@jbrowse/plugin-wiggle 2.1.4 → 2.1.5

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Files changed (29) hide show
  1. package/dist/CreateMultiWiggleExtension/index.js +48 -40
  2. package/dist/CreateMultiWiggleExtension/index.js.map +1 -1
  3. package/dist/LinearWiggleDisplay/models/model.d.ts +4 -4
  4. package/dist/LinearWiggleDisplay/models/model.js.map +1 -1
  5. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +1 -1
  6. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +4 -5
  7. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  8. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +1 -1
  9. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -1
  10. package/dist/MultiLinearWiggleDisplay/models/model.d.ts +1 -1
  11. package/dist/index.d.ts +12 -12
  12. package/esm/CreateMultiWiggleExtension/index.js +49 -41
  13. package/esm/CreateMultiWiggleExtension/index.js.map +1 -1
  14. package/esm/LinearWiggleDisplay/models/model.d.ts +4 -4
  15. package/esm/LinearWiggleDisplay/models/model.js.map +1 -1
  16. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +1 -1
  17. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +4 -5
  18. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  19. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +1 -1
  20. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -1
  21. package/esm/MultiLinearWiggleDisplay/models/model.d.ts +1 -1
  22. package/esm/index.d.ts +12 -12
  23. package/esm/index.js.map +1 -1
  24. package/package.json +2 -2
  25. package/src/CreateMultiWiggleExtension/index.ts +57 -46
  26. package/src/LinearWiggleDisplay/models/model.tsx +3 -3
  27. package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +5 -9
  28. package/src/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.tsx +1 -1
  29. package/src/index.ts +1 -1
package/dist/CreateMultiWiggleExtension/index.js CHANGED
@@ -28,48 +28,56 @@ const configuration_1 = require("@jbrowse/core/configuration");
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  const util_1 = require("@jbrowse/core/util");
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  const ConfirmDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./ConfirmDialog'))));
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  function default_1(pm) {
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- pm.addToExtensionPoint('TrackSelector-multiTrackMenuItems', () => {
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+ pm.addToExtensionPoint('TrackSelector-multiTrackMenuItems', (items, props) => {
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+ const { session } = props;
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  return [
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- {
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- label: 'Create multi-wiggle track',
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- onClick: (model) => {
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- const tracks = model.selection;
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- const trackIds = tracks.map(c => (0, configuration_1.readConfObject)(c, 'name'));
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- function makeTrack(arg) {
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- const subadapters = tracks
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- .map(c => (0, configuration_1.readConfObject)(c, 'adapter'))
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- .map((c, idx) => ({ ...c, source: trackIds[idx] }));
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- const assemblyNames = [
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- ...new Set(tracks.map(c => (0, configuration_1.readConfObject)(c, 'assemblyNames')).flat()),
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- ];
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- const now = +Date.now();
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- const trackId = `multitrack-${now}-sessionTrack`;
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- (0, util_1.getSession)(model).addTrackConf({
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- type: 'MultiQuantitativeTrack',
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- trackId,
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- name: arg.name,
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- assemblyNames,
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- adapter: {
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- type: 'MultiWiggleAdapter',
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- subadapters,
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- },
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- });
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- model.view.showTrack(trackId);
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- }
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- (0, util_1.getSession)(model).queueDialog(handleClose => [
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- ConfirmDialog,
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- {
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- tracks,
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- onClose: (arg, arg1) => {
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- if (arg) {
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- makeTrack(arg1);
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- }
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- handleClose();
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- },
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+ ...items,
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+ ...((0, util_1.isSessionWithAddTracks)(session)
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+ ? [
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+ {
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+ label: 'Create multi-wiggle track',
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+ onClick: (model) => {
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+ const tracks = model.selection;
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+ const trackIds = tracks.map(c => (0, configuration_1.readConfObject)(c, 'name'));
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+ function makeTrack(arg) {
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+ const subadapters = tracks
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+ .map(c => (0, configuration_1.readConfObject)(c, 'adapter'))
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+ .map((c, idx) => ({ ...c, source: trackIds[idx] }));
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+ const assemblyNames = [
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+ ...new Set(tracks
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+ .map(c => (0, configuration_1.readConfObject)(c, 'assemblyNames'))
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+ .flat()),
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+ ];
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+ const now = +Date.now();
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+ const trackId = `multitrack-${now}-sessionTrack`;
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+ (0, util_1.getSession)(model).addTrackConf({
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+ type: 'MultiQuantitativeTrack',
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+ trackId,
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+ name: arg.name,
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+ assemblyNames,
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+ adapter: {
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+ type: 'MultiWiggleAdapter',
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+ subadapters,
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+ },
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+ });
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+ model.view.showTrack(trackId);
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+ }
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+ (0, util_1.getSession)(model).queueDialog(handleClose => [
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+ ConfirmDialog,
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+ {
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+ tracks,
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+ onClose: (arg, arg1) => {
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+ if (arg && arg1) {
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+ makeTrack(arg1);
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+ }
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+ handleClose();
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+ },
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+ },
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+ ]);
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  },
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- ]);
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- },
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- },
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+ },
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+ ]
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+ : []),
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  ];
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  });
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  }
package/dist/CreateMultiWiggleExtension/index.js.map CHANGED
@@ -1 +1 @@
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+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/CreateMultiWiggleExtension/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,iCAA4B;AAE5B,+DAA4D;AAC5D,6CAAuE;AAGvE,MAAM,aAAa,GAAG,IAAA,YAAI,EAAC,GAAG,EAAE,mDAAQ,iBAAiB,GAAC,CAAC,CAAA;AAE3D,mBAAyB,EAAiB;IACxC,EAAE,CAAC,mBAAmB,CACpB,mCAAmC,EACnC,CAAC,KAAgB,EAAE,KAA8B,EAAE,EAAE;QACnD,MAAM,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;QACzB,OAAO;YACL,GAAG,KAAK;YACR,GAAG,CAAC,IAAA,6BAAsB,EAAC,OAAO,CAAC;gBACjC,CAAC,CAAC;oBACE;wBACE,KAAK,EAAE,2BAA2B;wBAClC,OAAO,EAAE,CAAC,KAAqC,EAAE,EAAE;4BACjD,MAAM,MAAM,GAAG,KAAK,CAAC,SAAS,CAAA;4BAC9B,MAAM,QAAQ,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAA,8BAAc,EAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAA;4BAC3D,SAAS,SAAS,CAAC,GAAqB;gCACtC,MAAM,WAAW,GAAG,MAAM;qCACvB,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAA,8BAAc,EAAC,CAAC,EAAE,SAAS,CAAC,CAAC;qCACtC,GAAG,CAAC,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,MAAM,EAAE,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAA;gCACrD,MAAM,aAAa,GAAG;oCACpB,GAAG,IAAI,GAAG,CACR,MAAM;yCACH,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAA,8BAAc,EAAC,CAAC,EAAE,eAAe,CAAC,CAAC;yCAC5C,IAAI,EAAE,CACV;iCACF,CAAA;gCACD,MAAM,GAAG,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,CAAA;gCACvB,MAAM,OAAO,GAAG,cAAc,GAAG,eAAe,CAAA;gCAEhD,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAC,YAAY,CAAC;oCAC7B,IAAI,EAAE,wBAAwB;oCAC9B,OAAO;oCACP,IAAI,EAAE,GAAG,CAAC,IAAI;oCACd,aAAa;oCACb,OAAO,EAAE;wCACP,IAAI,EAAE,oBAAoB;wCAC1B,WAAW;qCACZ;iCACF,CAAC,CAAA;gCACF,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;4BAC/B,CAAC;4BACD,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAC,WAAW,CAAC,WAAW,CAAC,EAAE,CAAC;gCAC3C,aAAa;gCACb;oCACE,MAAM;oCACN,OAAO,EAAE,CAAC,GAAY,EAAE,IAAuB,EAAE,EAAE;wCACjD,IAAI,GAAG,IAAI,IAAI,EAAE;4CACf,SAAS,CAAC,IAAI,CAAC,CAAA;yCAChB;wCACD,WAAW,EAAE,CAAA;oCACf,CAAC;iCACF;6BACF,CAAC,CAAA;wBACJ,CAAC;qBACF;iBACF;gBACH,CAAC,CAAC,EAAE,CAAC;SACR,CAAA;IACH,CAAC,CACF,CAAA;AACH,CAAC;AA3DD,4BA2DC"}
package/dist/LinearWiggleDisplay/models/model.d.ts CHANGED
@@ -186,7 +186,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
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  afterAttach(): void;
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  } & {
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  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
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- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
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+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
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  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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  contextMenuItems(): {
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  label: string;
@@ -213,9 +213,9 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
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  scoreMin: number;
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  scoreMax: number;
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  }): void;
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- setColor(color: string): void;
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- setPosColor(color: string): void;
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- setNegColor(color: string): void;
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+ setColor(color?: string): void;
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+ setPosColor(color?: string): void;
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+ setNegColor(color?: string): void;
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  setLoading(aborter: AbortController): void;
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  selectFeature(feature: Feature): void;
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  setResolution(res: number): void;
package/dist/LinearWiggleDisplay/models/model.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts CHANGED
@@ -2,7 +2,7 @@
2
2
  import { Source } from '../../util';
3
3
  export default function SetColorDialog({ model, handleClose, }: {
4
4
  model: {
5
- sources: Source[];
5
+ sources?: Source[];
6
6
  setLayout: (s: Source[]) => void;
7
7
  clearLayout: () => void;
8
8
  };
package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js CHANGED
@@ -63,8 +63,7 @@ function SetColorDialog({ model, handleClose, }) {
63
63
  const { classes } = useStyles();
64
64
  const { sources } = model;
65
65
  const [currLayout, setCurrLayout] = (0, react_1.useState)((0, clone_1.default)(sources || []));
66
- const [showTipsTmp, setShowTips] = (0, util_1.useLocalStorage)('multiwiggle-showTips', 'true');
67
- const showTips = showTipsTmp === 'true';
66
+ const [showTips, setShowTips] = (0, util_1.useLocalStorage)('multiwiggle-showTips', true);
68
67
  return (react_1.default.createElement(material_1.Dialog, { PaperComponent: PaperComponent, open: true, onClose: handleClose, maxWidth: "xl", "aria-labelledby": "draggable-dialog-title" // this area is important for the draggable functionality
69
68
  },
70
69
  react_1.default.createElement(material_1.DialogTitle, { style: { cursor: 'move' }, id: "draggable-dialog-title" },
@@ -73,7 +72,7 @@ function SetColorDialog({ model, handleClose, }) {
73
72
  react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: handleClose },
74
73
  react_1.default.createElement(Close_1.default, null))),
75
74
  react_1.default.createElement(material_1.DialogContent, { className: classes.content },
76
- react_1.default.createElement(material_1.Button, { variant: "contained", style: { float: 'right' }, onClick: () => setShowTips(showTips ? 'false' : 'true') }, showTips ? 'Hide tips' : 'Show tips'),
75
+ react_1.default.createElement(material_1.Button, { variant: "contained", style: { float: 'right' }, onClick: () => setShowTips(!showTips) }, showTips ? 'Hide tips' : 'Show tips'),
77
76
  react_1.default.createElement("br", null),
78
77
  showTips ? (react_1.default.createElement(react_1.default.Fragment, null,
79
78
  "Helpful tips",
@@ -89,11 +88,11 @@ function SetColorDialog({ model, handleClose, }) {
89
88
  react_1.default.createElement(material_1.DialogActions, null,
90
89
  react_1.default.createElement(material_1.Button, { variant: "contained", type: "submit", color: "inherit", onClick: () => {
91
90
  model.clearLayout();
92
- setCurrLayout(model.sources);
91
+ setCurrLayout(model.sources || []);
93
92
  } }, "Clear custom settings"),
94
93
  react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
95
94
  handleClose();
96
- setCurrLayout([...model.sources]);
95
+ setCurrLayout([...(model.sources || [])]);
97
96
  } }, "Cancel"),
98
97
  react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", type: "submit", onClick: () => {
99
98
  model.setLayout(currLayout);
package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js CHANGED
@@ -33,7 +33,7 @@ const Wrapper = (0, mobx_react_1.observer)(({ children, model, exportSVG, }) =>
33
33
  left: 0,
34
34
  pointerEvents: 'none',
35
35
  height,
36
- width: 1800,
36
+ width: (0, util_1.getContainingView)(model).width,
37
37
  } }, children));
38
38
  }
39
39
  });
package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map CHANGED
@@ -1 +1 @@
1
- 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1
+ 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package/dist/MultiLinearWiggleDisplay/models/model.d.ts CHANGED
@@ -193,7 +193,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
193
193
  afterAttach(): void;
194
194
  } & {
195
195
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
196
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
196
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
197
197
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
198
198
  contextMenuItems(): {
199
199
  label: string;
package/dist/index.d.ts CHANGED
@@ -240,7 +240,7 @@ export default class WigglePlugin extends Plugin {
240
240
  afterAttach(): void;
241
241
  } & {
242
242
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
243
- regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | undefined;
243
+ regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | null;
244
244
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
245
245
  contextMenuItems(): {
246
246
  label: string;
@@ -267,9 +267,9 @@ export default class WigglePlugin extends Plugin {
267
267
  scoreMin: number;
268
268
  scoreMax: number;
269
269
  }): void;
270
- setColor(color: string): void;
271
- setPosColor(color: string): void;
272
- setNegColor(color: string): void;
270
+ setColor(color?: string | undefined): void;
271
+ setPosColor(color?: string | undefined): void;
272
+ setNegColor(color?: string | undefined): void;
273
273
  setLoading(aborter: AbortController): void;
274
274
  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
275
275
  setResolution(res: number): void;
@@ -533,7 +533,7 @@ export default class WigglePlugin extends Plugin {
533
533
  afterAttach(): void;
534
534
  } & {
535
535
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
536
- regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | undefined;
536
+ regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | null;
537
537
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
538
538
  contextMenuItems(): {
539
539
  label: string;
@@ -560,9 +560,9 @@ export default class WigglePlugin extends Plugin {
560
560
  scoreMin: number;
561
561
  scoreMax: number;
562
562
  }): void;
563
- setColor(color: string): void;
564
- setPosColor(color: string): void;
565
- setNegColor(color: string): void;
563
+ setColor(color?: string | undefined): void;
564
+ setPosColor(color?: string | undefined): void;
565
+ setNegColor(color?: string | undefined): void;
566
566
  setLoading(aborter: AbortController): void;
567
567
  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
568
568
  setResolution(res: number): void;
@@ -850,7 +850,7 @@ export default class WigglePlugin extends Plugin {
850
850
  afterAttach(): void;
851
851
  } & {
852
852
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
853
- regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | undefined;
853
+ regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | null;
854
854
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
855
855
  contextMenuItems(): {
856
856
  label: string;
@@ -877,9 +877,9 @@ export default class WigglePlugin extends Plugin {
877
877
  scoreMin: number;
878
878
  scoreMax: number;
879
879
  }): void;
880
- setColor(color: string): void;
881
- setPosColor(color: string): void;
882
- setNegColor(color: string): void;
880
+ setColor(color?: string | undefined): void;
881
+ setPosColor(color?: string | undefined): void;
882
+ setNegColor(color?: string | undefined): void;
883
883
  setLoading(aborter: AbortController): void;
884
884
  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
885
885
  setResolution(res: number): void;
package/esm/CreateMultiWiggleExtension/index.js CHANGED
@@ -1,50 +1,58 @@
1
1
  import { lazy } from 'react';
2
2
  import { readConfObject } from '@jbrowse/core/configuration';
3
- import { getSession } from '@jbrowse/core/util';
3
+ import { getSession, isSessionWithAddTracks } from '@jbrowse/core/util';
4
4
  const ConfirmDialog = lazy(() => import('./ConfirmDialog'));
5
5
  export default function (pm) {
6
- pm.addToExtensionPoint('TrackSelector-multiTrackMenuItems', () => {
6
+ pm.addToExtensionPoint('TrackSelector-multiTrackMenuItems', (items, props) => {
7
+ const { session } = props;
7
8
  return [
8
- {
9
- label: 'Create multi-wiggle track',
10
- onClick: (model) => {
11
- const tracks = model.selection;
12
- const trackIds = tracks.map(c => readConfObject(c, 'name'));
13
- function makeTrack(arg) {
14
- const subadapters = tracks
15
- .map(c => readConfObject(c, 'adapter'))
16
- .map((c, idx) => ({ ...c, source: trackIds[idx] }));
17
- const assemblyNames = [
18
- ...new Set(tracks.map(c => readConfObject(c, 'assemblyNames')).flat()),
19
- ];
20
- const now = +Date.now();
21
- const trackId = `multitrack-${now}-sessionTrack`;
22
- getSession(model).addTrackConf({
23
- type: 'MultiQuantitativeTrack',
24
- trackId,
25
- name: arg.name,
26
- assemblyNames,
27
- adapter: {
28
- type: 'MultiWiggleAdapter',
29
- subadapters,
30
- },
31
- });
32
- model.view.showTrack(trackId);
33
- }
34
- getSession(model).queueDialog(handleClose => [
35
- ConfirmDialog,
36
- {
37
- tracks,
38
- onClose: (arg, arg1) => {
39
- if (arg) {
40
- makeTrack(arg1);
41
- }
42
- handleClose();
43
- },
9
+ ...items,
10
+ ...(isSessionWithAddTracks(session)
11
+ ? [
12
+ {
13
+ label: 'Create multi-wiggle track',
14
+ onClick: (model) => {
15
+ const tracks = model.selection;
16
+ const trackIds = tracks.map(c => readConfObject(c, 'name'));
17
+ function makeTrack(arg) {
18
+ const subadapters = tracks
19
+ .map(c => readConfObject(c, 'adapter'))
20
+ .map((c, idx) => ({ ...c, source: trackIds[idx] }));
21
+ const assemblyNames = [
22
+ ...new Set(tracks
23
+ .map(c => readConfObject(c, 'assemblyNames'))
24
+ .flat()),
25
+ ];
26
+ const now = +Date.now();
27
+ const trackId = `multitrack-${now}-sessionTrack`;
28
+ getSession(model).addTrackConf({
29
+ type: 'MultiQuantitativeTrack',
30
+ trackId,
31
+ name: arg.name,
32
+ assemblyNames,
33
+ adapter: {
34
+ type: 'MultiWiggleAdapter',
35
+ subadapters,
36
+ },
37
+ });
38
+ model.view.showTrack(trackId);
39
+ }
40
+ getSession(model).queueDialog(handleClose => [
41
+ ConfirmDialog,
42
+ {
43
+ tracks,
44
+ onClose: (arg, arg1) => {
45
+ if (arg && arg1) {
46
+ makeTrack(arg1);
47
+ }
48
+ handleClose();
49
+ },
50
+ },
51
+ ]);
44
52
  },
45
- ]);
46
- },
47
- },
53
+ },
54
+ ]
55
+ : []),
48
56
  ];
49
57
  });
50
58
  }
package/esm/CreateMultiWiggleExtension/index.js.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/CreateMultiWiggleExtension/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAE5B,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAA;AAC5D,OAAO,EAAE,UAAU,EAAE,sBAAsB,EAAE,MAAM,oBAAoB,CAAA;AAGvE,MAAM,aAAa,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,iBAAiB,CAAC,CAAC,CAAA;AAE3D,MAAM,CAAC,OAAO,WAAW,EAAiB;IACxC,EAAE,CAAC,mBAAmB,CACpB,mCAAmC,EACnC,CAAC,KAAgB,EAAE,KAA8B,EAAE,EAAE;QACnD,MAAM,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;QACzB,OAAO;YACL,GAAG,KAAK;YACR,GAAG,CAAC,sBAAsB,CAAC,OAAO,CAAC;gBACjC,CAAC,CAAC;oBACE;wBACE,KAAK,EAAE,2BAA2B;wBAClC,OAAO,EAAE,CAAC,KAAqC,EAAE,EAAE;4BACjD,MAAM,MAAM,GAAG,KAAK,CAAC,SAAS,CAAA;4BAC9B,MAAM,QAAQ,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,cAAc,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAA;4BAC3D,SAAS,SAAS,CAAC,GAAqB;gCACtC,MAAM,WAAW,GAAG,MAAM;qCACvB,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,cAAc,CAAC,CAAC,EAAE,SAAS,CAAC,CAAC;qCACtC,GAAG,CAAC,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,MAAM,EAAE,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAA;gCACrD,MAAM,aAAa,GAAG;oCACpB,GAAG,IAAI,GAAG,CACR,MAAM;yCACH,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,cAAc,CAAC,CAAC,EAAE,eAAe,CAAC,CAAC;yCAC5C,IAAI,EAAE,CACV;iCACF,CAAA;gCACD,MAAM,GAAG,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,CAAA;gCACvB,MAAM,OAAO,GAAG,cAAc,GAAG,eAAe,CAAA;gCAEhD,UAAU,CAAC,KAAK,CAAC,CAAC,YAAY,CAAC;oCAC7B,IAAI,EAAE,wBAAwB;oCAC9B,OAAO;oCACP,IAAI,EAAE,GAAG,CAAC,IAAI;oCACd,aAAa;oCACb,OAAO,EAAE;wCACP,IAAI,EAAE,oBAAoB;wCAC1B,WAAW;qCACZ;iCACF,CAAC,CAAA;gCACF,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;4BAC/B,CAAC;4BACD,UAAU,CAAC,KAAK,CAAC,CAAC,WAAW,CAAC,WAAW,CAAC,EAAE,CAAC;gCAC3C,aAAa;gCACb;oCACE,MAAM;oCACN,OAAO,EAAE,CAAC,GAAY,EAAE,IAAuB,EAAE,EAAE;wCACjD,IAAI,GAAG,IAAI,IAAI,EAAE;4CACf,SAAS,CAAC,IAAI,CAAC,CAAA;yCAChB;wCACD,WAAW,EAAE,CAAA;oCACf,CAAC;iCACF;6BACF,CAAC,CAAA;wBACJ,CAAC;qBACF;iBACF;gBACH,CAAC,CAAC,EAAE,CAAC;SACR,CAAA;IACH,CAAC,CACF,CAAA;AACH,CAAC"}
package/esm/LinearWiggleDisplay/models/model.d.ts CHANGED
@@ -186,7 +186,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
186
186
  afterAttach(): void;
187
187
  } & {
188
188
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
189
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
189
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
190
190
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
191
191
  contextMenuItems(): {
192
192
  label: string;
@@ -213,9 +213,9 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
213
213
  scoreMin: number;
214
214
  scoreMax: number;
215
215
  }): void;
216
- setColor(color: string): void;
217
- setPosColor(color: string): void;
218
- setNegColor(color: string): void;
216
+ setColor(color?: string): void;
217
+ setPosColor(color?: string): void;
218
+ setNegColor(color?: string): void;
219
219
  setLoading(aborter: AbortController): void;
220
220
  selectFeature(feature: Feature): void;
221
221
  setResolution(res: number): void;
package/esm/LinearWiggleDisplay/models/model.js.map CHANGED
@@ -1 +1 @@
1
- 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1
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package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts CHANGED
@@ -2,7 +2,7 @@
2
2
  import { Source } from '../../util';
3
3
  export default function SetColorDialog({ model, handleClose, }: {
4
4
  model: {
5
- sources: Source[];
5
+ sources?: Source[];
6
6
  setLayout: (s: Source[]) => void;
7
7
  clearLayout: () => void;
8
8
  };
package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js CHANGED
@@ -35,8 +35,7 @@ export default function SetColorDialog({ model, handleClose, }) {
35
35
  const { classes } = useStyles();
36
36
  const { sources } = model;
37
37
  const [currLayout, setCurrLayout] = useState(clone(sources || []));
38
- const [showTipsTmp, setShowTips] = useLocalStorage('multiwiggle-showTips', 'true');
39
- const showTips = showTipsTmp === 'true';
38
+ const [showTips, setShowTips] = useLocalStorage('multiwiggle-showTips', true);
40
39
  return (React.createElement(Dialog, { PaperComponent: PaperComponent, open: true, onClose: handleClose, maxWidth: "xl", "aria-labelledby": "draggable-dialog-title" // this area is important for the draggable functionality
41
40
  },
42
41
  React.createElement(DialogTitle, { style: { cursor: 'move' }, id: "draggable-dialog-title" },
@@ -45,7 +44,7 @@ export default function SetColorDialog({ model, handleClose, }) {
45
44
  React.createElement(IconButton, { className: classes.closeButton, onClick: handleClose },
46
45
  React.createElement(CloseIcon, null))),
47
46
  React.createElement(DialogContent, { className: classes.content },
48
- React.createElement(Button, { variant: "contained", style: { float: 'right' }, onClick: () => setShowTips(showTips ? 'false' : 'true') }, showTips ? 'Hide tips' : 'Show tips'),
47
+ React.createElement(Button, { variant: "contained", style: { float: 'right' }, onClick: () => setShowTips(!showTips) }, showTips ? 'Hide tips' : 'Show tips'),
49
48
  React.createElement("br", null),
50
49
  showTips ? (React.createElement(React.Fragment, null,
51
50
  "Helpful tips",
@@ -61,11 +60,11 @@ export default function SetColorDialog({ model, handleClose, }) {
61
60
  React.createElement(DialogActions, null,
62
61
  React.createElement(Button, { variant: "contained", type: "submit", color: "inherit", onClick: () => {
63
62
  model.clearLayout();
64
- setCurrLayout(model.sources);
63
+ setCurrLayout(model.sources || []);
65
64
  } }, "Clear custom settings"),
66
65
  React.createElement(Button, { variant: "contained", color: "secondary", onClick: () => {
67
66
  handleClose();
68
- setCurrLayout([...model.sources]);
67
+ setCurrLayout([...(model.sources || [])]);
69
68
  } }, "Cancel"),
70
69
  React.createElement(Button, { variant: "contained", color: "primary", type: "submit", onClick: () => {
71
70
  model.setLayout(currLayout);
package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map CHANGED
@@ -1 +1 @@
1
- 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package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js CHANGED
@@ -26,7 +26,7 @@ const Wrapper = observer(({ children, model, exportSVG, }) => {
26
26
  left: 0,
27
27
  pointerEvents: 'none',
28
28
  height,
29
- width: 1800,
29
+ width: getContainingView(model).width,
30
30
  } }, children));
31
31
  }
32
32
  });
package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map CHANGED
@@ -1 +1 @@
1
- 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1
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package/esm/MultiLinearWiggleDisplay/models/model.d.ts CHANGED
@@ -193,7 +193,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
193
193
  afterAttach(): void;
194
194
  } & {
195
195
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
196
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
196
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
197
197
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
198
198
  contextMenuItems(): {
199
199
  label: string;
package/esm/index.d.ts CHANGED
@@ -240,7 +240,7 @@ export default class WigglePlugin extends Plugin {
240
240
  afterAttach(): void;
241
241
  } & {
242
242
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
243
- regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | undefined;
243
+ regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | null;
244
244
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
245
245
  contextMenuItems(): {
246
246
  label: string;
@@ -267,9 +267,9 @@ export default class WigglePlugin extends Plugin {
267
267
  scoreMin: number;
268
268
  scoreMax: number;
269
269
  }): void;
270
- setColor(color: string): void;
271
- setPosColor(color: string): void;
272
- setNegColor(color: string): void;
270
+ setColor(color?: string | undefined): void;
271
+ setPosColor(color?: string | undefined): void;
272
+ setNegColor(color?: string | undefined): void;
273
273
  setLoading(aborter: AbortController): void;
274
274
  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
275
275
  setResolution(res: number): void;
@@ -533,7 +533,7 @@ export default class WigglePlugin extends Plugin {
533
533
  afterAttach(): void;
534
534
  } & {
535
535
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
536
- regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | undefined;
536
+ regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | null;
537
537
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
538
538
  contextMenuItems(): {
539
539
  label: string;
@@ -560,9 +560,9 @@ export default class WigglePlugin extends Plugin {
560
560
  scoreMin: number;
561
561
  scoreMax: number;
562
562
  }): void;
563
- setColor(color: string): void;
564
- setPosColor(color: string): void;
565
- setNegColor(color: string): void;
563
+ setColor(color?: string | undefined): void;
564
+ setPosColor(color?: string | undefined): void;
565
+ setNegColor(color?: string | undefined): void;
566
566
  setLoading(aborter: AbortController): void;
567
567
  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
568
568
  setResolution(res: number): void;
@@ -850,7 +850,7 @@ export default class WigglePlugin extends Plugin {
850
850
  afterAttach(): void;
851
851
  } & {
852
852
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
853
- regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | undefined;
853
+ regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | null;
854
854
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
855
855
  contextMenuItems(): {
856
856
  label: string;
@@ -877,9 +877,9 @@ export default class WigglePlugin extends Plugin {
877
877
  scoreMin: number;
878
878
  scoreMax: number;
879
879
  }): void;
880
- setColor(color: string): void;
881
- setPosColor(color: string): void;
882
- setNegColor(color: string): void;
880
+ setColor(color?: string | undefined): void;
881
+ setPosColor(color?: string | undefined): void;
882
+ setNegColor(color?: string | undefined): void;
883
883
  setLoading(aborter: AbortController): void;
884
884
  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
885
885
  setResolution(res: number): void;
package/esm/index.js.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,MAAM,MAAM,sBAAsB,CAAA;AAGzC,OAAO,EAGL,WAAW,GACZ,MAAM,2BAA2B,CAAA;AAElC,SAAS;AACT,OAAO,kBAAkB,MAAM,sBAAsB,CAAA;AACrD,OAAO,eAAe,MAAM,mBAAmB,CAAA;AAC/C,OAAO,cAAc,MAAM,iBAAiB,CAAA;AAC5C,OAAO,kBAAkB,MAAM,qBAAqB,CAAA;AACpD,OAAO,uBAAuB,MAAM,0BAA0B,CAAA;AAC9D,OAAO,mBAAmB,MAAM,sBAAsB,CAAA;AACtD,OAAO,gBAAgB,MAAM,mBAAmB,CAAA;AAChD,OAAO,eAAe,MAAM,kBAAkB,CAAA;AAC9C,OAAO,iBAAiB,MAAM,oBAAoB,CAAA;AAClD,OAAO,oBAAoB,MAAM,uBAAuB,CAAA;AACxD,OAAO,yBAAyB,MAAM,4BAA4B,CAAA;AAClE,OAAO,oBAAoB,MAAM,uBAAuB,CAAA;AACxD,OAAO,uBAAuB,MAAM,0BAA0B,CAAA;AAC9D,OAAO,qBAAqB,MAAM,wBAAwB,CAAA;AAC1D,OAAO,kBAAkB,MAAM,qBAAqB,CAAA;AACpD,OAAO,qBAAqB,MAAM,wBAAwB,CAAA;AAC1D,OAAO,2BAA2B,MAAM,8BAA8B,CAAA;AACtE,OAAO,0BAA0B,MAAM,6BAA6B,CAAA;AAEpE,OAAO,KAAK,KAAK,MAAM,QAAQ,CAAA;AAE/B,OAAO,EACL,oBAAoB,EACpB,yBAAyB,EACzB,qBAAqB,GACtB,MAAM,wBAAwB,CAAA;AAE/B,OAAO,EACL,cAAc,IAAI,iCAAiC,EACnD,YAAY,IAAI,+BAA+B,EAC/C,OAAO,GACR,MAAM,uBAAuB,CAAA;AAE9B,OAAO,EACL,cAAc,IAAI,4BAA4B,EAC9C,YAAY,IAAI,0BAA0B,EAC1C,cAAc,GACf,MAAM,kBAAkB,CAAA;AAEzB,MAAM,CAAC,OAAO,OAAO,YAAa,SAAQ,MAAM;IAAhD;;QACE,SAAI,GAAG,cAAc,CAAA;QA2DrB,YAAO,GAAG;YACR,iCAAiC;YACjC,4BAA4B;YAC5B,cAAc;YACd,kBAAkB;YAElB,0BAA0B;YAC1B,KAAK;YACL,+BAA+B;SAChC,CAAA;IACH,CAAC;IAnEC,OAAO,CAAC,EAAiB;QACvB,mBAAmB,CAAC,EAAE,CAAC,CAAA;QACvB,cAAc,CAAC,EAAE,CAAC,CAAA;QAClB,kBAAkB,CAAC,EAAE,CAAC,CAAA;QACtB,uBAAuB,CAAC,EAAE,CAAC,CAAA;QAC3B,oBAAoB,CAAC,EAAE,CAAC,CAAA;QACxB,yBAAyB,CAAC,EAAE,CAAC,CAAA;QAC7B,iBAAiB,CAAC,EAAE,CAAC,CAAA;QACrB,eAAe,CAAC,EAAE,CAAC,CAAA;QACnB,gBAAgB,CAAC,EAAE,CAAC,CAAA;QACpB,oBAAoB,CAAC,EAAE,CAAC,CAAA;QACxB,uBAAuB,CAAC,EAAE,CAAC,CAAA;QAC3B,qBAAqB,CAAC,EAAE,CAAC,CAAA;QACzB,kBAAkB,CAAC,EAAE,CAAC,CAAA;QACtB,qBAAqB,CAAC,EAAE,CAAC,CAAA;QACzB,0BAA0B,CAAC,EAAE,CAAC,CAAA;QAC9B,2BAA2B,CAAC,EAAE,CAAC,CAAA;QAE/B,EAAE,CAAC,mBAAmB,CACpB,8BAA8B,EAC9B,CAAC,EAAkB,EAAE,EAAE;YACrB,OAAO,CAAC,IAAkB,EAAE,KAAoB,EAAE,IAAa,EAAE,EAAE;gBACjE,MAAM,UAAU,GAAG,iBAAiB,CAAA;gBACpC,MAAM,WAAW,GAAG,eAAe,CAAA;gBACnC,MAAM,QAAQ,GAAG,WAAW,CAAC,IAAI,CAAC,CAAA;gBAClC,MAAM,GAAG,GAAG;oBACV,IAAI,EAAE,WAAW;oBACjB,cAAc,EAAE,IAAI;iBACrB,CAAA;gBAED,IAAI,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,EAAE;oBACtC,OAAO,GAAG,CAAA;iBACX;qBAAM,IAAI,IAAI,KAAK,WAAW,EAAE;oBAC/B,OAAO,GAAG,CAAA;iBACX;gBAED,OAAO,EAAE,CAAC,IAAI,EAAE,KAAK,EAAE,IAAI,CAAC,CAAA;YAC9B,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QACD,EAAE,CAAC,mBAAmB,CACpB,gCAAgC,EAChC,CAAC,gBAAkC,EAAE,EAAE;YACrC,OAAO,CAAC,WAAmB,EAAE,EAAE;gBAC7B,IAAI,WAAW,KAAK,eAAe,EAAE;oBACnC,OAAO,mBAAmB,CAAA;iBAC3B;gBACD,OAAO,gBAAgB,CAAC,WAAW,CAAC,CAAA;YACtC,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QAED,EAAE,CAAC,YAAY,CAAC,GAAG,EAAE,CAAC,IAAI,oBAAoB,CAAC,EAAE,CAAC,CAAC,CAAA;QACnD,EAAE,CAAC,YAAY,CAAC,GAAG,EAAE,CAAC,IAAI,yBAAyB,CAAC,EAAE,CAAC,CAAC,CAAA;QACxD,EAAE,CAAC,YAAY,CAAC,GAAG,EAAE,CAAC,IAAI,qBAAqB,CAAC,EAAE,CAAC,CAAC,CAAA;IACtD,CAAC;CAYF;AAED,cAAc,QAAQ,CAAA;AAEtB,OAAO,EACL,iCAAiC,EACjC,OAAO,EACP,eAAe,EACf,kBAAkB,EAClB,+BAA+B,GAChC,CAAA"}
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-wiggle",
3
- "version": "2.1.4",
3
+ "version": "2.1.5",
4
4
  "description": "JBrowse 2 wiggle adapters, tracks, etc.",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -70,5 +70,5 @@
70
70
  "distModule": "esm/index.js",
71
71
  "srcModule": "src/index.ts",
72
72
  "module": "esm/index.js",
73
- "gitHead": "8f53e016dd83b01a1beea0fc61c33964f5b6c809"
73
+ "gitHead": "bc5253ecdddeceeb999fffebf6dc6cf5f444e1c9"
74
74
  }
package/src/CreateMultiWiggleExtension/index.ts CHANGED
@@ -1,57 +1,68 @@
1
1
  import { lazy } from 'react'
2
2
  import PluginManager from '@jbrowse/core/PluginManager'
3
3
  import { readConfObject } from '@jbrowse/core/configuration'
4
- import { getSession } from '@jbrowse/core/util'
4
+ import { getSession, isSessionWithAddTracks } from '@jbrowse/core/util'
5
5
  import { HierarchicalTrackSelectorModel } from '@jbrowse/plugin-data-management'
6
6
 
7
7
  const ConfirmDialog = lazy(() => import('./ConfirmDialog'))
8
8
 
9
9
  export default function (pm: PluginManager) {
10
- pm.addToExtensionPoint('TrackSelector-multiTrackMenuItems', () => {
11
- return [
12
- {
13
- label: 'Create multi-wiggle track',
14
- onClick: (model: HierarchicalTrackSelectorModel) => {
15
- const tracks = model.selection
16
- const trackIds = tracks.map(c => readConfObject(c, 'name'))
17
- function makeTrack(arg: { name: string }) {
18
- const subadapters = tracks
19
- .map(c => readConfObject(c, 'adapter'))
20
- .map((c, idx) => ({ ...c, source: trackIds[idx] }))
21
- const assemblyNames = [
22
- ...new Set(
23
- tracks.map(c => readConfObject(c, 'assemblyNames')).flat(),
24
- ),
25
- ]
26
- const now = +Date.now()
27
- const trackId = `multitrack-${now}-sessionTrack`
10
+ pm.addToExtensionPoint(
11
+ 'TrackSelector-multiTrackMenuItems',
12
+ (items: unknown[], props: Record<string, unknown>) => {
13
+ const { session } = props
14
+ return [
15
+ ...items,
16
+ ...(isSessionWithAddTracks(session)
17
+ ? [
18
+ {
19
+ label: 'Create multi-wiggle track',
20
+ onClick: (model: HierarchicalTrackSelectorModel) => {
21
+ const tracks = model.selection
22
+ const trackIds = tracks.map(c => readConfObject(c, 'name'))
23
+ function makeTrack(arg: { name: string }) {
24
+ const subadapters = tracks
25
+ .map(c => readConfObject(c, 'adapter'))
26
+ .map((c, idx) => ({ ...c, source: trackIds[idx] }))
27
+ const assemblyNames = [
28
+ ...new Set(
29
+ tracks
30
+ .map(c => readConfObject(c, 'assemblyNames'))
31
+ .flat(),
32
+ ),
33
+ ]
34
+ const now = +Date.now()
35
+ const trackId = `multitrack-${now}-sessionTrack`
28
36
 
29
- getSession(model).addTrackConf({
30
- type: 'MultiQuantitativeTrack',
31
- trackId,
32
- name: arg.name,
33
- assemblyNames,
34
- adapter: {
35
- type: 'MultiWiggleAdapter',
36
- subadapters,
37
- },
38
- })
39
- model.view.showTrack(trackId)
40
- }
41
- getSession(model).queueDialog(handleClose => [
42
- ConfirmDialog,
43
- {
44
- tracks,
45
- onClose: (arg: boolean, arg1: { name: string }) => {
46
- if (arg) {
47
- makeTrack(arg1)
48
- }
49
- handleClose()
37
+ getSession(model).addTrackConf({
38
+ type: 'MultiQuantitativeTrack',
39
+ trackId,
40
+ name: arg.name,
41
+ assemblyNames,
42
+ adapter: {
43
+ type: 'MultiWiggleAdapter',
44
+ subadapters,
45
+ },
46
+ })
47
+ model.view.showTrack(trackId)
48
+ }
49
+ getSession(model).queueDialog(handleClose => [
50
+ ConfirmDialog,
51
+ {
52
+ tracks,
53
+ onClose: (arg: boolean, arg1?: { name: string }) => {
54
+ if (arg && arg1) {
55
+ makeTrack(arg1)
56
+ }
57
+ handleClose()
58
+ },
59
+ },
60
+ ])
61
+ },
50
62
  },
51
- },
52
- ])
53
- },
54
- },
55
- ]
56
- })
63
+ ]
64
+ : []),
65
+ ]
66
+ },
67
+ )
57
68
  }
package/src/LinearWiggleDisplay/models/model.tsx CHANGED
@@ -93,13 +93,13 @@ const stateModelFactory = (
93
93
  self.statsReady = true
94
94
  }
95
95
  },
96
- setColor(color: string) {
96
+ setColor(color?: string) {
97
97
  self.color = color
98
98
  },
99
- setPosColor(color: string) {
99
+ setPosColor(color?: string) {
100
100
  self.posColor = color
101
101
  },
102
- setNegColor(color: string) {
102
+ setNegColor(color?: string) {
103
103
  self.negColor = color
104
104
  },
105
105
 
package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx CHANGED
@@ -61,7 +61,7 @@ export default function SetColorDialog({
61
61
  handleClose,
62
62
  }: {
63
63
  model: {
64
- sources: Source[]
64
+ sources?: Source[]
65
65
  setLayout: (s: Source[]) => void
66
66
  clearLayout: () => void
67
67
  }
@@ -70,11 +70,7 @@ export default function SetColorDialog({
70
70
  const { classes } = useStyles()
71
71
  const { sources } = model
72
72
  const [currLayout, setCurrLayout] = useState(clone(sources || []))
73
- const [showTipsTmp, setShowTips] = useLocalStorage(
74
- 'multiwiggle-showTips',
75
- 'true',
76
- )
77
- const showTips = showTipsTmp === 'true'
73
+ const [showTips, setShowTips] = useLocalStorage('multiwiggle-showTips', true)
78
74
  return (
79
75
  <Dialog
80
76
  PaperComponent={PaperComponent}
@@ -93,7 +89,7 @@ export default function SetColorDialog({
93
89
  <Button
94
90
  variant="contained"
95
91
  style={{ float: 'right' }}
96
- onClick={() => setShowTips(showTips ? 'false' : 'true')}
92
+ onClick={() => setShowTips(!showTips)}
97
93
  >
98
94
  {showTips ? 'Hide tips' : 'Show tips'}
99
95
  </Button>
@@ -136,7 +132,7 @@ export default function SetColorDialog({
136
132
  color="inherit"
137
133
  onClick={() => {
138
134
  model.clearLayout()
139
- setCurrLayout(model.sources)
135
+ setCurrLayout(model.sources || [])
140
136
  }}
141
137
  >
142
138
  Clear custom settings
@@ -146,7 +142,7 @@ export default function SetColorDialog({
146
142
  color="secondary"
147
143
  onClick={() => {
148
144
  handleClose()
149
- setCurrLayout([...model.sources])
145
+ setCurrLayout([...(model.sources || [])])
150
146
  }}
151
147
  >
152
148
  Cancel
package/src/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.tsx CHANGED
@@ -51,7 +51,7 @@ const Wrapper = observer(
51
51
  left: 0,
52
52
  pointerEvents: 'none',
53
53
  height,
54
- width: 1800,
54
+ width: getContainingView(model).width,
55
55
  }}
56
56
  >
57
57
  {children}
package/src/index.ts CHANGED
@@ -3,8 +3,8 @@ import PluginManager from '@jbrowse/core/PluginManager'
3
3
  import { FileLocation } from '@jbrowse/core/util/types'
4
4
  import {
5
5
  AdapterGuesser,
6
- getFileName,
7
6
  TrackTypeGuesser,
7
+ getFileName,
8
8
  } from '@jbrowse/core/util/tracks'
9
9
 
10
10
  // locals