@jbrowse/plugin-wiggle 1.6.5 → 1.6.8
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/configSchema.d.ts +1 -1
- package/dist/DensityRenderer/index.d.ts +1 -1
- package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +1 -1
- package/dist/LinePlotRenderer/configSchema.d.ts +1 -1
- package/dist/LinePlotRenderer/index.d.ts +1 -1
- package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +2 -2
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -4
- package/dist/LinearWiggleDisplay/components/YScaleBar.d.ts +7 -0
- package/dist/LinearWiggleDisplay/models/configSchema.d.ts +1 -1
- package/dist/LinearWiggleDisplay/models/model.d.ts +4 -4
- package/dist/WiggleBaseRenderer.d.ts +1 -1
- package/dist/XYPlotRenderer/index.d.ts +1 -1
- package/dist/configSchema.d.ts +1 -1
- package/dist/index.d.ts +36 -36
- package/dist/plugin-wiggle.cjs.development.js +49 -69
- package/dist/plugin-wiggle.cjs.development.js.map +1 -1
- package/dist/plugin-wiggle.cjs.production.min.js +1 -1
- package/dist/plugin-wiggle.cjs.production.min.js.map +1 -1
- package/dist/plugin-wiggle.esm.js +51 -71
- package/dist/plugin-wiggle.esm.js.map +1 -1
- package/package.json +3 -3
- package/src/LinePlotRenderer/LinePlotRenderer.js +0 -5
- package/src/LinearWiggleDisplay/components/Tooltip.tsx +4 -4
- package/src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx +18 -23
- package/src/LinearWiggleDisplay/components/YScaleBar.tsx +26 -0
- package/src/LinearWiggleDisplay/models/configSchema.ts +5 -0
- package/src/LinearWiggleDisplay/models/model.tsx +26 -29
- package/src/WiggleBaseRenderer.tsx +2 -2
- package/src/WiggleRPC/rpcMethods.ts +2 -9
- package/src/XYPlotRenderer/XYPlotRenderer.ts +3 -7
- package/src/declare.d.ts +1 -1
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
declare const _default: import("@jbrowse/core/configuration
|
|
1
|
+
declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
2
2
|
export default _default;
|
|
@@ -3,4 +3,4 @@ export { default as ReactComponent } from '../WiggleRendering';
|
|
|
3
3
|
export default class DensityRenderer extends WiggleBaseRenderer {
|
|
4
4
|
draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): void;
|
|
5
5
|
}
|
|
6
|
-
export declare const configSchema: import("@jbrowse/core/configuration
|
|
6
|
+
export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
@@ -2,7 +2,7 @@ export default class LinePlotRenderer extends WiggleBaseRenderer {
|
|
|
2
2
|
constructor(stuff: {
|
|
3
3
|
name: string;
|
|
4
4
|
ReactComponent: import("react").ComponentType<any>;
|
|
5
|
-
configSchema: import("@jbrowse/core/configuration
|
|
5
|
+
configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
6
6
|
pluginManager: import("@jbrowse/core/PluginManager").default;
|
|
7
7
|
});
|
|
8
8
|
}
|
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
declare var _default: import("@jbrowse/core/configuration
|
|
1
|
+
declare var _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
2
2
|
export default _default;
|
|
@@ -1,3 +1,3 @@
|
|
|
1
1
|
export { default as ReactComponent } from "../WiggleRendering";
|
|
2
2
|
export { default } from "./LinePlotRenderer";
|
|
3
|
-
export const configSchema: import("@jbrowse/core/configuration
|
|
3
|
+
export const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
@@ -8,7 +8,7 @@ declare const Tooltip: ({ model, height, clientMouseCoord, offsetMouseCoord, cli
|
|
|
8
8
|
height: number;
|
|
9
9
|
clientMouseCoord: Coord;
|
|
10
10
|
offsetMouseCoord: Coord;
|
|
11
|
-
clientRect?:
|
|
11
|
+
clientRect?: DOMRect | undefined;
|
|
12
12
|
TooltipContents: React.FC<any>;
|
|
13
13
|
}) => JSX.Element | null;
|
|
14
14
|
declare const WiggleTooltip: (props: {
|
|
@@ -18,7 +18,7 @@ declare const WiggleTooltip: (props: {
|
|
|
18
18
|
height: number;
|
|
19
19
|
offsetMouseCoord: Coord;
|
|
20
20
|
clientMouseCoord: Coord;
|
|
21
|
-
clientRect?:
|
|
21
|
+
clientRect?: DOMRect;
|
|
22
22
|
}) => JSX.Element;
|
|
23
23
|
export default WiggleTooltip;
|
|
24
24
|
export { Tooltip };
|
|
@@ -1,10 +1,8 @@
|
|
|
1
1
|
/// <reference types="react" />
|
|
2
2
|
import { WiggleDisplayModel } from '../models/model';
|
|
3
|
-
|
|
4
|
-
model: WiggleDisplayModel;
|
|
5
|
-
orientation?: string | undefined;
|
|
6
|
-
}) => JSX.Element;
|
|
3
|
+
import YScaleBar from './YScaleBar';
|
|
7
4
|
declare const LinearWiggleDisplay: (props: {
|
|
8
5
|
model: WiggleDisplayModel;
|
|
9
6
|
}) => JSX.Element;
|
|
10
7
|
export default LinearWiggleDisplay;
|
|
8
|
+
export { YScaleBar };
|
|
@@ -1,2 +1,2 @@
|
|
|
1
1
|
import PluginManager from '@jbrowse/core/PluginManager';
|
|
2
|
-
export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration
|
|
2
|
+
export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
import React from 'react';
|
|
2
|
+
import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
|
|
2
3
|
import { Instance } from 'mobx-state-tree';
|
|
3
4
|
import PluginManager from '@jbrowse/core/PluginManager';
|
|
4
|
-
import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration/configurationSchema';
|
|
5
5
|
import { Feature } from '@jbrowse/core/util/simpleFeature';
|
|
6
6
|
export declare const YSCALEBAR_LABEL_OFFSET = 5;
|
|
7
7
|
declare const stateModelFactory: (pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
|
|
@@ -204,10 +204,10 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
|
|
|
204
204
|
stats: {
|
|
205
205
|
scoreMin: number;
|
|
206
206
|
scoreMax: number;
|
|
207
|
-
}
|
|
207
|
+
};
|
|
208
208
|
statsFetchInProgress: AbortController | undefined;
|
|
209
209
|
} & {
|
|
210
|
-
updateStats(
|
|
210
|
+
updateStats({ scoreMin, scoreMax, }: {
|
|
211
211
|
scoreMin: number;
|
|
212
212
|
scoreMax: number;
|
|
213
213
|
}): void;
|
|
@@ -247,7 +247,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
|
|
|
247
247
|
stats: {
|
|
248
248
|
scoreMin: number;
|
|
249
249
|
scoreMax: number;
|
|
250
|
-
}
|
|
250
|
+
};
|
|
251
251
|
autoscaleType: any;
|
|
252
252
|
scaleType: any;
|
|
253
253
|
inverted: any;
|
|
@@ -38,5 +38,5 @@ export default abstract class WiggleBaseRenderer extends FeatureRendererType {
|
|
|
38
38
|
reactElement?: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
|
|
39
39
|
html?: string | undefined;
|
|
40
40
|
}>;
|
|
41
|
-
abstract draw(ctx: CanvasRenderingContext2D, props:
|
|
41
|
+
abstract draw<T extends RenderArgsDeserializedWithFeatures>(ctx: CanvasRenderingContext2D, props: T): void;
|
|
42
42
|
}
|
|
@@ -1,3 +1,3 @@
|
|
|
1
1
|
export { default as ReactComponent } from '../WiggleRendering';
|
|
2
2
|
export { default } from './XYPlotRenderer';
|
|
3
|
-
export declare const configSchema: import("@jbrowse/core/configuration
|
|
3
|
+
export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
package/dist/configSchema.d.ts
CHANGED
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
declare const _default: import("@jbrowse/core/configuration
|
|
1
|
+
declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
2
2
|
export default _default;
|
package/dist/index.d.ts
CHANGED
|
@@ -36,7 +36,7 @@ export default class WigglePlugin extends Plugin {
|
|
|
36
36
|
renderInProgress: AbortController | undefined;
|
|
37
37
|
filled: boolean;
|
|
38
38
|
reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
|
|
39
|
-
features: Map<string, import("@jbrowse/core/util
|
|
39
|
+
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
|
40
40
|
layout: any;
|
|
41
41
|
status: string;
|
|
42
42
|
error: unknown;
|
|
@@ -54,7 +54,7 @@ export default class WigglePlugin extends Plugin {
|
|
|
54
54
|
setMessage(messageText: string): void;
|
|
55
55
|
setRendered(props: {
|
|
56
56
|
reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
|
|
57
|
-
features: Map<string, import("@jbrowse/core/util
|
|
57
|
+
features: Map<string, import("@jbrowse/core/util").Feature>;
|
|
58
58
|
layout: any;
|
|
59
59
|
maxHeightReached: boolean;
|
|
60
60
|
renderProps: any;
|
|
@@ -139,7 +139,7 @@ export default class WigglePlugin extends Plugin {
|
|
|
139
139
|
currBpPerPx: number;
|
|
140
140
|
message: string;
|
|
141
141
|
featureIdUnderMouse: string | undefined;
|
|
142
|
-
contextMenuFeature: import("@jbrowse/core/util
|
|
142
|
+
contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
|
|
143
143
|
scrollTop: number;
|
|
144
144
|
estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
|
|
145
145
|
estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
|
|
@@ -152,8 +152,8 @@ export default class WigglePlugin extends Plugin {
|
|
|
152
152
|
readonly selectedFeatureId: string | undefined;
|
|
153
153
|
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
154
154
|
} & {
|
|
155
|
-
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util
|
|
156
|
-
readonly featureUnderMouse: import("@jbrowse/core/util
|
|
155
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
|
156
|
+
readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
|
157
157
|
getFeatureOverlapping(blockKey: string, x: number, y: number): any;
|
|
158
158
|
getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
|
|
159
159
|
searchFeatureByID(id: string): [number, number, number, number] | undefined;
|
|
@@ -180,11 +180,11 @@ export default class WigglePlugin extends Plugin {
|
|
|
180
180
|
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
181
181
|
setCurrBpPerPx(n: number): void;
|
|
182
182
|
deleteBlock(key: string): void;
|
|
183
|
-
selectFeature(feature: import("@jbrowse/core/util
|
|
183
|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
184
184
|
clearFeatureSelection(): void;
|
|
185
185
|
setFeatureIdUnderMouse(feature: string | undefined): void;
|
|
186
186
|
reload(): void;
|
|
187
|
-
setContextMenuFeature(feature?: import("@jbrowse/core/util
|
|
187
|
+
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
|
|
188
188
|
} & {
|
|
189
189
|
readonly regionTooLarge: boolean;
|
|
190
190
|
readonly regionTooLargeReason: string;
|
|
@@ -211,10 +211,10 @@ export default class WigglePlugin extends Plugin {
|
|
|
211
211
|
stats: {
|
|
212
212
|
scoreMin: number;
|
|
213
213
|
scoreMax: number;
|
|
214
|
-
}
|
|
214
|
+
};
|
|
215
215
|
statsFetchInProgress: AbortController | undefined;
|
|
216
216
|
} & {
|
|
217
|
-
updateStats(
|
|
217
|
+
updateStats({ scoreMin, scoreMax, }: {
|
|
218
218
|
scoreMin: number;
|
|
219
219
|
scoreMax: number;
|
|
220
220
|
}): void;
|
|
@@ -222,7 +222,7 @@ export default class WigglePlugin extends Plugin {
|
|
|
222
222
|
setPosColor(color: string): void;
|
|
223
223
|
setNegColor(color: string): void;
|
|
224
224
|
setLoading(aborter: AbortController): void;
|
|
225
|
-
selectFeature(feature: import("@jbrowse/core/util
|
|
225
|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
226
226
|
setResolution(res: number): void;
|
|
227
227
|
setFill(fill: boolean): void;
|
|
228
228
|
toggleLogScale(): void;
|
|
@@ -254,7 +254,7 @@ export default class WigglePlugin extends Plugin {
|
|
|
254
254
|
stats: {
|
|
255
255
|
scoreMin: number;
|
|
256
256
|
scoreMax: number;
|
|
257
|
-
}
|
|
257
|
+
};
|
|
258
258
|
autoscaleType: any;
|
|
259
259
|
scaleType: any;
|
|
260
260
|
inverted: any;
|
|
@@ -307,7 +307,7 @@ export default class WigglePlugin extends Plugin {
|
|
|
307
307
|
renderInProgress: AbortController | undefined;
|
|
308
308
|
filled: boolean;
|
|
309
309
|
reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
|
|
310
|
-
features: Map<string, import("@jbrowse/core/util
|
|
310
|
+
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
|
311
311
|
layout: any;
|
|
312
312
|
status: string;
|
|
313
313
|
error: unknown;
|
|
@@ -325,7 +325,7 @@ export default class WigglePlugin extends Plugin {
|
|
|
325
325
|
setMessage(messageText: string): void;
|
|
326
326
|
setRendered(props: {
|
|
327
327
|
reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
|
|
328
|
-
features: Map<string, import("@jbrowse/core/util
|
|
328
|
+
features: Map<string, import("@jbrowse/core/util").Feature>;
|
|
329
329
|
layout: any;
|
|
330
330
|
maxHeightReached: boolean;
|
|
331
331
|
renderProps: any;
|
|
@@ -410,7 +410,7 @@ export default class WigglePlugin extends Plugin {
|
|
|
410
410
|
currBpPerPx: number;
|
|
411
411
|
message: string;
|
|
412
412
|
featureIdUnderMouse: string | undefined;
|
|
413
|
-
contextMenuFeature: import("@jbrowse/core/util
|
|
413
|
+
contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
|
|
414
414
|
scrollTop: number;
|
|
415
415
|
estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
|
|
416
416
|
estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
|
|
@@ -423,8 +423,8 @@ export default class WigglePlugin extends Plugin {
|
|
|
423
423
|
readonly selectedFeatureId: string | undefined;
|
|
424
424
|
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
425
425
|
} & {
|
|
426
|
-
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util
|
|
427
|
-
readonly featureUnderMouse: import("@jbrowse/core/util
|
|
426
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
|
427
|
+
readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
|
428
428
|
getFeatureOverlapping(blockKey: string, x: number, y: number): any;
|
|
429
429
|
getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
|
|
430
430
|
searchFeatureByID(id: string): [number, number, number, number] | undefined;
|
|
@@ -451,11 +451,11 @@ export default class WigglePlugin extends Plugin {
|
|
|
451
451
|
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
452
452
|
setCurrBpPerPx(n: number): void;
|
|
453
453
|
deleteBlock(key: string): void;
|
|
454
|
-
selectFeature(feature: import("@jbrowse/core/util
|
|
454
|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
455
455
|
clearFeatureSelection(): void;
|
|
456
456
|
setFeatureIdUnderMouse(feature: string | undefined): void;
|
|
457
457
|
reload(): void;
|
|
458
|
-
setContextMenuFeature(feature?: import("@jbrowse/core/util
|
|
458
|
+
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
|
|
459
459
|
} & {
|
|
460
460
|
readonly regionTooLarge: boolean;
|
|
461
461
|
readonly regionTooLargeReason: string;
|
|
@@ -482,10 +482,10 @@ export default class WigglePlugin extends Plugin {
|
|
|
482
482
|
stats: {
|
|
483
483
|
scoreMin: number;
|
|
484
484
|
scoreMax: number;
|
|
485
|
-
}
|
|
485
|
+
};
|
|
486
486
|
statsFetchInProgress: AbortController | undefined;
|
|
487
487
|
} & {
|
|
488
|
-
updateStats(
|
|
488
|
+
updateStats({ scoreMin, scoreMax, }: {
|
|
489
489
|
scoreMin: number;
|
|
490
490
|
scoreMax: number;
|
|
491
491
|
}): void;
|
|
@@ -493,7 +493,7 @@ export default class WigglePlugin extends Plugin {
|
|
|
493
493
|
setPosColor(color: string): void;
|
|
494
494
|
setNegColor(color: string): void;
|
|
495
495
|
setLoading(aborter: AbortController): void;
|
|
496
|
-
selectFeature(feature: import("@jbrowse/core/util
|
|
496
|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
497
497
|
setResolution(res: number): void;
|
|
498
498
|
setFill(fill: boolean): void;
|
|
499
499
|
toggleLogScale(): void;
|
|
@@ -525,7 +525,7 @@ export default class WigglePlugin extends Plugin {
|
|
|
525
525
|
stats: {
|
|
526
526
|
scoreMin: number;
|
|
527
527
|
scoreMax: number;
|
|
528
|
-
}
|
|
528
|
+
};
|
|
529
529
|
autoscaleType: any;
|
|
530
530
|
scaleType: any;
|
|
531
531
|
inverted: any;
|
|
@@ -564,7 +564,7 @@ export default class WigglePlugin extends Plugin {
|
|
|
564
564
|
}) => JSX.Element;
|
|
565
565
|
XYPlotRendererReactComponent: (props: {
|
|
566
566
|
regions: import("@jbrowse/core/util/types").Region[];
|
|
567
|
-
features: Map<string, import("@jbrowse/core/util
|
|
567
|
+
features: Map<string, import("@jbrowse/core/util").Feature>;
|
|
568
568
|
bpPerPx: number;
|
|
569
569
|
width: number;
|
|
570
570
|
height: number;
|
|
@@ -574,10 +574,10 @@ export default class WigglePlugin extends Plugin {
|
|
|
574
574
|
blockKey: string;
|
|
575
575
|
}) => JSX.Element;
|
|
576
576
|
XYPlotRenderer: typeof XYPlotRenderer;
|
|
577
|
-
xyPlotRendererConfigSchema: import("@jbrowse/core/configuration
|
|
577
|
+
xyPlotRendererConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
578
578
|
utils: typeof utils;
|
|
579
579
|
WiggleBaseRenderer: typeof WiggleBaseRenderer;
|
|
580
|
-
linearWiggleDisplayModelFactory: (pluginManager: PluginManager, configSchema: import("@jbrowse/core/configuration
|
|
580
|
+
linearWiggleDisplayModelFactory: (pluginManager: PluginManager, configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
|
|
581
581
|
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
582
582
|
type: import("mobx-state-tree").ISimpleType<string>;
|
|
583
583
|
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
@@ -602,7 +602,7 @@ export default class WigglePlugin extends Plugin {
|
|
|
602
602
|
renderInProgress: AbortController | undefined;
|
|
603
603
|
filled: boolean;
|
|
604
604
|
reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
|
|
605
|
-
features: Map<string, import("@jbrowse/core/util
|
|
605
|
+
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
|
606
606
|
layout: any;
|
|
607
607
|
status: string;
|
|
608
608
|
error: unknown;
|
|
@@ -620,7 +620,7 @@ export default class WigglePlugin extends Plugin {
|
|
|
620
620
|
setMessage(messageText: string): void;
|
|
621
621
|
setRendered(props: {
|
|
622
622
|
reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
|
|
623
|
-
features: Map<string, import("@jbrowse/core/util
|
|
623
|
+
features: Map<string, import("@jbrowse/core/util").Feature>;
|
|
624
624
|
layout: any;
|
|
625
625
|
maxHeightReached: boolean;
|
|
626
626
|
renderProps: any;
|
|
@@ -705,7 +705,7 @@ export default class WigglePlugin extends Plugin {
|
|
|
705
705
|
currBpPerPx: number;
|
|
706
706
|
message: string;
|
|
707
707
|
featureIdUnderMouse: string | undefined;
|
|
708
|
-
contextMenuFeature: import("@jbrowse/core/util
|
|
708
|
+
contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
|
|
709
709
|
scrollTop: number;
|
|
710
710
|
estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
|
|
711
711
|
estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
|
|
@@ -718,8 +718,8 @@ export default class WigglePlugin extends Plugin {
|
|
|
718
718
|
readonly selectedFeatureId: string | undefined;
|
|
719
719
|
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
720
720
|
} & {
|
|
721
|
-
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util
|
|
722
|
-
readonly featureUnderMouse: import("@jbrowse/core/util
|
|
721
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
|
722
|
+
readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
|
723
723
|
getFeatureOverlapping(blockKey: string, x: number, y: number): any;
|
|
724
724
|
getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
|
|
725
725
|
searchFeatureByID(id: string): [number, number, number, number] | undefined;
|
|
@@ -746,11 +746,11 @@ export default class WigglePlugin extends Plugin {
|
|
|
746
746
|
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
747
747
|
setCurrBpPerPx(n: number): void;
|
|
748
748
|
deleteBlock(key: string): void;
|
|
749
|
-
selectFeature(feature: import("@jbrowse/core/util
|
|
749
|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
750
750
|
clearFeatureSelection(): void;
|
|
751
751
|
setFeatureIdUnderMouse(feature: string | undefined): void;
|
|
752
752
|
reload(): void;
|
|
753
|
-
setContextMenuFeature(feature?: import("@jbrowse/core/util
|
|
753
|
+
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
|
|
754
754
|
} & {
|
|
755
755
|
readonly regionTooLarge: boolean;
|
|
756
756
|
readonly regionTooLargeReason: string;
|
|
@@ -777,10 +777,10 @@ export default class WigglePlugin extends Plugin {
|
|
|
777
777
|
stats: {
|
|
778
778
|
scoreMin: number;
|
|
779
779
|
scoreMax: number;
|
|
780
|
-
}
|
|
780
|
+
};
|
|
781
781
|
statsFetchInProgress: AbortController | undefined;
|
|
782
782
|
} & {
|
|
783
|
-
updateStats(
|
|
783
|
+
updateStats({ scoreMin, scoreMax, }: {
|
|
784
784
|
scoreMin: number;
|
|
785
785
|
scoreMax: number;
|
|
786
786
|
}): void;
|
|
@@ -788,7 +788,7 @@ export default class WigglePlugin extends Plugin {
|
|
|
788
788
|
setPosColor(color: string): void;
|
|
789
789
|
setNegColor(color: string): void;
|
|
790
790
|
setLoading(aborter: AbortController): void;
|
|
791
|
-
selectFeature(feature: import("@jbrowse/core/util
|
|
791
|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
792
792
|
setResolution(res: number): void;
|
|
793
793
|
setFill(fill: boolean): void;
|
|
794
794
|
toggleLogScale(): void;
|
|
@@ -820,7 +820,7 @@ export default class WigglePlugin extends Plugin {
|
|
|
820
820
|
stats: {
|
|
821
821
|
scoreMin: number;
|
|
822
822
|
scoreMax: number;
|
|
823
|
-
}
|
|
823
|
+
};
|
|
824
824
|
autoscaleType: any;
|
|
825
825
|
scaleType: any;
|
|
826
826
|
inverted: any;
|