@jbrowse/plugin-wiggle 1.5.0 → 1.5.4

package/dist/plugin-wiggle.esm.js

@@ -13,7 +13,7 @@ import { featureSpanPx, getSession, isSelectionContainer, isAbortException, getC
 import { scaleLinear, scaleLog, scaleQuantize } from 'd3-scale';
 import { types, getEnv, addDisposer, isAlive } from 'mobx-state-tree';
 import { baseLinearDisplayConfigSchema, BaseLinearDisplayComponent, BaseLinearDisplay } from '@jbrowse/plugin-linear-genome-view';
-import { getRpcSessionId } from '@jbrowse/core/util/tracks';
+import { getRpcSessionId, getFileName } from '@jbrowse/core/util/tracks';
 import { observable, autorun, when } from 'mobx';
 import { Axis, LEFT, RIGHT, axisPropsFromTickScale } from 'react-d3-axis';
 import { Portal, makeStyles, alpha, Dialog as Dialog$1, DialogTitle as DialogTitle$1, IconButton as IconButton$1, DialogContent as DialogContent$1, Button as Button$1 } from '@material-ui/core';
@@ -45,14 +45,9 @@ function ownKeys(object, enumerableOnly) {
 
   if (Object.getOwnPropertySymbols) {
     var symbols = Object.getOwnPropertySymbols(object);
-
-    if (enumerableOnly) {
-      symbols = symbols.filter(function (sym) {
-        return Object.getOwnPropertyDescriptor(object, sym).enumerable;
-      });
-    }
-
-    keys.push.apply(keys, symbols);
+    enumerableOnly && (symbols = symbols.filter(function (sym) {
+      return Object.getOwnPropertyDescriptor(object, sym).enumerable;
+    })), keys.push.apply(keys, symbols);
   }
 
   return keys;
@@ -60,19 +55,12 @@ function ownKeys(object, enumerableOnly) {
 
 function _objectSpread2(target) {
   for (var i = 1; i < arguments.length; i++) {
-    var source = arguments[i] != null ? arguments[i] : {};
-
-    if (i % 2) {
-      ownKeys(Object(source), true).forEach(function (key) {
-        _defineProperty(target, key, source[key]);
-      });
-    } else if (Object.getOwnPropertyDescriptors) {
-      Object.defineProperties(target, Object.getOwnPropertyDescriptors(source));
-    } else {
-      ownKeys(Object(source)).forEach(function (key) {
-        Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key));
-      });
-    }
+    var source = null != arguments[i] ? arguments[i] : {};
+    i % 2 ? ownKeys(Object(source), !0).forEach(function (key) {
+      _defineProperty(target, key, source[key]);
+    }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) {
+      Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key));
+    });
   }
 
   return target;
@@ -133,6 +121,9 @@ function _defineProperties(target, props) {
 function _createClass(Constructor, protoProps, staticProps) {
   if (protoProps) _defineProperties(Constructor.prototype, protoProps);
   if (staticProps) _defineProperties(Constructor, staticProps);
+  Object.defineProperty(Constructor, "prototype", {
+    writable: false
+  });
   return Constructor;
 }
 
@@ -156,12 +147,15 @@ function _inherits(subClass, superClass) {
     throw new TypeError("Super expression must either be null or a function");
   }
 
-  subClass.prototype = Object.create(superClass && superClass.prototype, {
-    constructor: {
-      value: subClass,
-      writable: true,
-      configurable: true
-    }
+  Object.defineProperty(subClass, "prototype", {
+    value: Object.create(superClass && superClass.prototype, {
+      constructor: {
+        value: subClass,
+        writable: true,
+        configurable: true
+      }
+    }),
+    writable: false
   });
   if (superClass) _setPrototypeOf(subClass, superClass);
 }
@@ -241,7 +235,7 @@ function _superPropBase(object, property) {
   return object;
 }
 
-function _get(target, property, receiver) {
+function _get() {
   if (typeof Reflect !== "undefined" && Reflect.get) {
     _get = Reflect.get;
   } else {
@@ -252,14 +246,14 @@ function _get(target, property, receiver) {
       var desc = Object.getOwnPropertyDescriptor(base, property);
 
       if (desc.get) {
-        return desc.get.call(receiver);
+        return desc.get.call(arguments.length < 3 ? target : receiver);
       }
 
       return desc.value;
     };
   }
 
-  return _get(target, property, receiver || target);
+  return _get.apply(this, arguments);
 }
 
 function _slicedToArray(arr, i) {
@@ -1667,7 +1661,7 @@ function WiggleConfigFactory(pluginManager) {
 
 function toP() {
   var s = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : 0;
-  return parseFloat(s.toPrecision(6));
+  return +(+s).toPrecision(6);
 }
 
 function round(value) {
@@ -1693,8 +1687,7 @@ var useStyles = /*#__PURE__*/makeStyles(function (theme) {
       fontSize: theme.typography.pxToRem(10),
       lineHeight: "".concat(round(14 / 10), "em"),
       maxWidth: 300,
-      wordWrap: 'break-word',
-      fontWeight: theme.typography.fontWeightMedium
+      wordWrap: 'break-word'
     },
     hoverVertical: {
       background: '#333',
@@ -1730,7 +1723,6 @@ var Tooltip = /*#__PURE__*/observer(function (_ref2) {
       clientRect = _ref2.clientRect,
       TooltipContents = _ref2.TooltipContents;
   var featureUnderMouse = model.featureUnderMouse;
-  var classes = useStyles();
 
   var _useState = useState(0),
       _useState2 = _slicedToArray(_useState, 2),
@@ -1739,9 +1731,10 @@ var Tooltip = /*#__PURE__*/observer(function (_ref2) {
 
   var _useState3 = useState(null),
       _useState4 = _slicedToArray(_useState3, 2),
-      popperElement = _useState4[0],
-      setPopperElement = _useState4[1]; // must be memoized a la https://github.com/popperjs/react-popper/issues/391
+      anchorEl = _useState4[0],
+      setAnchorEl = _useState4[1];
 
+  var classes = useStyles(); // must be memoized a la https://github.com/popperjs/react-popper/issues/391
 
   var virtElement = useMemo(function () {
     return {
@@ -1763,12 +1756,12 @@ var Tooltip = /*#__PURE__*/observer(function (_ref2) {
     };
   }, [clientRect === null || clientRect === void 0 ? void 0 : clientRect.top, clientMouseCoord, width]);
 
-  var _usePopper = usePopper(virtElement, popperElement),
+  var _usePopper = usePopper(virtElement, anchorEl),
       styles = _usePopper.styles,
       attributes = _usePopper.attributes;
 
   return featureUnderMouse ? React.createElement(React.Fragment, null, React.createElement(Portal, null, React.createElement("div", Object.assign({
-    ref: setPopperElement,
+    ref: setAnchorEl,
     className: classes.tooltip,
     // zIndex needed to go over widget drawer
     style: _objectSpread2(_objectSpread2({}, styles.popper), {}, {
@@ -3067,6 +3060,31 @@ var WigglePlugin = /*#__PURE__*/function (_Plugin) {
           }
         });
       });
+      pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', function (adapterGuesser) {
+        return function (file, index, adapterHint) {
+          var regexGuess = /\.(bw|bigwig)$/i;
+          var adapterName = 'BigWigAdapter';
+          var fileName = getFileName(file);
+
+          if (regexGuess.test(fileName) || adapterHint === adapterName) {
+            return {
+              type: adapterName,
+              bigWigLocation: file
+            };
+          }
+
+          return adapterGuesser(file, index, adapterHint);
+        };
+      });
+      pluginManager.addToExtensionPoint('Core-guessTrackTypeForLocation', function (trackTypeGuesser) {
+        return function (adapterName) {
+          if (adapterName === 'BigWigAdapter') {
+            return 'QuantitativeTrack';
+          }
+
+          return trackTypeGuesser(adapterName);
+        };
+      });
       pluginManager.addRendererType(function () {
         return new DensityRenderer({
           name: 'DensityRenderer',