@jbrowse/plugin-wiggle 1.7.1 → 1.7.5

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Files changed (31) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.js +22 -22
  2. package/dist/BigWigAdapter/BigWigAdapter.test.js +9 -9
  3. package/dist/BigWigAdapter/configSchema.js +2 -2
  4. package/dist/BigWigAdapter/index.js +1 -1
  5. package/dist/DensityRenderer/DensityRenderer.test.js +6 -6
  6. package/dist/DensityRenderer/index.js +13 -13
  7. package/dist/LinePlotRenderer/LinePlotRenderer.js +12 -12
  8. package/dist/LinePlotRenderer/configSchema.js +2 -2
  9. package/dist/LinePlotRenderer/index.js +3 -3
  10. package/dist/LinearWiggleDisplay/components/SetColorDialog.js +14 -14
  11. package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js +13 -13
  12. package/dist/LinearWiggleDisplay/components/Tooltip.js +14 -14
  13. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +5 -5
  14. package/dist/LinearWiggleDisplay/components/YScaleBar.js +3 -3
  15. package/dist/LinearWiggleDisplay/index.js +4 -4
  16. package/dist/LinearWiggleDisplay/models/configSchema.js +1 -1
  17. package/dist/LinearWiggleDisplay/models/model.d.ts +1 -1
  18. package/dist/LinearWiggleDisplay/models/model.js +27 -27
  19. package/dist/WiggleBaseRenderer.js +13 -13
  20. package/dist/WiggleRPC/rpcMethods.js +27 -27
  21. package/dist/WiggleRendering.js +7 -7
  22. package/dist/WiggleRendering.test.js +3 -3
  23. package/dist/XYPlotRenderer/XYPlotRenderer.js +15 -15
  24. package/dist/XYPlotRenderer/XYPlotRenderer.test.js +6 -6
  25. package/dist/XYPlotRenderer/index.js +3 -3
  26. package/dist/configSchema.js +2 -2
  27. package/dist/index.d.ts +3 -3
  28. package/dist/index.js +21 -21
  29. package/dist/index.test.js +2 -2
  30. package/dist/util.js +4 -4
  31. package/package.json +4 -5
@@ -7,7 +7,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports["default"] = SetMinMaxDlg;
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+ exports.default = SetMinMaxDlg;
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  var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
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@@ -33,7 +33,7 @@ var _Close = _interopRequireDefault(require("@material-ui/icons/Close"));
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  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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  var useStyles = (0, _styles.makeStyles)(function (theme) {
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  return {
@@ -56,46 +56,46 @@ function SetMinMaxDlg(props) {
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  scaleType = model.scaleType;
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  var _useState = (0, _react.useState)("".concat(minScore !== Number.MIN_VALUE ? minScore : '')),
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- _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
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+ _useState2 = (0, _slicedToArray2.default)(_useState, 2),
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  min = _useState2[0],
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  setMin = _useState2[1];
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  var _useState3 = (0, _react.useState)("".concat(maxScore !== Number.MAX_VALUE ? maxScore : '')),
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- _useState4 = (0, _slicedToArray2["default"])(_useState3, 2),
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+ _useState4 = (0, _slicedToArray2.default)(_useState3, 2),
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  max = _useState4[0],
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  setMax = _useState4[1];
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  var ok = min !== '' && max !== '' && !Number.isNaN(+min) && !Number.isNaN(+max) ? +max > +min : true;
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  var logOk = scaleType === 'log' && min !== '' && !Number.isNaN(+min) ? +min > 0 : true;
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- return /*#__PURE__*/_react["default"].createElement(_Dialog["default"], {
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+ return /*#__PURE__*/_react.default.createElement(_Dialog.default, {
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  open: true,
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  onClose: handleClose
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- }, /*#__PURE__*/_react["default"].createElement(_DialogTitle["default"], null, "Set min/max score for track", /*#__PURE__*/_react["default"].createElement(_IconButton["default"], {
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+ }, /*#__PURE__*/_react.default.createElement(_DialogTitle.default, null, "Set min/max score for track", /*#__PURE__*/_react.default.createElement(_IconButton.default, {
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  className: classes.closeButton,
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  onClick: handleClose
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- }, /*#__PURE__*/_react["default"].createElement(_Close["default"], null))), /*#__PURE__*/_react["default"].createElement(_DialogContent["default"], {
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+ }, /*#__PURE__*/_react.default.createElement(_Close.default, null))), /*#__PURE__*/_react.default.createElement(_DialogContent.default, {
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  style: {
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  overflowX: 'hidden'
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  }
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- }, /*#__PURE__*/_react["default"].createElement("div", {
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+ }, /*#__PURE__*/_react.default.createElement("div", {
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  className: classes.root
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- }, /*#__PURE__*/_react["default"].createElement(_Typography["default"], null, "Enter min/max score: "), !ok ? /*#__PURE__*/_react["default"].createElement(_Typography["default"], {
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+ }, /*#__PURE__*/_react.default.createElement(_Typography.default, null, "Enter min/max score: "), !ok ? /*#__PURE__*/_react.default.createElement(_Typography.default, {
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  color: "error"
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- }, "Max is greater than or equal to min") : null, !logOk ? /*#__PURE__*/_react["default"].createElement(_Typography["default"], {
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+ }, "Max is greater than or equal to min") : null, !logOk ? /*#__PURE__*/_react.default.createElement(_Typography.default, {
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  color: "error"
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- }, "Min score should be greater than 0 for log scale") : null, /*#__PURE__*/_react["default"].createElement(_TextField["default"], {
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+ }, "Min score should be greater than 0 for log scale") : null, /*#__PURE__*/_react.default.createElement(_TextField.default, {
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  value: min,
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  onChange: function onChange(event) {
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  setMin(event.target.value);
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  },
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  placeholder: "Enter min score"
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- }), /*#__PURE__*/_react["default"].createElement(_TextField["default"], {
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+ }), /*#__PURE__*/_react.default.createElement(_TextField.default, {
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  value: max,
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  onChange: function onChange(event) {
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  setMax(event.target.value);
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  },
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  placeholder: "Enter max score"
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- }), /*#__PURE__*/_react["default"].createElement(_Button["default"], {
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+ }), /*#__PURE__*/_react.default.createElement(_Button.default, {
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  variant: "contained",
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  color: "primary",
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  type: "submit",
@@ -7,7 +7,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports["default"] = exports.Tooltip = void 0;
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+ exports.default = exports.Tooltip = void 0;
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  var _extends2 = _interopRequireDefault(require("@babel/runtime/helpers/extends"));
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@@ -27,11 +27,11 @@ var _reactPopper = require("react-popper");
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  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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  function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
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- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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+ function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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  // convert to number, apply shortened precision, and render
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  function toP() {
@@ -77,7 +77,7 @@ var useStyles = (0, _core.makeStyles)(function (theme) {
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  };
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  });
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- var TooltipContents = /*#__PURE__*/_react["default"].forwardRef(function (_ref, ref) {
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+ var TooltipContents = /*#__PURE__*/_react.default.forwardRef(function (_ref, ref) {
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  var feature = _ref.feature;
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  var start = feature.get('start');
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  var end = feature.get('end');
@@ -85,11 +85,11 @@ var TooltipContents = /*#__PURE__*/_react["default"].forwardRef(function (_ref,
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  var loc = [name, start === end ? en(start) : "".concat(en(start), "..").concat(en(end))].filter(function (f) {
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  return !!f;
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  }).join(':');
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- return feature.get('summary') !== undefined ? /*#__PURE__*/_react["default"].createElement("div", {
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+ return feature.get('summary') !== undefined ? /*#__PURE__*/_react.default.createElement("div", {
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  ref: ref
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- }, loc, /*#__PURE__*/_react["default"].createElement("br", null), "Max: ", toP(feature.get('maxScore')), /*#__PURE__*/_react["default"].createElement("br", null), "Avg: ", toP(feature.get('score')), /*#__PURE__*/_react["default"].createElement("br", null), "Min: ", toP(feature.get('minScore'))) : /*#__PURE__*/_react["default"].createElement("div", {
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+ }, loc, /*#__PURE__*/_react.default.createElement("br", null), "Max: ", toP(feature.get('maxScore')), /*#__PURE__*/_react.default.createElement("br", null), "Avg: ", toP(feature.get('score')), /*#__PURE__*/_react.default.createElement("br", null), "Min: ", toP(feature.get('minScore'))) : /*#__PURE__*/_react.default.createElement("div", {
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  ref: ref
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- }, loc, /*#__PURE__*/_react["default"].createElement("br", null), "".concat(toP(feature.get('score'))));
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+ }, loc, /*#__PURE__*/_react.default.createElement("br", null), "".concat(toP(feature.get('score'))));
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  });
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  var Tooltip = (0, _mobxReact.observer)(function (_ref2) {
@@ -102,12 +102,12 @@ var Tooltip = (0, _mobxReact.observer)(function (_ref2) {
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  var featureUnderMouse = model.featureUnderMouse;
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  var _useState = (0, _react.useState)(0),
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- _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
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+ _useState2 = (0, _slicedToArray2.default)(_useState, 2),
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  width = _useState2[0],
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  setWidth = _useState2[1];
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  var _useState3 = (0, _react.useState)(null),
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- _useState4 = (0, _slicedToArray2["default"])(_useState3, 2),
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+ _useState4 = (0, _slicedToArray2.default)(_useState3, 2),
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  anchorEl = _useState4[0],
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  setAnchorEl = _useState4[1];
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@@ -137,19 +137,19 @@ var Tooltip = (0, _mobxReact.observer)(function (_ref2) {
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  styles = _usePopper.styles,
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  attributes = _usePopper.attributes;
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- return featureUnderMouse ? /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, /*#__PURE__*/_react["default"].createElement(_core.Portal, null, /*#__PURE__*/_react["default"].createElement("div", (0, _extends2["default"])({
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+ return featureUnderMouse ? /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_core.Portal, null, /*#__PURE__*/_react.default.createElement("div", (0, _extends2.default)({
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  ref: setAnchorEl,
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  className: classes.tooltip // zIndex needed to go over widget drawer
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  ,
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  style: _objectSpread(_objectSpread({}, styles.popper), {}, {
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  zIndex: 100000
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  })
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- }, attributes.popper), /*#__PURE__*/_react["default"].createElement(TooltipContents, {
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+ }, attributes.popper), /*#__PURE__*/_react.default.createElement(TooltipContents, {
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  ref: function ref(elt) {
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  setWidth((elt === null || elt === void 0 ? void 0 : elt.getBoundingClientRect().width) || 0);
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  },
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  feature: featureUnderMouse
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- }))), /*#__PURE__*/_react["default"].createElement("div", {
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+ }))), /*#__PURE__*/_react.default.createElement("div", {
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  className: classes.hoverVertical,
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  style: {
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  left: offsetMouseCoord[0],
@@ -159,9 +159,9 @@ var Tooltip = (0, _mobxReact.observer)(function (_ref2) {
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  });
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  exports.Tooltip = Tooltip;
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  var WiggleTooltip = (0, _mobxReact.observer)(function (props) {
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- return /*#__PURE__*/_react["default"].createElement(Tooltip, (0, _extends2["default"])({
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+ return /*#__PURE__*/_react.default.createElement(Tooltip, (0, _extends2.default)({
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  TooltipContents: TooltipContents
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  }, props));
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  });
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  var _default = WiggleTooltip;
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- exports["default"] = _default;
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+ exports.default = _default;
@@ -8,10 +8,10 @@ Object.defineProperty(exports, "__esModule", {
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  Object.defineProperty(exports, "YScaleBar", {
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  enumerable: true,
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  get: function get() {
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- return _YScaleBar["default"];
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+ return _YScaleBar.default;
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  }
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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  var _react = _interopRequireDefault(require("react"));
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@@ -35,7 +35,7 @@ var LinearWiggleDisplay = (0, _mobxReact.observer)(function (props) {
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  trackLabels = _getContainingView.trackLabels;
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  var left = trackLabels === 'overlapping' ? (0, _util.measureText)((0, _configuration.getConf)((0, _util.getContainingTrack)(model), 'name'), 12.8) + 100 : 50;
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- return /*#__PURE__*/_react["default"].createElement("div", null, /*#__PURE__*/_react["default"].createElement(_pluginLinearGenomeView.BaseLinearDisplayComponent, props), stats && needsScalebar ? /*#__PURE__*/_react["default"].createElement("svg", {
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+ return /*#__PURE__*/_react.default.createElement("div", null, /*#__PURE__*/_react.default.createElement(_pluginLinearGenomeView.BaseLinearDisplayComponent, props), stats && needsScalebar ? /*#__PURE__*/_react.default.createElement("svg", {
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  style: {
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  position: 'absolute',
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  top: 0,
@@ -44,9 +44,9 @@ var LinearWiggleDisplay = (0, _mobxReact.observer)(function (props) {
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  height: height,
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  width: 50
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  }
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- }, /*#__PURE__*/_react["default"].createElement(_YScaleBar["default"], {
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+ }, /*#__PURE__*/_react.default.createElement(_YScaleBar.default, {
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  model: model
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  })) : null);
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  });
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  var _default = LinearWiggleDisplay;
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- exports["default"] = _default;
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+ exports.default = _default;
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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  var _extends2 = _interopRequireDefault(require("@babel/runtime/helpers/extends"));
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@@ -19,7 +19,7 @@ var YScaleBar = (0, _mobxReact.observer)(function (_ref) {
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  var model = _ref.model,
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  orientation = _ref.orientation;
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  var ticks = model.ticks;
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- return ticks ? /*#__PURE__*/_react["default"].createElement(_reactD3AxisMod.Axis, (0, _extends2["default"])({}, ticks, {
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+ return ticks ? /*#__PURE__*/_react.default.createElement(_reactD3AxisMod.Axis, (0, _extends2.default)({}, ticks, {
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  shadow: 2,
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  format: function format(n) {
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  return n;
@@ -30,4 +30,4 @@ var YScaleBar = (0, _mobxReact.observer)(function (_ref) {
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  })) : null;
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  });
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  var _default = YScaleBar;
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- exports["default"] = _default;
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+ exports.default = _default;
@@ -10,7 +10,7 @@ Object.defineProperty(exports, "__esModule", {
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  Object.defineProperty(exports, "ReactComponent", {
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  enumerable: true,
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  get: function get() {
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- return _WiggleDisplayComponent["default"];
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+ return _WiggleDisplayComponent.default;
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  }
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  });
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  Object.defineProperty(exports, "YSCALEBAR_LABEL_OFFSET", {
@@ -22,13 +22,13 @@ Object.defineProperty(exports, "YSCALEBAR_LABEL_OFFSET", {
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  Object.defineProperty(exports, "configSchemaFactory", {
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  enumerable: true,
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  get: function get() {
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- return _configSchema["default"];
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+ return _configSchema.default;
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  }
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  });
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  Object.defineProperty(exports, "modelFactory", {
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  enumerable: true,
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  get: function get() {
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- return _model["default"];
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+ return _model.default;
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  }
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  });
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@@ -40,4 +40,4 @@ var _WiggleDisplayComponent = _interopRequireDefault(require("./components/Wiggl
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  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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42
 
43
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
43
+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
@@ -3,7 +3,7 @@
3
3
  Object.defineProperty(exports, "__esModule", {
4
4
  value: true
5
5
  });
6
- exports["default"] = WiggleConfigFactory;
6
+ exports.default = WiggleConfigFactory;
7
7
 
8
8
  var _configuration = require("@jbrowse/core/configuration");
9
9
 
@@ -162,7 +162,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
162
162
  headers?: Record<string, string> | undefined;
163
163
  signal?: AbortSignal | undefined;
164
164
  filters?: string[] | undefined;
165
- }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
165
+ }): Promise<{}>;
166
166
  setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
167
167
  setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
168
168
  clearRegionStats(): void;
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = exports.YSCALEBAR_LABEL_OFFSET = void 0;
8
+ exports.default = exports.YSCALEBAR_LABEL_OFFSET = void 0;
9
9
 
10
10
  var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
11
11
 
@@ -43,11 +43,11 @@ var _WiggleDisplayComponent = require("../components/WiggleDisplayComponent");
43
43
 
44
44
  function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
45
45
 
46
- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
46
+ function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
47
47
 
48
48
  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
49
49
 
50
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || (0, _typeof2["default"])(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
50
+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || (0, _typeof2.default)(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
51
51
 
52
52
  var SetMinMaxDlg = /*#__PURE__*/(0, _react.lazy)(function () {
53
53
  return Promise.resolve().then(function () {
@@ -71,7 +71,7 @@ var stateModelFactory = function stateModelFactory(pluginManager, configSchema)
71
71
  configuration: (0, _configuration.ConfigurationReference)(configSchema),
72
72
  selectedRendering: _mobxStateTree.types.optional(_mobxStateTree.types.string, ''),
73
73
  resolution: _mobxStateTree.types.optional(_mobxStateTree.types.number, 1),
74
- fill: _mobxStateTree.types.maybe(_mobxStateTree.types["boolean"]),
74
+ fill: _mobxStateTree.types.maybe(_mobxStateTree.types.boolean),
75
75
  color: _mobxStateTree.types.maybe(_mobxStateTree.types.string),
76
76
  posColor: _mobxStateTree.types.maybe(_mobxStateTree.types.string),
77
77
  negColor: _mobxStateTree.types.maybe(_mobxStateTree.types.string),
@@ -79,12 +79,12 @@ var stateModelFactory = function stateModelFactory(pluginManager, configSchema)
79
79
  rendererTypeNameState: _mobxStateTree.types.maybe(_mobxStateTree.types.string),
80
80
  scale: _mobxStateTree.types.maybe(_mobxStateTree.types.string),
81
81
  autoscale: _mobxStateTree.types.maybe(_mobxStateTree.types.string),
82
- displayCrossHatches: _mobxStateTree.types.maybe(_mobxStateTree.types["boolean"]),
82
+ displayCrossHatches: _mobxStateTree.types.maybe(_mobxStateTree.types.boolean),
83
83
  constraints: _mobxStateTree.types.optional(_mobxStateTree.types.model({
84
84
  max: _mobxStateTree.types.maybe(_mobxStateTree.types.number),
85
85
  min: _mobxStateTree.types.maybe(_mobxStateTree.types.number)
86
86
  }), {})
87
- }))["volatile"](function () {
87
+ })).volatile(function () {
88
88
  return {
89
89
  statsReady: false,
90
90
  message: undefined,
@@ -178,7 +178,7 @@ var stateModelFactory = function stateModelFactory(pluginManager, configSchema)
178
178
  }).views(function (self) {
179
179
  return {
180
180
  get TooltipComponent() {
181
- return _Tooltip["default"];
181
+ return _Tooltip.default;
182
182
  },
183
183
 
184
184
  get adapterTypeName() {
@@ -355,7 +355,7 @@ var stateModelFactory = function stateModelFactory(pluginManager, configSchema)
355
355
  var superTrackMenuItems = self.trackMenuItems;
356
356
  return {
357
357
  trackMenuItems: function trackMenuItems() {
358
- return [].concat((0, _toConsumableArray2["default"])(superTrackMenuItems()), (0, _toConsumableArray2["default"])(self.hasResolution ? [{
358
+ return [].concat((0, _toConsumableArray2.default)(superTrackMenuItems()), (0, _toConsumableArray2.default)(self.hasResolution ? [{
359
359
  label: 'Resolution',
360
360
  subMenu: [{
361
361
  label: 'Finer resolution',
@@ -378,7 +378,7 @@ var stateModelFactory = function stateModelFactory(pluginManager, configSchema)
378
378
  }
379
379
  };
380
380
  })
381
- }] : []), (0, _toConsumableArray2["default"])(self.canHaveFill ? [{
381
+ }] : []), (0, _toConsumableArray2.default)(self.canHaveFill ? [{
382
382
  label: self.filled ? 'Turn off histogram fill' : 'Turn on histogram fill',
383
383
  onClick: function onClick() {
384
384
  self.setFill(!self.filled);
@@ -395,9 +395,9 @@ var stateModelFactory = function stateModelFactory(pluginManager, configSchema)
395
395
  onClick: function onClick() {
396
396
  self.toggleCrossHatches();
397
397
  }
398
- }], (0, _toConsumableArray2["default"])(Object.keys((0, _configuration.getConf)(self, 'renderers') || {}).length > 1 ? [{
398
+ }], (0, _toConsumableArray2.default)(Object.keys((0, _configuration.getConf)(self, 'renderers') || {}).length > 1 ? [{
399
399
  label: 'Renderer type',
400
- subMenu: (0, _toConsumableArray2["default"])(rendererTypes.keys()).map(function (key) {
400
+ subMenu: (0, _toConsumableArray2.default)(rendererTypes.keys()).map(function (key) {
401
401
  return {
402
402
  label: key,
403
403
  onClick: function onClick() {
@@ -407,8 +407,8 @@ var stateModelFactory = function stateModelFactory(pluginManager, configSchema)
407
407
  })
408
408
  }] : []), [{
409
409
  label: 'Autoscale type',
410
- subMenu: [['local', 'Local']].concat((0, _toConsumableArray2["default"])(self.hasGlobalStats ? [['global', 'Global'], ['globalsd', 'Global ± 3σ']] : []), [['localsd', 'Local ± 3σ']]).map(function (_ref2) {
411
- var _ref3 = (0, _slicedToArray2["default"])(_ref2, 2),
410
+ subMenu: [['local', 'Local']].concat((0, _toConsumableArray2.default)(self.hasGlobalStats ? [['global', 'Global'], ['globalsd', 'Global ± 3σ']] : []), [['localsd', 'Local ± 3σ']]).map(function (_ref2) {
411
+ var _ref3 = (0, _slicedToArray2.default)(_ref2, 2),
412
412
  val = _ref3[0],
413
413
  label = _ref3[1];
414
414
 
@@ -451,10 +451,10 @@ var stateModelFactory = function stateModelFactory(pluginManager, configSchema)
451
451
  }
452
452
 
453
453
  function _getStats() {
454
- _getStats = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee4(opts) {
454
+ _getStats = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4(opts) {
455
455
  var _getSession, rpcManager, nd, adapterConfig, autoscaleType, sessionId, params, results, scoreMin, scoreMean, scoreStdDev, _ref6, dynamicBlocks, bpPerPx, _results, _scoreMin, _scoreMean, _scoreStdDev;
456
456
 
457
- return _regenerator["default"].wrap(function _callee4$(_context4) {
457
+ return _regenerator.default.wrap(function _callee4$(_context4) {
458
458
  while (1) {
459
459
  switch (_context4.prev = _context4.next) {
460
460
  case 0:
@@ -546,9 +546,9 @@ var stateModelFactory = function stateModelFactory(pluginManager, configSchema)
546
546
  return {
547
547
  // re-runs stats and refresh whole display on reload
548
548
  reload: function reload() {
549
- return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
549
+ return (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
550
550
  var aborter, stats;
551
- return _regenerator["default"].wrap(function _callee$(_context) {
551
+ return _regenerator.default.wrap(function _callee$(_context) {
552
552
  while (1) {
553
553
  switch (_context.prev = _context.next) {
554
554
  case 0:
@@ -585,9 +585,9 @@ var stateModelFactory = function stateModelFactory(pluginManager, configSchema)
585
585
  }))();
586
586
  },
587
587
  afterAttach: function afterAttach() {
588
- (0, _mobxStateTree.addDisposer)(self, (0, _mobx.autorun)( /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
588
+ (0, _mobxStateTree.addDisposer)(self, (0, _mobx.autorun)( /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
589
589
  var aborter, view, wiggleStats;
590
- return _regenerator["default"].wrap(function _callee2$(_context2) {
590
+ return _regenerator.default.wrap(function _callee2$(_context2) {
591
591
  while (1) {
592
592
  switch (_context2.prev = _context2.next) {
593
593
  case 0:
@@ -655,10 +655,10 @@ var stateModelFactory = function stateModelFactory(pluginManager, configSchema)
655
655
  }));
656
656
  },
657
657
  renderSvg: function renderSvg(opts) {
658
- return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3() {
658
+ return (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3() {
659
659
  var needsScalebar, stats, _ref5, offsetPx;
660
660
 
661
- return _regenerator["default"].wrap(function _callee3$(_context3) {
661
+ return _regenerator.default.wrap(function _callee3$(_context3) {
662
662
  while (1) {
663
663
  switch (_context3.prev = _context3.next) {
664
664
  case 0:
@@ -670,9 +670,9 @@ var stateModelFactory = function stateModelFactory(pluginManager, configSchema)
670
670
  case 2:
671
671
  needsScalebar = self.needsScalebar, stats = self.stats;
672
672
  _ref5 = (0, _util.getContainingView)(self), offsetPx = _ref5.offsetPx;
673
- _context3.t0 = _react["default"];
674
- _context3.t1 = _react["default"].Fragment;
675
- _context3.t2 = _react["default"];
673
+ _context3.t0 = _react.default;
674
+ _context3.t1 = _react.default.Fragment;
675
+ _context3.t2 = _react.default;
676
676
  _context3.t3 = {
677
677
  id: "snpcov"
678
678
  };
@@ -682,9 +682,9 @@ var stateModelFactory = function stateModelFactory(pluginManager, configSchema)
682
682
  case 10:
683
683
  _context3.t4 = _context3.sent;
684
684
  _context3.t5 = _context3.t2.createElement.call(_context3.t2, "g", _context3.t3, _context3.t4);
685
- _context3.t6 = needsScalebar && stats ? /*#__PURE__*/_react["default"].createElement("g", {
685
+ _context3.t6 = needsScalebar && stats ? /*#__PURE__*/_react.default.createElement("g", {
686
686
  transform: "translate(".concat(Math.max(-offsetPx, 0), ")")
687
- }, /*#__PURE__*/_react["default"].createElement(_WiggleDisplayComponent.YScaleBar, {
687
+ }, /*#__PURE__*/_react.default.createElement(_WiggleDisplayComponent.YScaleBar, {
688
688
  model: self,
689
689
  orientation: "left"
690
690
  })) : null;
@@ -703,4 +703,4 @@ var stateModelFactory = function stateModelFactory(pluginManager, configSchema)
703
703
  };
704
704
 
705
705
  var _default = stateModelFactory;
706
- exports["default"] = _default;
706
+ exports.default = _default;
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = void 0;
8
+ exports.default = void 0;
9
9
 
10
10
  var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
11
11
 
@@ -35,40 +35,40 @@ var _offscreenCanvasUtils = require("@jbrowse/core/util/offscreenCanvasUtils");
35
35
 
36
36
  function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
37
37
 
38
- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
38
+ function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
39
39
 
40
- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
40
+ function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
41
41
 
42
42
  function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
43
43
 
44
44
  var WiggleBaseRenderer = /*#__PURE__*/function (_FeatureRendererType) {
45
- (0, _inherits2["default"])(WiggleBaseRenderer, _FeatureRendererType);
45
+ (0, _inherits2.default)(WiggleBaseRenderer, _FeatureRendererType);
46
46
 
47
47
  var _super = _createSuper(WiggleBaseRenderer);
48
48
 
49
49
  function WiggleBaseRenderer() {
50
50
  var _this;
51
51
 
52
- (0, _classCallCheck2["default"])(this, WiggleBaseRenderer);
52
+ (0, _classCallCheck2.default)(this, WiggleBaseRenderer);
53
53
 
54
54
  for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
55
55
  args[_key] = arguments[_key];
56
56
  }
57
57
 
58
58
  _this = _super.call.apply(_super, [this].concat(args));
59
- (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "supportsSVG", true);
59
+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "supportsSVG", true);
60
60
  return _this;
61
61
  }
62
62
 
63
- (0, _createClass2["default"])(WiggleBaseRenderer, [{
63
+ (0, _createClass2.default)(WiggleBaseRenderer, [{
64
64
  key: "render",
65
65
  value: function () {
66
- var _render = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(renderProps) {
66
+ var _render = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(renderProps) {
67
67
  var _this2 = this;
68
68
 
69
69
  var features, height, regions, bpPerPx, _regions, region, width, res, results;
70
70
 
71
- return _regenerator["default"].wrap(function _callee$(_context) {
71
+ return _regenerator.default.wrap(function _callee$(_context) {
72
72
  while (1) {
73
73
  switch (_context.prev = _context.next) {
74
74
  case 0:
@@ -78,7 +78,7 @@ var WiggleBaseRenderer = /*#__PURE__*/function (_FeatureRendererType) {
78
78
  case 2:
79
79
  features = _context.sent;
80
80
  height = renderProps.height, regions = renderProps.regions, bpPerPx = renderProps.bpPerPx;
81
- _regions = (0, _slicedToArray2["default"])(regions, 1), region = _regions[0];
81
+ _regions = (0, _slicedToArray2.default)(regions, 1), region = _regions[0];
82
82
  width = (region.end - region.start) / bpPerPx;
83
83
  _context.next = 8;
84
84
  return (0, _offscreenCanvasUtils.renderToAbstractCanvas)(width, height, renderProps, function (ctx) {
@@ -90,7 +90,7 @@ var WiggleBaseRenderer = /*#__PURE__*/function (_FeatureRendererType) {
90
90
  case 8:
91
91
  res = _context.sent;
92
92
  _context.next = 11;
93
- return (0, _get2["default"])((0, _getPrototypeOf2["default"])(WiggleBaseRenderer.prototype), "render", this).call(this, _objectSpread(_objectSpread(_objectSpread({}, renderProps), res), {}, {
93
+ return (0, _get2.default)((0, _getPrototypeOf2.default)(WiggleBaseRenderer.prototype), "render", this).call(this, _objectSpread(_objectSpread(_objectSpread({}, renderProps), res), {}, {
94
94
  features: features,
95
95
  height: height,
96
96
  width: width
@@ -126,6 +126,6 @@ var WiggleBaseRenderer = /*#__PURE__*/function (_FeatureRendererType) {
126
126
 
127
127
  }]);
128
128
  return WiggleBaseRenderer;
129
- }(_FeatureRendererType2["default"]);
129
+ }(_FeatureRendererType2.default);
130
130
 
131
- exports["default"] = WiggleBaseRenderer;
131
+ exports.default = WiggleBaseRenderer;