@jbrowse/plugin-wiggle 1.7.3 → 1.7.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/BigWigAdapter.js +22 -22
- package/dist/BigWigAdapter/BigWigAdapter.test.js +9 -9
- package/dist/BigWigAdapter/configSchema.js +2 -2
- package/dist/BigWigAdapter/index.js +1 -1
- package/dist/DensityRenderer/DensityRenderer.test.js +6 -6
- package/dist/DensityRenderer/index.js +13 -13
- package/dist/LinePlotRenderer/LinePlotRenderer.js +12 -12
- package/dist/LinePlotRenderer/configSchema.js +2 -2
- package/dist/LinePlotRenderer/index.js +3 -3
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js +14 -14
- package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js +13 -13
- package/dist/LinearWiggleDisplay/components/Tooltip.js +14 -14
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +5 -5
- package/dist/LinearWiggleDisplay/components/YScaleBar.js +3 -3
- package/dist/LinearWiggleDisplay/index.js +4 -4
- package/dist/LinearWiggleDisplay/models/configSchema.js +1 -1
- package/dist/LinearWiggleDisplay/models/model.d.ts +1 -1
- package/dist/LinearWiggleDisplay/models/model.js +27 -27
- package/dist/WiggleBaseRenderer.js +13 -13
- package/dist/WiggleRPC/rpcMethods.js +27 -27
- package/dist/WiggleRendering.js +7 -7
- package/dist/WiggleRendering.test.js +3 -3
- package/dist/XYPlotRenderer/XYPlotRenderer.js +15 -15
- package/dist/XYPlotRenderer/XYPlotRenderer.test.js +6 -6
- package/dist/XYPlotRenderer/index.js +3 -3
- package/dist/configSchema.js +2 -2
- package/dist/index.d.ts +3 -3
- package/dist/index.js +21 -21
- package/dist/index.test.js +2 -2
- package/dist/util.js +4 -4
- package/package.json +4 -5
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@@ -39,48 +39,48 @@ var _serializableFilterChain = _interopRequireDefault(require("@jbrowse/core/plu
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function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
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function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2
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function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2
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function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
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function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
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var WiggleGetGlobalStats = /*#__PURE__*/function (_RpcMethodType) {
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(0, _inherits2
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(0, _inherits2.default)(WiggleGetGlobalStats, _RpcMethodType);
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var _super = _createSuper(WiggleGetGlobalStats);
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function WiggleGetGlobalStats() {
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var _this;
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(0, _classCallCheck2
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(0, _classCallCheck2.default)(this, WiggleGetGlobalStats);
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for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
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args[_key] = arguments[_key];
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}
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_this = _super.call.apply(_super, [this].concat(args));
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(0, _defineProperty2
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(0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'WiggleGetGlobalStats');
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return _this;
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}
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(0, _createClass2.default)(WiggleGetGlobalStats, [{
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key: "deserializeArguments",
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value: // eslint-disable-next-line @typescript-eslint/no-explicit-any
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function () {
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var _deserializeArguments = (0, _asyncToGenerator2
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var _deserializeArguments = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(args, rpcDriverClassName) {
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var l;
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return _regenerator
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return _regenerator.default.wrap(function _callee$(_context) {
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_context.next = 2;
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return (0, _get2
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return (0, _get2.default)((0, _getPrototypeOf2.default)(WiggleGetGlobalStats.prototype), "deserializeArguments", this).call(this, args, rpcDriverClassName);
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case 2:
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l = _context.sent;
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return _context.abrupt("return", _objectSpread(_objectSpread({}, l), {}, {
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filters: args.filters ? new _serializableFilterChain
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filters: args.filters ? new _serializableFilterChain.default({
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filters: args.filters
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}) : undefined
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}));
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@@ -102,10 +102,10 @@ var WiggleGetGlobalStats = /*#__PURE__*/function (_RpcMethodType) {
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}, {
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key: "execute",
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value: function () {
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var _execute = (0, _asyncToGenerator2
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var _execute = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(args, rpcDriverClassName) {
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var deserializedArgs, adapterConfig, sessionId, _yield$getAdapter, dataAdapter;
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return _regenerator.default.wrap(function _callee2$(_context2) {
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switch (_context2.prev = _context2.next) {
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case 0:
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}()
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}]);
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return WiggleGetGlobalStats;
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}(_RpcMethodType3
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}(_RpcMethodType3.default);
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exports.WiggleGetGlobalStats = WiggleGetGlobalStats;
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var WiggleGetMultiRegionStats = /*#__PURE__*/function (_RpcMethodType2) {
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(0, _inherits2
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(0, _inherits2.default)(WiggleGetMultiRegionStats, _RpcMethodType2);
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var _super2 = _createSuper(WiggleGetMultiRegionStats);
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function WiggleGetMultiRegionStats() {
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var _this2;
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(0, _classCallCheck2.default)(this, WiggleGetMultiRegionStats);
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for (var _len2 = arguments.length, args = new Array(_len2), _key2 = 0; _key2 < _len2; _key2++) {
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}
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_this2 = _super2.call.apply(_super2, [this].concat(args));
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(0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this2), "name", 'WiggleGetMultiRegionStats');
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return _this2;
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}
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(0, _createClass2.default)(WiggleGetMultiRegionStats, [{
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value: // eslint-disable-next-line @typescript-eslint/no-explicit-any
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function () {
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var _deserializeArguments2 = (0, _asyncToGenerator2
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var _deserializeArguments2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3(args, rpcDriverClassName) {
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return _regenerator.default.wrap(function _callee3$(_context3) {
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return (0, _get2.default)((0, _getPrototypeOf2.default)(WiggleGetMultiRegionStats.prototype), "deserializeArguments", this).call(this, args, rpcDriverClassName);
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return _context3.abrupt("return", _objectSpread(_objectSpread({}, l), {}, {
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filters: args.filters ? new _serializableFilterChain
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filters: args.filters ? new _serializableFilterChain.default({
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}) : undefined
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}));
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var _serializeArguments = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4(args, rpcDriverClassName) {
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var _this$pluginManager$r, _this$pluginManager$r2;
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return _context4.abrupt("return", (0, _get2.default)((0, _getPrototypeOf2.default)(WiggleGetMultiRegionStats.prototype), "serializeArguments", this).call(this, renamedArgs, rpcDriverClassName));
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case "end":
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var _execute2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee5(args, rpcDriverClassName) {
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var deserializedArgs, regions, adapterConfig, sessionId, _yield$getAdapter2, dataAdapter;
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}()
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}]);
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return WiggleGetMultiRegionStats;
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}(_RpcMethodType3
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}(_RpcMethodType3.default);
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exports.WiggleGetMultiRegionStats = WiggleGetMultiRegionStats;
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package/dist/WiggleRendering.js
CHANGED
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var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
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function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it
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function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
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function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
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_props$onFeatureClick = props.onFeatureClick,
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onFeatureClick = _props$onFeatureClick === void 0 ? function () {} : _props$onFeatureClick;
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var _regions = (0, _slicedToArray2
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var _regions = (0, _slicedToArray2.default)(regions, 1),
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region = _regions[0];
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var ref = (0, _react.useRef)(null);
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return featureUnderMouse;
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return /*#__PURE__*/_react.default.createElement("div", {
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"data-testid": "wiggle-rendering-test",
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height: height
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}, /*#__PURE__*/_react
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function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it
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function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
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function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2
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function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2
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function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
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function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
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var _regions = (0, _slicedToArray2
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@@ -91,7 +91,7 @@ var XYPlotRenderer = /*#__PURE__*/function (_WiggleBaseRenderer) {
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_featureSpanPx2 = (0, _slicedToArray2
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_featureSpanPx2 = (0, _slicedToArray2.default)(_featureSpanPx, 2),
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ctx.fillStyle = crossingOrigin ? colorCallback(feature, maxr) : (0, _color.default)(c).lighten(0.6).toString();
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ctx.fillStyle = crossingOrigin && summary ? (0, _color
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ctx.fillStyle = crossingOrigin ? colorCallback(feature, minr) : (0, _color
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ctx.fillStyle = crossingOrigin ? colorCallback(feature, minr) : (0, _color.default)(c).darken(0.6).toString();
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}]);
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}(_WiggleBaseRenderer2
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}(_WiggleBaseRenderer2.default);
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exports
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exports.default = XYPlotRenderer;
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@@ -16,30 +16,30 @@ var _ = _interopRequireWildcard(require("."));
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function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return {
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function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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test('several features', /*#__PURE__*/(0, _asyncToGenerator2
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test('several features', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
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var pluginManager, renderer, renderProps, res;
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return _regenerator
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return _regenerator.default.wrap(function _callee$(_context) {
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pluginManager = {};
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renderer = new _
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+
renderer = new _.default({
|
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name: 'XYPlotRenderer',
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ReactComponent: _.ReactComponent,
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pluginManager: pluginManager
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});
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renderProps = {
|
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features: [new _simpleFeature
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features: [new _simpleFeature.default({
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id: 't1',
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data: {
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start: 1,
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end: 100,
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score: 1
|
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41
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}
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-
}), new _simpleFeature
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+
}), new _simpleFeature.default({
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|
id: 't2',
|
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data: {
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start: 101,
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|
@@ -8,14 +8,14 @@ Object.defineProperty(exports, "__esModule", {
|
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8
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|
Object.defineProperty(exports, "ReactComponent", {
|
|
9
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|
enumerable: true,
|
|
10
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get: function get() {
|
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11
|
-
return _WiggleRendering
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|
+
return _WiggleRendering.default;
|
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13
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});
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exports.configSchema = void 0;
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Object.defineProperty(exports, "default", {
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enumerable: true,
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get: function get() {
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return _XYPlotRenderer
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+
return _XYPlotRenderer.default;
|
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|
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|
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@@ -28,7 +28,7 @@ var _WiggleRendering = _interopRequireDefault(require("../WiggleRendering"));
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28
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|
var _XYPlotRenderer = _interopRequireDefault(require("./XYPlotRenderer"));
|
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30
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var configSchema = (0, _configuration.ConfigurationSchema)('XYPlotRenderer', {}, {
|
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baseConfiguration: _configSchema
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|
+
baseConfiguration: _configSchema.default,
|
|
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|
explicitlyTyped: true
|
|
33
33
|
});
|
|
34
34
|
exports.configSchema = configSchema;
|
package/dist/configSchema.js
CHANGED
|
@@ -3,7 +3,7 @@
|
|
|
3
3
|
Object.defineProperty(exports, "__esModule", {
|
|
4
4
|
value: true
|
|
5
5
|
});
|
|
6
|
-
exports
|
|
6
|
+
exports.default = void 0;
|
|
7
7
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|
|
8
8
|
var _configuration = require("@jbrowse/core/configuration");
|
|
9
9
|
|
|
@@ -72,4 +72,4 @@ var _default = (0, _configuration.ConfigurationSchema)('WiggleRenderer', {
|
|
|
72
72
|
explicitlyTyped: true
|
|
73
73
|
});
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|
|
|
75
|
-
exports
|
|
75
|
+
exports.default = _default;
|
package/dist/index.d.ts
CHANGED
|
@@ -169,7 +169,7 @@ export default class WigglePlugin extends Plugin {
|
|
|
169
169
|
headers?: Record<string, string> | undefined;
|
|
170
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signal?: AbortSignal | undefined;
|
|
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filters?: string[] | undefined;
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}): Promise<
|
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|
+
}): Promise<{}>;
|
|
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173
|
setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
|
|
174
174
|
setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
|
|
175
175
|
clearRegionStats(): void;
|
|
@@ -440,7 +440,7 @@ export default class WigglePlugin extends Plugin {
|
|
|
440
440
|
headers?: Record<string, string> | undefined;
|
|
441
441
|
signal?: AbortSignal | undefined;
|
|
442
442
|
filters?: string[] | undefined;
|
|
443
|
-
}): Promise<
|
|
443
|
+
}): Promise<{}>;
|
|
444
444
|
setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
|
|
445
445
|
setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
|
|
446
446
|
clearRegionStats(): void;
|
|
@@ -735,7 +735,7 @@ export default class WigglePlugin extends Plugin {
|
|
|
735
735
|
headers?: Record<string, string> | undefined;
|
|
736
736
|
signal?: AbortSignal | undefined;
|
|
737
737
|
filters?: string[] | undefined;
|
|
738
|
-
}): Promise<
|
|
738
|
+
}): Promise<{}>;
|
|
739
739
|
setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
|
|
740
740
|
setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
|
|
741
741
|
clearRegionStats(): void;
|
package/dist/index.js
CHANGED
|
@@ -30,13 +30,13 @@ Object.defineProperty(exports, "Tooltip", {
|
|
|
30
30
|
Object.defineProperty(exports, "WiggleBaseRenderer", {
|
|
31
31
|
enumerable: true,
|
|
32
32
|
get: function get() {
|
|
33
|
-
return _WiggleBaseRenderer
|
|
33
|
+
return _WiggleBaseRenderer.default;
|
|
34
34
|
}
|
|
35
35
|
});
|
|
36
36
|
Object.defineProperty(exports, "WiggleRendering", {
|
|
37
37
|
enumerable: true,
|
|
38
38
|
get: function get() {
|
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return _WiggleRendering
|
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+
return _WiggleRendering.default;
|
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}
|
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});
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Object.defineProperty(exports, "YSCALEBAR_LABEL_OFFSET", {
|
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@@ -45,7 +45,7 @@ Object.defineProperty(exports, "YSCALEBAR_LABEL_OFFSET", {
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return _LinearWiggleDisplay.YSCALEBAR_LABEL_OFFSET;
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}
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});
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exports
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exports.default = void 0;
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Object.defineProperty(exports, "linearWiggleDisplayModelFactory", {
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enumerable: true,
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get: function get() {
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@@ -115,48 +115,48 @@ var _Tooltip = require("./LinearWiggleDisplay/components/Tooltip");
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function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return {
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function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2
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function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
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function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
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var WigglePlugin = /*#__PURE__*/function (_Plugin) {
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(0, _inherits2
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(0, _inherits2.default)(WigglePlugin, _Plugin);
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var _super = _createSuper(WigglePlugin);
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function WigglePlugin() {
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var _this;
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(0, _classCallCheck2
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+
(0, _classCallCheck2.default)(this, WigglePlugin);
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|
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for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
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args[_key] = arguments[_key];
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|
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}
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_this = _super.call.apply(_super, [this].concat(args));
|
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|
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(0, _defineProperty2
|
|
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(0, _defineProperty2
|
|
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|
+
(0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'WigglePlugin');
|
|
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|
+
(0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "exports", {
|
|
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LinearWiggleDisplayReactComponent: _LinearWiggleDisplay.ReactComponent,
|
|
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142
|
XYPlotRendererReactComponent: _XYPlotRenderer.ReactComponent,
|
|
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|
-
XYPlotRenderer: _XYPlotRenderer
|
|
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|
+
XYPlotRenderer: _XYPlotRenderer.default,
|
|
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|
xyPlotRendererConfigSchema: _XYPlotRenderer.configSchema,
|
|
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|
utils: utils,
|
|
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-
WiggleBaseRenderer: _WiggleBaseRenderer
|
|
146
|
+
WiggleBaseRenderer: _WiggleBaseRenderer.default,
|
|
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|
linearWiggleDisplayModelFactory: _LinearWiggleDisplay.modelFactory
|
|
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|
});
|
|
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|
return _this;
|
|
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|
}
|
|
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|
|
|
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|
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(0, _createClass2
|
|
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|
+
(0, _createClass2.default)(WigglePlugin, [{
|
|
153
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|
key: "install",
|
|
154
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|
value: function install(pluginManager) {
|
|
155
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|
pluginManager.addTrackType(function () {
|
|
156
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|
var configSchema = (0, _configuration.ConfigurationSchema)('QuantitativeTrack', {}, {
|
|
157
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|
baseConfiguration: (0, _models.createBaseTrackConfig)(pluginManager)
|
|
158
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|
});
|
|
159
|
-
return new _TrackType
|
|
159
|
+
return new _TrackType.default({
|
|
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|
name: 'QuantitativeTrack',
|
|
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|
configSchema: configSchema,
|
|
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|
stateModel: (0, _models.createBaseTrackModel)(pluginManager, 'QuantitativeTrack', configSchema)
|
|
@@ -164,7 +164,7 @@ var WigglePlugin = /*#__PURE__*/function (_Plugin) {
|
|
|
164
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|
});
|
|
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|
pluginManager.addDisplayType(function () {
|
|
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|
var configSchema = (0, _LinearWiggleDisplay.configSchemaFactory)(pluginManager);
|
|
167
|
-
return new _DisplayType
|
|
167
|
+
return new _DisplayType.default({
|
|
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|
name: 'LinearWiggleDisplay',
|
|
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|
configSchema: configSchema,
|
|
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|
stateModel: (0, _LinearWiggleDisplay.modelFactory)(pluginManager, configSchema),
|
|
@@ -174,7 +174,7 @@ var WigglePlugin = /*#__PURE__*/function (_Plugin) {
|
|
|
174
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|
});
|
|
175
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|
});
|
|
176
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|
pluginManager.addAdapterType(function () {
|
|
177
|
-
return new _AdapterType
|
|
177
|
+
return new _AdapterType.default({
|
|
178
178
|
name: 'BigWigAdapter',
|
|
179
179
|
configSchema: _BigWigAdapter.configSchema,
|
|
180
180
|
adapterCapabilities: ['hasResolution', 'hasLocalStats', 'hasGlobalStats'],
|
|
@@ -182,7 +182,7 @@ var WigglePlugin = /*#__PURE__*/function (_Plugin) {
|
|
|
182
182
|
return Promise.resolve().then(function () {
|
|
183
183
|
return _interopRequireWildcard(require('./BigWigAdapter/BigWigAdapter'));
|
|
184
184
|
}).then(function (r) {
|
|
185
|
-
return r
|
|
185
|
+
return r.default;
|
|
186
186
|
});
|
|
187
187
|
}
|
|
188
188
|
});
|
|
@@ -216,7 +216,7 @@ var WigglePlugin = /*#__PURE__*/function (_Plugin) {
|
|
|
216
216
|
};
|
|
217
217
|
});
|
|
218
218
|
pluginManager.addRendererType(function () {
|
|
219
|
-
return new _DensityRenderer
|
|
219
|
+
return new _DensityRenderer.default({
|
|
220
220
|
name: 'DensityRenderer',
|
|
221
221
|
ReactComponent: _DensityRenderer.ReactComponent,
|
|
222
222
|
configSchema: _DensityRenderer.configSchema,
|
|
@@ -224,7 +224,7 @@ var WigglePlugin = /*#__PURE__*/function (_Plugin) {
|
|
|
224
224
|
});
|
|
225
225
|
});
|
|
226
226
|
pluginManager.addRendererType(function () {
|
|
227
|
-
return new _LinePlotRenderer
|
|
227
|
+
return new _LinePlotRenderer.default({
|
|
228
228
|
name: 'LinePlotRenderer',
|
|
229
229
|
ReactComponent: _LinePlotRenderer.ReactComponent,
|
|
230
230
|
configSchema: _LinePlotRenderer.configSchema,
|
|
@@ -232,7 +232,7 @@ var WigglePlugin = /*#__PURE__*/function (_Plugin) {
|
|
|
232
232
|
});
|
|
233
233
|
});
|
|
234
234
|
pluginManager.addRendererType(function () {
|
|
235
|
-
return new _XYPlotRenderer
|
|
235
|
+
return new _XYPlotRenderer.default({
|
|
236
236
|
name: 'XYPlotRenderer',
|
|
237
237
|
ReactComponent: _XYPlotRenderer.ReactComponent,
|
|
238
238
|
configSchema: _XYPlotRenderer.configSchema,
|
|
@@ -248,6 +248,6 @@ var WigglePlugin = /*#__PURE__*/function (_Plugin) {
|
|
|
248
248
|
}
|
|
249
249
|
}]);
|
|
250
250
|
return WigglePlugin;
|
|
251
|
-
}(_Plugin2
|
|
251
|
+
}(_Plugin2.default);
|
|
252
252
|
|
|
253
|
-
exports
|
|
253
|
+
exports.default = WigglePlugin;
|
package/dist/index.test.js
CHANGED
|
@@ -10,11 +10,11 @@ var _ = _interopRequireDefault(require("."));
|
|
|
10
10
|
|
|
11
11
|
test('plugin in a stock JBrowse', function () {
|
|
12
12
|
console.warn = jest.fn();
|
|
13
|
-
var pluginManager = new _PluginManager
|
|
13
|
+
var pluginManager = new _PluginManager.default([new _.default()]);
|
|
14
14
|
pluginManager.createPluggableElements();
|
|
15
15
|
pluginManager.configure();
|
|
16
16
|
expect(function () {
|
|
17
|
-
return pluginManager.addPlugin(new _
|
|
17
|
+
return pluginManager.addPlugin(new _.default());
|
|
18
18
|
}).toThrow(/JBrowse already configured, cannot add plugins/);
|
|
19
19
|
var BigWigAdapter = pluginManager.getAdapterType('BigWigAdapter');
|
|
20
20
|
var config = BigWigAdapter.configSchema.create({
|