@jbrowse/plugin-wiggle 2.1.7 → 2.2.1

package/dist/XYPlotRenderer/configSchema.js

@@ -6,26 +6,48 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const configuration_1 = require("@jbrowse/core/configuration");
 const configSchema_1 = __importDefault(require("../configSchema"));
 const mobx_state_tree_1 = require("mobx-state-tree");
+/**
+ * #config XYPlotRenderer
+ */
+function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
 const configSchema = (0, configuration_1.ConfigurationSchema)('XYPlotRenderer', {
+    /**
+     * #slot
+     */
     filled: {
         type: 'boolean',
         defaultValue: true,
     },
+    /**
+     * #slot
+     */
     displayCrossHatches: {
         type: 'boolean',
         description: 'choose to draw cross hatches (sideways lines)',
         defaultValue: false,
     },
+    /**
+     * #slot
+     */
     summaryScoreMode: {
         type: 'stringEnum',
         model: mobx_state_tree_1.types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
         description: 'choose whether to use max/min/average or whiskers which combines all three into the same rendering',
         defaultValue: 'whiskers',
     },
+    /**
+     * #slot
+     */
     minSize: {
         type: 'number',
         defaultValue: 0,
     },
-}, { baseConfiguration: configSchema_1.default, explicitlyTyped: true });
+}, {
+    /**
+     * #baseConfiguration
+     */
+    baseConfiguration: configSchema_1.default,
+    explicitlyTyped: true,
+});
 exports.default = configSchema;
 //# sourceMappingURL=configSchema.js.map

package/dist/XYPlotRenderer/configSchema.js.map

@@ -1 +1 @@
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+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/XYPlotRenderer/configSchema.ts"],"names":[],"mappings":";;;;;AAAA,+DAAiE;AACjE,mEAA4D;AAC5D,qDAAuC;AAEvC;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,YAAY,GAAG,IAAA,mCAAmB,EACtC,gBAAgB,EAChB;IACE;;OAEG;IACH,MAAM,EAAE;QACN,IAAI,EAAE,SAAS;QACf,YAAY,EAAE,IAAI;KACnB;IACD;;OAEG;IACH,mBAAmB,EAAE;QACnB,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,+CAA+C;QAC5D,YAAY,EAAE,KAAK;KACpB;IACD;;OAEG;IACH,gBAAgB,EAAE;QAChB,IAAI,EAAE,YAAY;QAClB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,YAAY,EAAE,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,UAAU,CAAC,CAAC;QACzE,WAAW,EACT,oGAAoG;QACtG,YAAY,EAAE,UAAU;KACzB;IACD;;OAEG;IACH,OAAO,EAAE;QACP,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,CAAC;KAChB;CACF,EACD;IACE;;OAEG;IACH,iBAAiB,EAAE,sBAA8B;IACjD,eAAe,EAAE,IAAI;CACtB,CACF,CAAA;AAED,kBAAe,YAAY,CAAA"}

package/dist/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-export default _default;
+declare const WiggleRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default WiggleRenderer;

package/dist/configSchema.js

@@ -2,27 +2,47 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 const configuration_1 = require("@jbrowse/core/configuration");
 const mobx_state_tree_1 = require("mobx-state-tree");
-exports.default = (0, configuration_1.ConfigurationSchema)('WiggleRenderer', {
+/**
+ * #config WiggleRenderer
+ * this is the "base wiggle renderer config schema"
+ */
+function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
+const WiggleRenderer = (0, configuration_1.ConfigurationSchema)('WiggleRenderer', {
+    /**
+     * #slot
+     */
     color: {
         type: 'color',
         description: 'the color of track, overrides posColor and negColor',
         defaultValue: '#f0f',
     },
+    /**
+     * #slot
+     */
     posColor: {
         type: 'color',
         description: 'the color to use when the score is positive',
         defaultValue: 'blue',
     },
+    /**
+     * #slot
+     */
     negColor: {
         type: 'color',
         description: 'the color to use when the score is negative',
         defaultValue: 'red',
     },
+    /**
+     * #slot
+     */
     clipColor: {
         type: 'color',
         description: 'the color of the clipping marker',
         defaultValue: 'red',
     },
+    /**
+     * #slot
+     */
     bicolorPivot: {
         type: 'stringEnum',
         model: mobx_state_tree_1.types.enumeration('Scale type', [
@@ -34,10 +54,14 @@ exports.default = (0, configuration_1.ConfigurationSchema)('WiggleRenderer', {
         description: 'type of bicolor pivot',
         defaultValue: 'numeric',
     },
+    /**
+     * #slot
+     */
     bicolorPivotValue: {
         type: 'number',
         defaultValue: 0,
         description: 'value to use for bicolor pivot',
     },
 }, { explicitlyTyped: true });
+exports.default = WiggleRenderer;
 //# sourceMappingURL=configSchema.js.map

package/dist/configSchema.js.map

@@ -1 +1 @@
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+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../src/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AACjE,qDAAuC;AAEvC;;;GAGG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,cAAc,GAAG,IAAA,mCAAmB,EACxC,gBAAgB,EAChB;IACE;;OAEG;IACH,KAAK,EAAE;QACL,IAAI,EAAE,OAAO;QACb,WAAW,EAAE,qDAAqD;QAClE,YAAY,EAAE,MAAM;KACrB;IACD;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,OAAO;QACb,WAAW,EAAE,6CAA6C;QAC1D,YAAY,EAAE,MAAM;KACrB;IACD;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,OAAO;QACb,WAAW,EAAE,6CAA6C;QAC1D,YAAY,EAAE,KAAK;KACpB;IACD;;OAEG;IACH,SAAS,EAAE;QACT,IAAI,EAAE,OAAO;QACb,WAAW,EAAE,kCAAkC;QAC/C,YAAY,EAAE,KAAK;KACpB;IACD;;OAEG;IACH,YAAY,EAAE;QACZ,IAAI,EAAE,YAAY;QAClB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,YAAY,EAAE;YACrC,SAAS;YACT,MAAM;YACN,SAAS;YACT,MAAM;SACP,CAAC;QACF,WAAW,EAAE,uBAAuB;QACpC,YAAY,EAAE,SAAS;KACxB;IACD;;OAEG;IACH,iBAAiB,EAAE;QACjB,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,CAAC;QACf,WAAW,EAAE,gCAAgC;KAC9C;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA;AACD,kBAAe,cAAc,CAAA"}

package/dist/drawxy.js

@@ -40,7 +40,7 @@ function drawXY(ctx, props) {
     const toOrigin = (n) => toY(originY) - toY(n);
     const getHeight = (n) => (filled ? toOrigin(n) : Math.max(minSize, 1));
     let hasClipping = false;
-    let prevLeftPx = 0;
+    let prevLeftPx = -Infinity;
     const reducedFeatures = [];
     const crossingOrigin = niceMin < pivotValue && niceMax > pivotValue;
     // we handle whiskers separately to render max row, min row, and avg in three
@@ -52,7 +52,7 @@ function drawXY(ctx, props) {
         for (const feature of features.values()) {
             const [leftPx, rightPx] = (0, util_1.featureSpanPx)(feature, region, bpPerPx);
             if (feature.get('summary')) {
-                const w = rightPx - leftPx + fudgeFactor;
+                const w = Math.max(rightPx - leftPx + fudgeFactor, minSize);
                 const max = feature.get('maxScore');
                 const c = colorCallback(feature, max);
                 const effectiveC = crossingOrigin
@@ -177,7 +177,7 @@ function drawLine(ctx, props) {
     const [niceMin, niceMax] = scale.domain();
     const toY = (n) => (0, util_1.clamp)(height - (scale(n) || 0), 0, height) + offset;
     let lastVal;
-    let prevLeftPx = 0;
+    let prevLeftPx = -Infinity;
     const reducedFeatures = [];
     for (const feature of features.values()) {
         const [leftPx, rightPx] = (0, util_1.featureSpanPx)(feature, region, bpPerPx);
@@ -252,7 +252,7 @@ function drawDensity(ctx, props) {
         cb = (feature, score) => (0, configuration_1.readConfObject)(config, 'color', { feature, score });
     }
     const [niceMin, niceMax] = scale2.domain();
-    let prevLeftPx = 0;
+    let prevLeftPx = -Infinity;
     let hasClipping = false;
     const reducedFeatures = [];
     for (const feature of features.values()) {

package/dist/drawxy.js.map

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package/dist/index.d.ts

@@ -328,7 +328,7 @@ export default class WigglePlugin extends Plugin {
                 renderProps(): any;
                 readonly hasResolution: boolean;
                 readonly hasGlobalStats: boolean;
-                readonly fillSetting: 2 | 1 | 0;
+                readonly fillSetting: 1 | 2 | 0;
             } & {
                 trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
                     label: string;
@@ -625,7 +625,7 @@ export default class WigglePlugin extends Plugin {
                 renderProps(): any;
                 readonly hasResolution: boolean;
                 readonly hasGlobalStats: boolean;
-                readonly fillSetting: 2 | 1 | 0;
+                readonly fillSetting: 1 | 2 | 0;
             } & {
                 trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
                     label: string;
@@ -675,311 +675,7 @@ export default class WigglePlugin extends Plugin {
         WiggleBaseRenderer: typeof WiggleBaseRenderer;
         xyPlotRendererConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
         utils: typeof utils;
-        linearWiggleDisplayModelFactory: (pluginManager: PluginManager, configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        } & {
-            height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
-            blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
-                key: import("mobx-state-tree").ISimpleType<string>;
-                region: import("mobx-state-tree").IModelType<{
-                    refName: import("mobx-state-tree").ISimpleType<string>;
-                    start: import("mobx-state-tree").ISimpleType<number>;
-                    end: import("mobx-state-tree").ISimpleType<number>;
-                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                } & {
-                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
-                }, {
-                    setRefName(newRefName: string): void;
-                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-                reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
-                isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-            }, {
-                renderInProgress: AbortController | undefined;
-                filled: boolean;
-                reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
-                features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
-                layout: any;
-                status: string;
-                error: unknown;
-                message: string | undefined;
-                maxHeightReached: boolean;
-                ReactComponent: ({ model, }: {
-                    model: any;
-                }) => any;
-                renderProps: any;
-            } & {
-                doReload(): void;
-                afterAttach(): void;
-                setStatus(message: string): void;
-                setLoading(abortController: AbortController): void;
-                setMessage(messageText: string): void;
-                setRendered(props: {
-                    reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
-                    features: Map<string, import("@jbrowse/core/util").Feature>;
-                    layout: any;
-                    maxHeightReached: boolean;
-                    renderProps: any;
-                } | undefined): void;
-                setError(error: unknown): void;
-                reload(): void;
-                beforeDestroy(): void;
-            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-            userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-            userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-        } & {
-            type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
-            configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
-            selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
-            fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
-            minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-            color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-            posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-            negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-            summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-            rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-            scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-            autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-            displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
-            constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
-                max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-                min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-            }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
-        }, {
-            rendererTypeName: string;
-            error: unknown;
-        } & {
-            readonly RenderingComponent: import("react").FC<{
-                model: {
-                    id: string;
-                    type: string;
-                    rpcDriverName: string | undefined;
-                } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                    rendererTypeName: string;
-                    error: unknown;
-                } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                    type: import("mobx-state-tree").ISimpleType<string>;
-                    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-                }, {
-                    rendererTypeName: string;
-                    error: unknown;
-                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-                onHorizontalScroll?: Function | undefined;
-                blockState?: Record<string, any> | undefined;
-            }>;
-            readonly DisplayBlurb: import("react").FC<{
-                model: {
-                    id: string;
-                    type: string;
-                    rpcDriverName: string | undefined;
-                } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                    rendererTypeName: string;
-                    error: unknown;
-                } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                    type: import("mobx-state-tree").ISimpleType<string>;
-                    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-                }, {
-                    rendererTypeName: string;
-                    error: unknown;
-                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-            }> | null;
-            readonly adapterConfig: any;
-            readonly parentTrack: any;
-            renderProps(): any;
-            readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
-            readonly DisplayMessageComponent: import("react").FC<any> | undefined;
-            trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-            readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
-            regionCannotBeRendered(): undefined;
-        } & {
-            setError(error?: unknown): void;
-            setRpcDriverName(rpcDriverName: string): void;
-            reload(): void;
-        } & {
-            currBpPerPx: number;
-            message: string;
-            featureIdUnderMouse: string | undefined;
-            contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-            scrollTop: number;
-            estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
-            estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
-        } & {
-            readonly blockType: "dynamicBlocks" | "staticBlocks";
-            readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
-        } & {
-            readonly renderDelay: number;
-            readonly TooltipComponent: import("react").FC<any>;
-            readonly selectedFeatureId: string | undefined;
-            readonly DisplayMessageComponent: import("react").FC<any> | undefined;
-        } & {
-            readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
-            readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
-            getFeatureOverlapping(blockKey: string, x: number, y: number): any;
-            getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
-            searchFeatureByID(id: string): [number, number, number, number] | undefined;
-            readonly currentBytesRequested: number;
-            readonly currentFeatureScreenDensity: number;
-            readonly maxFeatureScreenDensity: any;
-            readonly estimatedStatsReady: boolean;
-            readonly maxAllowableBytes: number;
-        } & {
-            setMessage(message: string): void;
-            afterAttach(): void;
-            estimateRegionsStats(regions: import("@jbrowse/core/util/types").Region[], opts: {
-                headers?: Record<string, string> | undefined;
-                signal?: AbortSignal | undefined;
-                filters?: string[] | undefined;
-            }): Promise<{}>;
-            setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
-            setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
-            clearRegionStats(): void;
-            setHeight(displayHeight: number): number;
-            resizeHeight(distance: number): number;
-            setScrollTop(scrollTop: number): void;
-            updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
-            addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
-            setCurrBpPerPx(n: number): void;
-            deleteBlock(key: string): void;
-            selectFeature(feature: import("@jbrowse/core/util").Feature): void;
-            clearFeatureSelection(): void;
-            setFeatureIdUnderMouse(feature: string | undefined): void;
-            reload(): void;
-            setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
-        } & {
-            readonly regionTooLarge: boolean;
-            readonly regionTooLargeReason: string;
-        } & {
-            reload(): Promise<void>;
-            afterAttach(): void;
-        } & {
-            regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
-            regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | null;
-            trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-            contextMenuItems(): {
-                label: string;
-                icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-                    muiName: string;
-                };
-                onClick: () => void;
-            }[];
-            renderProps(): any;
-        } & {
-            renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
-                overrideHeight: number;
-            }): Promise<JSX.Element>;
-        } & {
-            statsReady: boolean;
-            message: string | undefined;
-            stats: {
-                scoreMin: number;
-                scoreMax: number;
-            };
-            statsFetchInProgress: AbortController | undefined;
-        } & {
-            updateStats(stats: {
-                scoreMin: number;
-                scoreMax: number;
-            }): void;
-            setColor(color?: string | undefined): void;
-            setPosColor(color?: string | undefined): void;
-            setNegColor(color?: string | undefined): void;
-            setLoading(aborter: AbortController): void;
-            selectFeature(feature: import("@jbrowse/core/util").Feature): void;
-            setResolution(res: number): void;
-            setFill(fill: number): void;
-            toggleLogScale(): void;
-            setScaleType(scale?: string | undefined): void;
-            setSummaryScoreMode(val: string): void;
-            setAutoscale(val: string): void;
-            setMaxScore(val?: number | undefined): void;
-            setRendererType(val: string): void;
-            setMinScore(val?: number | undefined): void;
-            toggleCrossHatches(): void;
-            setCrossHatches(cross: boolean): void;
-        } & {
-            readonly TooltipComponent: import("react").FC<{}>;
-            readonly adapterTypeName: any;
-            readonly rendererTypeNameSimple: any;
-            readonly rendererTypeName: string;
-            readonly filters: undefined;
-            readonly scaleType: any;
-            readonly maxScore: any;
-            readonly minScore: any;
-        } & {
-            readonly rendererConfig: {
-                [x: string]: any;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                setSubschema(slotName: string, data: unknown): any;
-            } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
-        } & {
-            readonly filled: any;
-            readonly summaryScoreModeSetting: any;
-            readonly domain: number[];
-            readonly needsScalebar: boolean;
-            readonly scaleOpts: {
-                domain: number[];
-                stats: {
-                    scoreMin: number;
-                    scoreMax: number;
-                };
-                autoscaleType: any;
-                scaleType: any;
-                inverted: any;
-            };
-            readonly canHaveFill: boolean;
-            readonly autoscaleType: any;
-            readonly displayCrossHatchesSetting: any;
-        } & {
-            readonly ticks: {
-                range: number[];
-                values: number[];
-                format: (d: import("d3-scale").NumberValue) => string;
-                position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
-            };
-            readonly adapterCapabilities: string[];
-        } & {
-            renderProps(): any;
-            readonly hasResolution: boolean;
-            readonly hasGlobalStats: boolean;
-            readonly fillSetting: 2 | 1 | 0;
-        } & {
-            trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
-                label: string;
-                subMenu: {
-                    label: string;
-                    type: string;
-                    checked: boolean;
-                    onClick: () => void;
-                }[];
-                type?: undefined;
-                checked?: undefined;
-                onClick?: undefined;
-            } | {
-                type: string;
-                label: string;
-                checked: any;
-                onClick: () => void;
-                subMenu?: undefined;
-            })[];
-        } & {
-            reload(): Promise<void>;
-            afterAttach(): void;
-            renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
-                overrideHeight: number;
-            }): Promise<JSX.Element>;
-        }, import("mobx-state-tree")._NotCustomized, {
-            type: string;
-            height: number;
-            id: string;
-            rpcDriverName: string | undefined;
-            userBpPerPxLimit: number | undefined;
-            userByteSizeLimit: number | undefined;
-        } & import("mobx-state-tree")._NotCustomized>;
+        linearWiggleDisplayModelFactory: typeof linearWiggleDisplayModelFactory;
     };
 }
 export * from './util';

package/esm/BigWigAdapter/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-export default _default;
+declare const BigWigAdapter: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default BigWigAdapter;

package/esm/BigWigAdapter/configSchema.js

@@ -1,5 +1,12 @@
 import { ConfigurationSchema } from '@jbrowse/core/configuration';
-export default ConfigurationSchema('BigWigAdapter', {
+/**
+ * #config BigWigAdapter
+ */
+function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
+const BigWigAdapter = ConfigurationSchema('BigWigAdapter', {
+    /**
+     * #slot
+     */
     bigWigLocation: {
         type: 'fileLocation',
         defaultValue: {
@@ -7,10 +14,14 @@ export default ConfigurationSchema('BigWigAdapter', {
             locationType: 'UriLocation',
         },
     },
+    /**
+     * #slot
+     */
     source: {
         type: 'string',
         defaultValue: '',
         description: 'Used for multiwiggle',
     },
 }, { explicitlyTyped: true });
+export default BigWigAdapter;
 //# sourceMappingURL=configSchema.js.map

package/esm/BigWigAdapter/configSchema.js.map

@@ -1 +1 @@
-{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/BigWigAdapter/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE,eAAe,mBAAmB,CAChC,eAAe,EACf;IACE,cAAc,EAAE;QACd,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE;YACZ,GAAG,EAAE,gBAAgB;YACrB,YAAY,EAAE,aAAa;SAC5B;KACF;IACD,MAAM,EAAE;QACN,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,sBAAsB;KACpC;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA"}
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/BigWigAdapter/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,aAAa,GAAG,mBAAmB,CACvC,eAAe,EACf;IACE;;OAEG;IACH,cAAc,EAAE;QACd,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE;YACZ,GAAG,EAAE,gBAAgB;YACrB,YAAY,EAAE,aAAa;SAC5B;KACF;IAED;;OAEG;IACH,MAAM,EAAE;QACN,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,sBAAsB;KACpC;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA;AAED,eAAe,aAAa,CAAA"}

package/esm/DensityRenderer/configSchema.js

@@ -1,5 +1,15 @@
 import { ConfigurationSchema } from '@jbrowse/core/configuration';
-import ConfigSchema from '../configSchema';
-const configSchema = ConfigurationSchema('DensityRenderer', {}, { baseConfiguration: ConfigSchema, explicitlyTyped: true });
+import baseWiggleRendererConfigSchema from '../configSchema';
+/**
+ * #config DensityRenderer
+ */
+function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
+const configSchema = ConfigurationSchema('DensityRenderer', {}, {
+    /**
+     * #baseConfiguration
+     */
+    baseConfiguration: baseWiggleRendererConfigSchema,
+    explicitlyTyped: true,
+});
 export default configSchema;
 //# sourceMappingURL=configSchema.js.map

package/esm/DensityRenderer/configSchema.js.map

@@ -1 +1 @@
-{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/DensityRenderer/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE,OAAO,YAAY,MAAM,iBAAiB,CAAA;AAE1C,MAAM,YAAY,GAAG,mBAAmB,CACtC,iBAAiB,EACjB,EAAE,EACF,EAAE,iBAAiB,EAAE,YAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AAED,eAAe,YAAY,CAAA"}
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/DensityRenderer/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE,OAAO,8BAA8B,MAAM,iBAAiB,CAAA;AAE5D;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,YAAY,GAAG,mBAAmB,CACtC,iBAAiB,EACjB,EAAE,EACF;IACE;;OAEG;IACH,iBAAiB,EAAE,8BAA8B;IACjD,eAAe,EAAE,IAAI;CACtB,CACF,CAAA;AAED,eAAe,YAAY,CAAA"}