
@@ -1,2 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- export default function (pm: PluginManager): void;
2
+ export default function CreateMultiWiggleExtensionF(pm: PluginManager): void;
@@ -27,7 +27,7 @@ const react_1 = require("react");
27
27
  const configuration_1 = require("@jbrowse/core/configuration");
28
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  const util_1 = require("@jbrowse/core/util");
29
29
  const ConfirmDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./ConfirmDialog'))));
30
- function default_1(pm) {
30
+ function CreateMultiWiggleExtensionF(pm) {
31
31
  pm.addToExtensionPoint('TrackSelector-multiTrackMenuItems', (items, props) => {
32
32
  const { session } = props;
33
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  return [
@@ -82,4 +82,4 @@ function default_1(pm) {
82
82
  ];
83
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  });
84
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  }
85
- exports.default = default_1;
85
+ exports.default = CreateMultiWiggleExtensionF;
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function DensityRendererF(pluginManager: PluginManager): void;
@@ -6,11 +6,12 @@ Object.defineProperty(exports, "__esModule", { value: true });
6
6
  const configSchema_1 = __importDefault(require("./configSchema"));
7
7
  const DensityRenderer_1 = __importDefault(require("./DensityRenderer"));
8
8
  const WiggleRendering_1 = __importDefault(require("../WiggleRendering"));
9
- exports.default = (pluginManager) => {
9
+ function DensityRendererF(pluginManager) {
10
10
  pluginManager.addRendererType(() => new DensityRenderer_1.default({
11
11
  name: 'DensityRenderer',
12
12
  ReactComponent: WiggleRendering_1.default,
13
13
  configSchema: configSchema_1.default,
14
14
  pluginManager,
15
15
  }));
16
- };
16
+ }
17
+ exports.default = DensityRendererF;
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function LinePlotRendererF(pluginManager: PluginManager): void;
@@ -6,11 +6,12 @@ Object.defineProperty(exports, "__esModule", { value: true });
6
6
  const configSchema_1 = __importDefault(require("./configSchema"));
7
7
  const WiggleRendering_1 = __importDefault(require("../WiggleRendering"));
8
8
  const LinePlotRenderer_1 = __importDefault(require("./LinePlotRenderer"));
9
- exports.default = (pluginManager) => {
9
+ function LinePlotRendererF(pluginManager) {
10
10
  pluginManager.addRendererType(() => new LinePlotRenderer_1.default({
11
11
  name: 'LinePlotRenderer',
12
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  ReactComponent: WiggleRendering_1.default,
13
13
  configSchema: configSchema_1.default,
14
14
  pluginManager,
15
15
  }));
16
- };
16
+ }
17
+ exports.default = LinePlotRendererF;
@@ -1,6 +1,5 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function LinearWiggleDisplayF(pluginManager: PluginManager): void;
4
3
  export { default as Tooltip } from './components/Tooltip';
5
4
  export { default as ReactComponent } from './components/WiggleDisplayComponent';
6
5
  export { default as modelFactory } from './models/model';
@@ -31,7 +31,7 @@ const DisplayType_1 = __importDefault(require("@jbrowse/core/pluggableElementTyp
31
31
  const configSchema_1 = __importDefault(require("./models/configSchema"));
32
32
  const model_1 = __importDefault(require("./models/model"));
33
33
  const react_1 = require("react");
34
- exports.default = (pluginManager) => {
34
+ function LinearWiggleDisplayF(pluginManager) {
35
35
  pluginManager.addDisplayType(() => {
36
36
  const configSchema = (0, configSchema_1.default)(pluginManager);
37
37
  const stateModel = (0, model_1.default)(pluginManager, configSchema);
@@ -45,7 +45,8 @@ exports.default = (pluginManager) => {
45
45
  ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/WiggleDisplayComponent')))),
46
46
  });
47
47
  });
48
- };
48
+ }
49
+ exports.default = LinearWiggleDisplayF;
49
50
  var Tooltip_1 = require("./components/Tooltip");
50
51
  Object.defineProperty(exports, "Tooltip", { enumerable: true, get: function () { return __importDefault(Tooltip_1).default; } });
51
52
  var WiggleDisplayComponent_1 = require("./components/WiggleDisplayComponent");
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiDensityRendererF(pluginManager: PluginManager): void;
@@ -6,11 +6,12 @@ Object.defineProperty(exports, "__esModule", { value: true });
6
6
  const configSchema_1 = __importDefault(require("./configSchema"));
7
7
  const MultiWiggleRendering_1 = __importDefault(require("../MultiWiggleRendering"));
8
8
  const MultiDensityRenderer_1 = __importDefault(require("./MultiDensityRenderer"));
9
- exports.default = (pluginManager) => {
9
+ function MultiDensityRendererF(pluginManager) {
10
10
  pluginManager.addRendererType(() => new MultiDensityRenderer_1.default({
11
11
  name: 'MultiDensityRenderer',
12
12
  ReactComponent: MultiWiggleRendering_1.default,
13
13
  configSchema: configSchema_1.default,
14
14
  pluginManager,
15
15
  }));
16
- };
16
+ }
17
+ exports.default = MultiDensityRendererF;
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiLineRendererF(pluginManager: PluginManager): void;
@@ -6,11 +6,12 @@ Object.defineProperty(exports, "__esModule", { value: true });
6
6
  const MultiWiggleRendering_1 = __importDefault(require("../MultiWiggleRendering"));
7
7
  const MultiLineRenderer_1 = __importDefault(require("./MultiLineRenderer"));
8
8
  const configSchema_1 = __importDefault(require("./configSchema"));
9
- exports.default = (pluginManager) => {
9
+ function MultiLineRendererF(pluginManager) {
10
10
  pluginManager.addRendererType(() => new MultiLineRenderer_1.default({
11
11
  name: 'MultiLineRenderer',
12
12
  ReactComponent: MultiWiggleRendering_1.default,
13
13
  configSchema: configSchema_1.default,
14
14
  pluginManager,
15
15
  }));
16
- };
16
+ }
17
+ exports.default = MultiLineRendererF;
@@ -3,9 +3,10 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
+ const util_1 = require("@jbrowse/core/util");
6
7
  const react_1 = __importDefault(require("react"));
7
8
  const RectBg = (props) => {
8
9
  const { color = 'rgb(255,255,255,0.8)' } = props;
9
- return react_1.default.createElement("rect", { ...props, fill: color });
10
+ return react_1.default.createElement("rect", { ...props, ...(0, util_1.getFillProps)(color) });
10
11
  };
11
12
  exports.default = RectBg;
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiLinearWiggleDisplayF(pluginManager: PluginManager): void;
@@ -30,7 +30,7 @@ const DisplayType_1 = __importDefault(require("@jbrowse/core/pluggableElementTyp
30
30
  const configSchema_1 = __importDefault(require("./models/configSchema"));
31
31
  const model_1 = __importDefault(require("./models/model"));
32
32
  const react_1 = require("react");
33
- exports.default = (pluginManager) => {
33
+ function MultiLinearWiggleDisplayF(pluginManager) {
34
34
  pluginManager.addDisplayType(() => {
35
35
  const configSchema = (0, configSchema_1.default)(pluginManager);
36
36
  return new DisplayType_1.default({
@@ -43,4 +43,5 @@ exports.default = (pluginManager) => {
43
43
  ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/WiggleDisplayComponent')))),
44
44
  });
45
45
  });
46
- };
46
+ }
47
+ exports.default = MultiLinearWiggleDisplayF;
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiQuantitativeTrackF(pluginManager: PluginManager): void;
@@ -6,7 +6,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
6
6
  const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
7
7
  const TrackType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/TrackType"));
8
8
  const configSchema_1 = __importDefault(require("./configSchema"));
9
- exports.default = (pluginManager) => {
9
+ function MultiQuantitativeTrackF(pluginManager) {
10
10
  pluginManager.addTrackType(() => {
11
11
  const configSchema = (0, configSchema_1.default)(pluginManager);
12
12
  return new TrackType_1.default({
@@ -16,4 +16,5 @@ exports.default = (pluginManager) => {
16
16
  stateModel: (0, models_1.createBaseTrackModel)(pluginManager, 'MultiQuantitativeTrack', configSchema),
17
17
  });
18
18
  });
19
- };
19
+ }
20
+ exports.default = MultiQuantitativeTrackF;
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiRowLineRendererF(pluginManager: PluginManager): void;
@@ -6,11 +6,12 @@ Object.defineProperty(exports, "__esModule", { value: true });
6
6
  const MultiWiggleRendering_1 = __importDefault(require("../MultiWiggleRendering"));
7
7
  const MultiRowLineRenderer_1 = __importDefault(require("./MultiRowLineRenderer"));
8
8
  const configSchema_1 = __importDefault(require("./configSchema"));
9
- exports.default = (pluginManager) => {
9
+ function MultiRowLineRendererF(pluginManager) {
10
10
  pluginManager.addRendererType(() => new MultiRowLineRenderer_1.default({
11
11
  name: 'MultiRowLineRenderer',
12
12
  ReactComponent: MultiWiggleRendering_1.default,
13
13
  configSchema: configSchema_1.default,
14
14
  pluginManager,
15
15
  }));
16
- };
16
+ }
17
+ exports.default = MultiRowLineRendererF;
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiRowXYPlotRendererF(pluginManager: PluginManager): void;
@@ -6,11 +6,12 @@ Object.defineProperty(exports, "__esModule", { value: true });
6
6
  const MultiWiggleRendering_1 = __importDefault(require("../MultiWiggleRendering"));
7
7
  const MultiRowXYPlotRenderer_1 = __importDefault(require("./MultiRowXYPlotRenderer"));
8
8
  const configSchema_1 = __importDefault(require("./configSchema"));
9
- exports.default = (pluginManager) => {
9
+ function MultiRowXYPlotRendererF(pluginManager) {
10
10
  pluginManager.addRendererType(() => new MultiRowXYPlotRenderer_1.default({
11
11
  name: 'MultiRowXYPlotRenderer',
12
12
  ReactComponent: MultiWiggleRendering_1.default,
13
13
  configSchema: configSchema_1.default,
14
14
  pluginManager,
15
15
  }));
16
- };
16
+ }
17
+ exports.default = MultiRowXYPlotRendererF;
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiWiggleAdapterF(pluginManager: PluginManager): void;
@@ -28,7 +28,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
28
28
  Object.defineProperty(exports, "__esModule", { value: true });
29
29
  const configSchema_1 = __importDefault(require("./configSchema"));
30
30
  const AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
31
- exports.default = (pluginManager) => {
31
+ function MultiWiggleAdapterF(pluginManager) {
32
32
  pluginManager.addAdapterType(() => new AdapterType_1.default({
33
33
  name: 'MultiWiggleAdapter',
34
34
  displayName: 'Multi-wiggle adapter',
@@ -43,4 +43,5 @@ exports.default = (pluginManager) => {
43
43
  },
44
44
  getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./MultiWiggleAdapter'))).then(r => r.default),
45
45
  }));
46
- };
46
+ }
47
+ exports.default = MultiWiggleAdapterF;
@@ -0,0 +1,2 @@
1
+ import PluginManager from '@jbrowse/core/PluginManager';
2
+ export default function MultiWiggleAddTrackWorkflowF(pm: PluginManager): void;
@@ -27,10 +27,11 @@ const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
27
27
  const mobx_state_tree_1 = require("mobx-state-tree");
28
28
  // locals
29
29
  const react_1 = require("react");
30
- exports.default = (pm) => {
30
+ function MultiWiggleAddTrackWorkflowF(pm) {
31
31
  pm.addAddTrackWorkflowType(() => new pluggableElementTypes_1.AddTrackWorkflowType({
32
32
  name: 'Multi-wiggle track',
33
33
  ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./AddTrackWorkflow')))),
34
34
  stateModel: mobx_state_tree_1.types.model({}),
35
35
  }));
36
- };
36
+ }
37
+ exports.default = MultiWiggleAddTrackWorkflowF;
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiXYPlotRendererF(pluginManager: PluginManager): void;
@@ -6,11 +6,12 @@ Object.defineProperty(exports, "__esModule", { value: true });
6
6
  const MultiWiggleRendering_1 = __importDefault(require("../MultiWiggleRendering"));
7
7
  const MultiXYPlotRenderer_1 = __importDefault(require("./MultiXYPlotRenderer"));
8
8
  const configSchema_1 = __importDefault(require("./configSchema"));
9
- exports.default = (pluginManager) => {
9
+ function MultiXYPlotRendererF(pluginManager) {
10
10
  pluginManager.addRendererType(() => new MultiXYPlotRenderer_1.default({
11
11
  name: 'MultiXYPlotRenderer',
12
12
  ReactComponent: MultiWiggleRendering_1.default,
13
13
  configSchema: configSchema_1.default,
14
14
  pluginManager,
15
15
  }));
16
- };
16
+ }
17
+ exports.default = MultiXYPlotRendererF;
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function QuantitativeTrackF(pluginManager: PluginManager): void;
@@ -6,7 +6,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
6
6
  const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
7
7
  const TrackType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/TrackType"));
8
8
  const configSchema_1 = __importDefault(require("./configSchema"));
9
- exports.default = (pluginManager) => {
9
+ function QuantitativeTrackF(pluginManager) {
10
10
  pluginManager.addTrackType(() => {
11
11
  const configSchema = (0, configSchema_1.default)(pluginManager);
12
12
  return new TrackType_1.default({
@@ -16,4 +16,5 @@ exports.default = (pluginManager) => {
16
16
  stateModel: (0, models_1.createBaseTrackModel)(pluginManager, 'QuantitativeTrack', configSchema),
17
17
  });
18
18
  });
19
- };
19
+ }
20
+ exports.default = QuantitativeTrackF;
package/dist/Tooltip.js CHANGED
@@ -44,6 +44,7 @@ const Tooltip = (0, mobx_react_1.observer)(function Tooltip({ model, height, cli
44
44
  const { classes } = useStyles();
45
45
  const { refs, floatingStyles, context } = (0, react_2.useFloating)({
46
46
  placement: 'right',
47
+ strategy: 'fixed',
47
48
  });
48
49
  const x = clientMouseCoord[0] + 5;
49
50
  const y = useClientY ? clientMouseCoord[1] : (clientRect === null || clientRect === void 0 ? void 0 : clientRect.top) || 0;
@@ -1,6 +1,5 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function XYPlotRendererF(pluginManager: PluginManager): void;
4
3
  export { default as XYPlotRenderer } from './XYPlotRenderer';
5
4
  export { default as ReactComponent } from '../WiggleRendering';
6
5
  export { default as configSchema } from './configSchema';
@@ -7,14 +7,15 @@ exports.configSchema = exports.ReactComponent = exports.XYPlotRenderer = void 0;
7
7
  const WiggleRendering_1 = __importDefault(require("../WiggleRendering"));
8
8
  const XYPlotRenderer_1 = __importDefault(require("./XYPlotRenderer"));
9
9
  const configSchema_1 = __importDefault(require("./configSchema"));
10
- exports.default = (pluginManager) => {
10
+ function XYPlotRendererF(pluginManager) {
11
11
  pluginManager.addRendererType(() => new XYPlotRenderer_1.default({
12
12
  name: 'XYPlotRenderer',
13
13
  ReactComponent: WiggleRendering_1.default,
14
14
  configSchema: configSchema_1.default,
15
15
  pluginManager,
16
16
  }));
17
- };
17
+ }
18
+ exports.default = XYPlotRendererF;
18
19
  var XYPlotRenderer_2 = require("./XYPlotRenderer");
19
20
  Object.defineProperty(exports, "XYPlotRenderer", { enumerable: true, get: function () { return __importDefault(XYPlotRenderer_2).default; } });
20
21
  var WiggleRendering_2 = require("../WiggleRendering");
package/dist/index.js CHANGED
@@ -49,7 +49,7 @@ const MultiDensityRenderer_1 = __importDefault(require("./MultiDensityRenderer")
49
49
  const MultiLineRenderer_1 = __importDefault(require("./MultiLineRenderer"));
50
50
  const MultiRowLineRenderer_1 = __importDefault(require("./MultiRowLineRenderer"));
51
51
  const CreateMultiWiggleExtension_1 = __importDefault(require("./CreateMultiWiggleExtension"));
52
- const MultiWiggleAddTrackWidget_1 = __importDefault(require("./MultiWiggleAddTrackWidget"));
52
+ const MultiWiggleAddTrackWorkflow_1 = __importDefault(require("./MultiWiggleAddTrackWorkflow"));
53
53
  const utils = __importStar(require("./util"));
54
54
  const rpcMethods_1 = require("./WiggleRPC/rpcMethods");
55
55
  const LinearWiggleDisplay_2 = require("./LinearWiggleDisplay");
@@ -83,7 +83,7 @@ class WigglePlugin extends Plugin_1.default {
83
83
  (0, MultiDensityRenderer_1.default)(pm);
84
84
  (0, MultiLineRenderer_1.default)(pm);
85
85
  (0, MultiRowLineRenderer_1.default)(pm);
86
- (0, MultiWiggleAddTrackWidget_1.default)(pm);
86
+ (0, MultiWiggleAddTrackWorkflow_1.default)(pm);
87
87
  (0, CreateMultiWiggleExtension_1.default)(pm);
88
88
  pm.addToExtensionPoint('Core-guessAdapterForLocation', (cb) => {
89
89
  return (file, index, hint) => {
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function BigWigAdapterF(pluginManager: PluginManager): void;
@@ -1,6 +1,6 @@
1
1
  import AdapterType from '@jbrowse/core/pluggableElementTypes/AdapterType';
2
2
  import configSchema from './configSchema';
3
- export default (pluginManager) => {
3
+ export default function BigWigAdapterF(pluginManager) {
4
4
  pluginManager.addAdapterType(() => new AdapterType({
5
5
  name: 'BigWigAdapter',
6
6
  displayName: 'BigWig adapter',
@@ -12,4 +12,4 @@ export default (pluginManager) => {
12
12
  ],
13
13
  getAdapterClass: () => import('./BigWigAdapter').then(r => r.default),
14
14
  }));
15
- };
15
+ }
@@ -1,2 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- export default function (pm: PluginManager): void;
2
+ export default function CreateMultiWiggleExtensionF(pm: PluginManager): void;
@@ -2,7 +2,7 @@ import { lazy } from 'react';
2
2
  import { readConfObject } from '@jbrowse/core/configuration';
3
3
  import { getSession, isSessionWithAddTracks } from '@jbrowse/core/util';
4
4
  const ConfirmDialog = lazy(() => import('./ConfirmDialog'));
5
- export default function (pm) {
5
+ export default function CreateMultiWiggleExtensionF(pm) {
6
6
  pm.addToExtensionPoint('TrackSelector-multiTrackMenuItems', (items, props) => {
7
7
  const { session } = props;
8
8
  return [
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function DensityRendererF(pluginManager: PluginManager): void;
@@ -1,11 +1,11 @@
1
1
  import configSchema from './configSchema';
2
2
  import DensityRenderer from './DensityRenderer';
3
3
  import ReactComponent from '../WiggleRendering';
4
- export default (pluginManager) => {
4
+ export default function DensityRendererF(pluginManager) {
5
5
  pluginManager.addRendererType(() => new DensityRenderer({
6
6
  name: 'DensityRenderer',
7
7
  ReactComponent,
8
8
  configSchema,
9
9
  pluginManager,
10
10
  }));
11
- };
11
+ }
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function LinePlotRendererF(pluginManager: PluginManager): void;
@@ -1,11 +1,11 @@
1
1
  import configSchema from './configSchema';
2
2
  import ReactComponent from '../WiggleRendering';
3
3
  import LinePlotRenderer from './LinePlotRenderer';
4
- export default (pluginManager) => {
4
+ export default function LinePlotRendererF(pluginManager) {
5
5
  pluginManager.addRendererType(() => new LinePlotRenderer({
6
6
  name: 'LinePlotRenderer',
7
7
  ReactComponent,
8
8
  configSchema,
9
9
  pluginManager,
10
10
  }));
11
- };
11
+ }
@@ -1,6 +1,5 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function LinearWiggleDisplayF(pluginManager: PluginManager): void;
4
3
  export { default as Tooltip } from './components/Tooltip';
5
4
  export { default as ReactComponent } from './components/WiggleDisplayComponent';
6
5
  export { default as modelFactory } from './models/model';
@@ -2,7 +2,7 @@ import DisplayType from '@jbrowse/core/pluggableElementTypes/DisplayType';
2
2
  import configSchemaFactory from './models/configSchema';
3
3
  import modelFactory from './models/model';
4
4
  import { lazy } from 'react';
5
- export default (pluginManager) => {
5
+ export default function LinearWiggleDisplayF(pluginManager) {
6
6
  pluginManager.addDisplayType(() => {
7
7
  const configSchema = configSchemaFactory(pluginManager);
8
8
  const stateModel = modelFactory(pluginManager, configSchema);
@@ -16,7 +16,7 @@ export default (pluginManager) => {
16
16
  ReactComponent: lazy(() => import('./components/WiggleDisplayComponent')),
17
17
  });
18
18
  });
19
- };
19
+ }
20
20
  export { default as Tooltip } from './components/Tooltip';
21
21
  export { default as ReactComponent } from './components/WiggleDisplayComponent';
22
22
  export { default as modelFactory } from './models/model';
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiDensityRendererF(pluginManager: PluginManager): void;
@@ -1,11 +1,11 @@
1
1
  import configSchema from './configSchema';
2
2
  import ReactComponent from '../MultiWiggleRendering';
3
3
  import MultiDensityRenderer from './MultiDensityRenderer';
4
- export default (pluginManager) => {
4
+ export default function MultiDensityRendererF(pluginManager) {
5
5
  pluginManager.addRendererType(() => new MultiDensityRenderer({
6
6
  name: 'MultiDensityRenderer',
7
7
  ReactComponent,
8
8
  configSchema,
9
9
  pluginManager,
10
10
  }));
11
- };
11
+ }
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiLineRendererF(pluginManager: PluginManager): void;
@@ -1,11 +1,11 @@
1
1
  import ReactComponent from '../MultiWiggleRendering';
2
2
  import MultiLineRenderer from './MultiLineRenderer';
3
3
  import configSchema from './configSchema';
4
- export default (pluginManager) => {
4
+ export default function MultiLineRendererF(pluginManager) {
5
5
  pluginManager.addRendererType(() => new MultiLineRenderer({
6
6
  name: 'MultiLineRenderer',
7
7
  ReactComponent,
8
8
  configSchema,
9
9
  pluginManager,
10
10
  }));
11
- };
11
+ }
@@ -1,6 +1,7 @@
1
+ import { getFillProps } from '@jbrowse/core/util';
1
2
  import React from 'react';
2
3
  const RectBg = (props) => {
3
4
  const { color = 'rgb(255,255,255,0.8)' } = props;
4
- return React.createElement("rect", { ...props, fill: color });
5
+ return React.createElement("rect", { ...props, ...getFillProps(color) });
5
6
  };
6
7
  export default RectBg;
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiLinearWiggleDisplayF(pluginManager: PluginManager): void;
@@ -2,7 +2,7 @@ import DisplayType from '@jbrowse/core/pluggableElementTypes/DisplayType';
2
2
  import configSchemaFactory from './models/configSchema';
3
3
  import modelFactory from './models/model';
4
4
  import { lazy } from 'react';
5
- export default (pluginManager) => {
5
+ export default function MultiLinearWiggleDisplayF(pluginManager) {
6
6
  pluginManager.addDisplayType(() => {
7
7
  const configSchema = configSchemaFactory(pluginManager);
8
8
  return new DisplayType({
@@ -15,4 +15,4 @@ export default (pluginManager) => {
15
15
  ReactComponent: lazy(() => import('./components/WiggleDisplayComponent')),
16
16
  });
17
17
  });
18
- };
18
+ }
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiQuantitativeTrackF(pluginManager: PluginManager): void;
@@ -1,7 +1,7 @@
1
1
  import { createBaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
2
2
  import TrackType from '@jbrowse/core/pluggableElementTypes/TrackType';
3
3
  import configSchemaF from './configSchema';
4
- export default (pluginManager) => {
4
+ export default function MultiQuantitativeTrackF(pluginManager) {
5
5
  pluginManager.addTrackType(() => {
6
6
  const configSchema = configSchemaF(pluginManager);
7
7
  return new TrackType({
@@ -11,4 +11,4 @@ export default (pluginManager) => {
11
11
  stateModel: createBaseTrackModel(pluginManager, 'MultiQuantitativeTrack', configSchema),
12
12
  });
13
13
  });
14
- };
14
+ }
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiRowLineRendererF(pluginManager: PluginManager): void;
@@ -1,11 +1,11 @@
1
1
  import ReactComponent from '../MultiWiggleRendering';
2
2
  import MultiRowLineRenderer from './MultiRowLineRenderer';
3
3
  import configSchema from './configSchema';
4
- export default (pluginManager) => {
4
+ export default function MultiRowLineRendererF(pluginManager) {
5
5
  pluginManager.addRendererType(() => new MultiRowLineRenderer({
6
6
  name: 'MultiRowLineRenderer',
7
7
  ReactComponent,
8
8
  configSchema,
9
9
  pluginManager,
10
10
  }));
11
- };
11
+ }
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiRowXYPlotRendererF(pluginManager: PluginManager): void;
@@ -1,11 +1,11 @@
1
1
  import ReactComponent from '../MultiWiggleRendering';
2
2
  import MultiRowXYPlotRenderer from './MultiRowXYPlotRenderer';
3
3
  import configSchema from './configSchema';
4
- export default (pluginManager) => {
4
+ export default function MultiRowXYPlotRendererF(pluginManager) {
5
5
  pluginManager.addRendererType(() => new MultiRowXYPlotRenderer({
6
6
  name: 'MultiRowXYPlotRenderer',
7
7
  ReactComponent,
8
8
  configSchema,
9
9
  pluginManager,
10
10
  }));
11
- };
11
+ }
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiWiggleAdapterF(pluginManager: PluginManager): void;
@@ -1,6 +1,6 @@
1
1
  import configSchema from './configSchema';
2
2
  import AdapterType from '@jbrowse/core/pluggableElementTypes/AdapterType';
3
- export default (pluginManager) => {
3
+ export default function MultiWiggleAdapterF(pluginManager) {
4
4
  pluginManager.addAdapterType(() => new AdapterType({
5
5
  name: 'MultiWiggleAdapter',
6
6
  displayName: 'Multi-wiggle adapter',
@@ -15,4 +15,4 @@ export default (pluginManager) => {
15
15
  },
16
16
  getAdapterClass: () => import('./MultiWiggleAdapter').then(r => r.default),
17
17
  }));
18
- };
18
+ }
@@ -0,0 +1,2 @@
1
+ import PluginManager from '@jbrowse/core/PluginManager';
2
+ export default function MultiWiggleAddTrackWorkflowF(pm: PluginManager): void;
@@ -2,10 +2,10 @@ import { AddTrackWorkflowType } from '@jbrowse/core/pluggableElementTypes';
2
2
  import { types } from 'mobx-state-tree';
3
3
  // locals
4
4
  import { lazy } from 'react';
5
- export default (pm) => {
5
+ export default function MultiWiggleAddTrackWorkflowF(pm) {
6
6
  pm.addAddTrackWorkflowType(() => new AddTrackWorkflowType({
7
7
  name: 'Multi-wiggle track',
8
8
  ReactComponent: lazy(() => import('./AddTrackWorkflow')),
9
9
  stateModel: types.model({}),
10
10
  }));
11
- };
11
+ }
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiXYPlotRendererF(pluginManager: PluginManager): void;
@@ -1,11 +1,11 @@
1
1
  import ReactComponent from '../MultiWiggleRendering';
2
2
  import MultiXYPlotRenderer from './MultiXYPlotRenderer';
3
3
  import configSchema from './configSchema';
4
- export default (pluginManager) => {
4
+ export default function MultiXYPlotRendererF(pluginManager) {
5
5
  pluginManager.addRendererType(() => new MultiXYPlotRenderer({
6
6
  name: 'MultiXYPlotRenderer',
7
7
  ReactComponent,
8
8
  configSchema,
9
9
  pluginManager,
10
10
  }));
11
- };
11
+ }
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function QuantitativeTrackF(pluginManager: PluginManager): void;
@@ -1,7 +1,7 @@
1
1
  import { createBaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
2
2
  import TrackType from '@jbrowse/core/pluggableElementTypes/TrackType';
3
3
  import configSchemaF from './configSchema';
4
- export default (pluginManager) => {
4
+ export default function QuantitativeTrackF(pluginManager) {
5
5
  pluginManager.addTrackType(() => {
6
6
  const configSchema = configSchemaF(pluginManager);
7
7
  return new TrackType({
@@ -11,4 +11,4 @@ export default (pluginManager) => {
11
11
  stateModel: createBaseTrackModel(pluginManager, 'QuantitativeTrack', configSchema),
12
12
  });
13
13
  });
14
- };
14
+ }
package/esm/Tooltip.js CHANGED
@@ -39,6 +39,7 @@ const Tooltip = observer(function Tooltip({ model, height, clientMouseCoord, off
39
39
  const { classes } = useStyles();
40
40
  const { refs, floatingStyles, context } = useFloating({
41
41
  placement: 'right',
42
+ strategy: 'fixed',
42
43
  });
43
44
  const x = clientMouseCoord[0] + 5;
44
45
  const y = useClientY ? clientMouseCoord[1] : (clientRect === null || clientRect === void 0 ? void 0 : clientRect.top) || 0;
@@ -1,6 +1,5 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function XYPlotRendererF(pluginManager: PluginManager): void;
4
3
  export { default as XYPlotRenderer } from './XYPlotRenderer';
5
4
  export { default as ReactComponent } from '../WiggleRendering';
6
5
  export { default as configSchema } from './configSchema';
@@ -1,14 +1,14 @@
1
1
  import ReactComponent from '../WiggleRendering';
2
2
  import XYPlotRenderer from './XYPlotRenderer';
3
3
  import configSchema from './configSchema';
4
- export default (pluginManager) => {
4
+ export default function XYPlotRendererF(pluginManager) {
5
5
  pluginManager.addRendererType(() => new XYPlotRenderer({
6
6
  name: 'XYPlotRenderer',
7
7
  ReactComponent,
8
8
  configSchema,
9
9
  pluginManager,
10
10
  }));
11
- };
11
+ }
12
12
  export { default as XYPlotRenderer } from './XYPlotRenderer';
13
13
  export { default as ReactComponent } from '../WiggleRendering';
14
14
  export { default as configSchema } from './configSchema';
package/esm/index.js CHANGED
@@ -17,7 +17,7 @@ import MultiDensityRendererF from './MultiDensityRenderer';
17
17
  import MultiLineRendererF from './MultiLineRenderer';
18
18
  import MultiRowLineRendererF from './MultiRowLineRenderer';
19
19
  import CreateMultiWiggleExtensionF from './CreateMultiWiggleExtension';
20
- import MultiWiggleAddTrackWidgetF from './MultiWiggleAddTrackWidget';
20
+ import MultiWiggleAddTrackWorkflowF from './MultiWiggleAddTrackWorkflow';
21
21
  import * as utils from './util';
22
22
  import { WiggleGetGlobalQuantitativeStats, WiggleGetMultiRegionQuantitativeStats, MultiWiggleGetSources, } from './WiggleRPC/rpcMethods';
23
23
  import { ReactComponent as LinearWiggleDisplayReactComponent, modelFactory as linearWiggleDisplayModelFactory, } from './LinearWiggleDisplay';
@@ -51,7 +51,7 @@ export default class WigglePlugin extends Plugin {
51
51
  MultiDensityRendererF(pm);
52
52
  MultiLineRendererF(pm);
53
53
  MultiRowLineRendererF(pm);
54
- MultiWiggleAddTrackWidgetF(pm);
54
+ MultiWiggleAddTrackWorkflowF(pm);
55
55
  CreateMultiWiggleExtensionF(pm);
56
56
  pm.addToExtensionPoint('Core-guessAdapterForLocation', (cb) => {
57
57
  return (file, index, hint) => {
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-wiggle",
3
- "version": "2.11.0",
3
+ "version": "2.11.1",
4
4
  "description": "JBrowse 2 wiggle adapters, tracks, etc.",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -66,5 +66,5 @@
66
66
  "distModule": "esm/index.js",
67
67
  "srcModule": "src/index.ts",
68
68
  "module": "esm/index.js",
69
- "gitHead": "3d43a820b9274a6160aa4dc15616147f390d9094"
69
+ "gitHead": "11b28d66d782eb06f92ccb993108bb6c3c82819e"
70
70
  }
@@ -1,3 +0,0 @@
1
- import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pm: PluginManager) => void;
3
- export default _default;
@@ -1,3 +0,0 @@
1
- import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pm: PluginManager) => void;
3
- export default _default;