@jbrowse/plugin-wiggle 1.7.1 → 1.7.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/BigWigAdapter.js +22 -22
- package/dist/BigWigAdapter/BigWigAdapter.test.js +9 -9
- package/dist/BigWigAdapter/configSchema.js +2 -2
- package/dist/BigWigAdapter/index.js +1 -1
- package/dist/DensityRenderer/DensityRenderer.test.js +6 -6
- package/dist/DensityRenderer/index.js +13 -13
- package/dist/LinePlotRenderer/LinePlotRenderer.js +12 -12
- package/dist/LinePlotRenderer/configSchema.js +2 -2
- package/dist/LinePlotRenderer/index.js +3 -3
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js +14 -14
- package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js +13 -13
- package/dist/LinearWiggleDisplay/components/Tooltip.js +14 -14
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +5 -5
- package/dist/LinearWiggleDisplay/components/YScaleBar.js +3 -3
- package/dist/LinearWiggleDisplay/index.js +4 -4
- package/dist/LinearWiggleDisplay/models/configSchema.js +1 -1
- package/dist/LinearWiggleDisplay/models/model.d.ts +1 -1
- package/dist/LinearWiggleDisplay/models/model.js +27 -27
- package/dist/WiggleBaseRenderer.js +13 -13
- package/dist/WiggleRPC/rpcMethods.js +27 -27
- package/dist/WiggleRendering.js +7 -7
- package/dist/WiggleRendering.test.js +3 -3
- package/dist/XYPlotRenderer/XYPlotRenderer.js +15 -15
- package/dist/XYPlotRenderer/XYPlotRenderer.test.js +6 -6
- package/dist/XYPlotRenderer/index.js +3 -3
- package/dist/configSchema.js +2 -2
- package/dist/index.d.ts +3 -3
- package/dist/index.js +21 -21
- package/dist/index.test.js +2 -2
- package/dist/util.js +4 -4
- package/package.json +4 -5
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exports
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exports.default = SetMinMaxDlg;
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var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
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@@ -33,7 +33,7 @@ var _Close = _interopRequireDefault(require("@material-ui/icons/Close"));
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function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return {
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function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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var useStyles = (0, _styles.makeStyles)(function (theme) {
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return {
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@@ -56,46 +56,46 @@ function SetMinMaxDlg(props) {
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scaleType = model.scaleType;
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var _useState = (0, _react.useState)("".concat(minScore !== Number.MIN_VALUE ? minScore : '')),
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_useState2 = (0, _slicedToArray2
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_useState2 = (0, _slicedToArray2.default)(_useState, 2),
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min = _useState2[0],
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setMin = _useState2[1];
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var _useState3 = (0, _react.useState)("".concat(maxScore !== Number.MAX_VALUE ? maxScore : '')),
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_useState4 = (0, _slicedToArray2
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_useState4 = (0, _slicedToArray2.default)(_useState3, 2),
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max = _useState4[0],
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setMax = _useState4[1];
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var ok = min !== '' && max !== '' && !Number.isNaN(+min) && !Number.isNaN(+max) ? +max > +min : true;
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var logOk = scaleType === 'log' && min !== '' && !Number.isNaN(+min) ? +min > 0 : true;
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return /*#__PURE__*/_react
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return /*#__PURE__*/_react.default.createElement(_Dialog.default, {
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onClose: handleClose
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}, /*#__PURE__*/_react
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}, /*#__PURE__*/_react.default.createElement(_DialogTitle.default, null, "Set min/max score for track", /*#__PURE__*/_react.default.createElement(_IconButton.default, {
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className: classes.closeButton,
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onClick: handleClose
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}, /*#__PURE__*/_react
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}, /*#__PURE__*/_react.default.createElement(_Close.default, null))), /*#__PURE__*/_react.default.createElement(_DialogContent.default, {
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}, /*#__PURE__*/_react
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}, /*#__PURE__*/_react.default.createElement("div", {
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className: classes.root
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}, /*#__PURE__*/_react
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}, /*#__PURE__*/_react.default.createElement(_Typography.default, null, "Enter min/max score: "), !ok ? /*#__PURE__*/_react.default.createElement(_Typography.default, {
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}, "Max is greater than or equal to min") : null, !logOk ? /*#__PURE__*/_react
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}, "Max is greater than or equal to min") : null, !logOk ? /*#__PURE__*/_react.default.createElement(_Typography.default, {
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color: "error"
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}, "Min score should be greater than 0 for log scale") : null, /*#__PURE__*/_react
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}, "Min score should be greater than 0 for log scale") : null, /*#__PURE__*/_react.default.createElement(_TextField.default, {
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value: min,
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onChange: function onChange(event) {
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setMin(event.target.value);
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},
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placeholder: "Enter min score"
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}), /*#__PURE__*/_react
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}), /*#__PURE__*/_react.default.createElement(_TextField.default, {
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value: max,
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onChange: function onChange(event) {
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setMax(event.target.value);
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placeholder: "Enter max score"
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}), /*#__PURE__*/_react
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}), /*#__PURE__*/_react.default.createElement(_Button.default, {
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exports.default = exports.Tooltip = void 0;
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var _extends2 = _interopRequireDefault(require("@babel/runtime/helpers/extends"));
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function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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// convert to number, apply shortened precision, and render
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function toP() {
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};
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var TooltipContents = /*#__PURE__*/_react
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var TooltipContents = /*#__PURE__*/_react.default.forwardRef(function (_ref, ref) {
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var loc = [name, start === end ? en(start) : "".concat(en(start), "..").concat(en(end))].filter(function (f) {
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return !!f;
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return feature.get('summary') !== undefined ? /*#__PURE__*/_react
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}, loc, /*#__PURE__*/_react
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}, loc, /*#__PURE__*/_react.default.createElement("br", null), "Max: ", toP(feature.get('maxScore')), /*#__PURE__*/_react.default.createElement("br", null), "Avg: ", toP(feature.get('score')), /*#__PURE__*/_react.default.createElement("br", null), "Min: ", toP(feature.get('minScore'))) : /*#__PURE__*/_react.default.createElement("div", {
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}, loc, /*#__PURE__*/_react.default.createElement("br", null), "".concat(toP(feature.get('score'))));
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var Tooltip = (0, _mobxReact.observer)(function (_ref2) {
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_useState2 = (0, _slicedToArray2
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_useState2 = (0, _slicedToArray2.default)(_useState, 2),
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var _useState3 = (0, _react.useState)(null),
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_useState4 = (0, _slicedToArray2
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_useState4 = (0, _slicedToArray2.default)(_useState3, 2),
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anchorEl = _useState4[0],
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return featureUnderMouse ? /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_core.Portal, null, /*#__PURE__*/_react.default.createElement("div", (0, _extends2.default)({
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className: classes.tooltip // zIndex needed to go over widget drawer
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,
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style: _objectSpread(_objectSpread({}, styles.popper), {}, {
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}, attributes.popper), /*#__PURE__*/_react
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}, attributes.popper), /*#__PURE__*/_react.default.createElement(TooltipContents, {
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}))), /*#__PURE__*/_react
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}))), /*#__PURE__*/_react.default.createElement("div", {
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exports.Tooltip = Tooltip;
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return /*#__PURE__*/_react.default.createElement(Tooltip, (0, _extends2.default)({
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var _default = WiggleTooltip;
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return /*#__PURE__*/_react.default.createElement("div", null, /*#__PURE__*/_react.default.createElement(_pluginLinearGenomeView.BaseLinearDisplayComponent, props), stats && needsScalebar ? /*#__PURE__*/_react.default.createElement("svg", {
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}, /*#__PURE__*/_react.default.createElement(_YScaleBar.default, {
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function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2
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function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
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function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
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var WiggleBaseRenderer = /*#__PURE__*/function (_FeatureRendererType) {
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(0, _inherits2.default)(WiggleBaseRenderer, _FeatureRendererType);
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var _super = _createSuper(WiggleBaseRenderer);
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function WiggleBaseRenderer() {
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var _this;
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(0, _classCallCheck2.default)(this, WiggleBaseRenderer);
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for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
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args[_key] = arguments[_key];
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}
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_this = _super.call.apply(_super, [this].concat(args));
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(0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "supportsSVG", true);
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return _this;
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}
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(0, _createClass2.default)(WiggleBaseRenderer, [{
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key: "render",
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value: function () {
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var _render = (0, _asyncToGenerator2
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var _render = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(renderProps) {
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var _this2 = this;
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var features, height, regions, bpPerPx, _regions, region, width, res, results;
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return _regenerator.default.wrap(function _callee$(_context) {
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while (1) {
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switch (_context.prev = _context.next) {
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case 0:
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case 2:
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features = _context.sent;
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height = renderProps.height, regions = renderProps.regions, bpPerPx = renderProps.bpPerPx;
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_regions = (0, _slicedToArray2
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_regions = (0, _slicedToArray2.default)(regions, 1), region = _regions[0];
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width = (region.end - region.start) / bpPerPx;
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_context.next = 8;
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return (0, _offscreenCanvasUtils.renderToAbstractCanvas)(width, height, renderProps, function (ctx) {
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res = _context.sent;
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_context.next = 11;
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return (0, _get2
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return (0, _get2.default)((0, _getPrototypeOf2.default)(WiggleBaseRenderer.prototype), "render", this).call(this, _objectSpread(_objectSpread(_objectSpread({}, renderProps), res), {}, {
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features: features,
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height: height,
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width: width
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}]);
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return WiggleBaseRenderer;
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}(_FeatureRendererType2
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}(_FeatureRendererType2.default);
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exports
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exports.default = WiggleBaseRenderer;
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