@jbrowse/plugin-wiggle 1.4.4 → 1.5.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (25) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.d.ts +6 -5
  2. package/dist/BigWigAdapter/index.d.ts +0 -1
  3. package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +7 -2
  4. package/dist/LinearWiggleDisplay/models/model.d.ts +10 -10
  5. package/dist/WiggleRPC/rpcMethods.d.ts +1 -22
  6. package/dist/WiggleRendering.d.ts +1 -0
  7. package/dist/index.d.ts +38 -37
  8. package/dist/plugin-wiggle.cjs.development.js +312 -261
  9. package/dist/plugin-wiggle.cjs.development.js.map +1 -1
  10. package/dist/plugin-wiggle.cjs.production.min.js +1 -1
  11. package/dist/plugin-wiggle.cjs.production.min.js.map +1 -1
  12. package/dist/plugin-wiggle.esm.js +313 -262
  13. package/dist/plugin-wiggle.esm.js.map +1 -1
  14. package/package.json +3 -3
  15. package/src/BigWigAdapter/BigWigAdapter.test.ts +5 -1
  16. package/src/BigWigAdapter/BigWigAdapter.ts +16 -9
  17. package/src/BigWigAdapter/configSchema.ts +4 -1
  18. package/src/BigWigAdapter/index.ts +0 -1
  19. package/src/LinearWiggleDisplay/components/Tooltip.tsx +13 -8
  20. package/src/LinearWiggleDisplay/models/configSchema.ts +6 -9
  21. package/src/LinearWiggleDisplay/models/model.tsx +23 -15
  22. package/src/WiggleRPC/rpcMethods.ts +6 -3
  23. package/src/WiggleRendering.tsx +1 -0
  24. package/src/XYPlotRenderer/XYPlotRenderer.ts +1 -1
  25. package/src/index.ts +44 -5
package/dist/BigWigAdapter/BigWigAdapter.d.ts CHANGED
@@ -1,21 +1,22 @@
1
1
  import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
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- import { NoAssemblyRegion } from '@jbrowse/core/util/types';
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+ import { AugmentedRegion as Region } from '@jbrowse/core/util/types';
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  import { Feature } from '@jbrowse/core/util/simpleFeature';
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  import { Instance } from 'mobx-state-tree';
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+ import PluginManager from '@jbrowse/core/PluginManager';
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  import configSchema from './configSchema';
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+ import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
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  interface WiggleOptions extends BaseOptions {
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  resolution?: number;
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  }
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  export default class BigWigAdapter extends BaseFeatureDataAdapter {
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  private bigwig;
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  static capabilities: string[];
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- constructor(config: Instance<typeof configSchema>);
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+ constructor(config: Instance<typeof configSchema>, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
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  private setup;
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  getRefNames(opts?: BaseOptions): Promise<string[]>;
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  refIdToName(refId: number): Promise<any>;
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  getGlobalStats(opts?: BaseOptions): Promise<import("@jbrowse/core/util/stats").FeatureStats>;
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- getFeatures(region: NoAssemblyRegion, opts?: WiggleOptions): import("rxjs").Observable<Feature>;
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+ getFeatures(region: Region, opts?: WiggleOptions): import("rxjs").Observable<Feature>;
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  freeResources(): void;
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  }
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- declare const adapterCapabilities: string[];
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- export { adapterCapabilities };
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+ export {};
package/dist/BigWigAdapter/index.d.ts CHANGED
@@ -1,2 +1 @@
1
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  export { default as configSchema } from './configSchema';
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- export { adapterCapabilities } from './BigWigAdapter';
package/dist/LinearWiggleDisplay/components/Tooltip.d.ts CHANGED
@@ -1,7 +1,10 @@
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  import React from 'react';
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+ import { Feature } from '@jbrowse/core/util/simpleFeature';
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  declare type Coord = [number, number];
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  declare const Tooltip: ({ model, height, clientMouseCoord, offsetMouseCoord, clientRect, TooltipContents, }: {
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- model: any;
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+ model: {
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+ featureUnderMouse: Feature;
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+ };
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  height: number;
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  clientMouseCoord: Coord;
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  offsetMouseCoord: Coord;
@@ -9,7 +12,9 @@ declare const Tooltip: ({ model, height, clientMouseCoord, offsetMouseCoord, cli
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  TooltipContents: React.FC<any>;
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  }) => JSX.Element | null;
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  declare const WiggleTooltip: (props: {
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- model: any;
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+ model: {
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+ featureUnderMouse: Feature;
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+ };
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  height: number;
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  offsetMouseCoord: Coord;
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  clientMouseCoord: Coord;
package/dist/LinearWiggleDisplay/models/model.d.ts CHANGED
@@ -32,7 +32,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
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  features: Map<string, Feature> | undefined;
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  layout: any;
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  status: string;
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- error: Error | undefined;
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+ error: unknown;
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  message: string | undefined;
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  maxHeightReached: boolean;
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  ReactComponent: ({ model, }: {
@@ -52,7 +52,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
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  maxHeightReached: boolean;
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  renderProps: any;
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  } | undefined): void;
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- setError(error: Error): void;
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+ setError(error: unknown): void;
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  reload(): void;
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  beforeDestroy(): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
@@ -75,7 +75,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
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  }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
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  }, {
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  rendererTypeName: string;
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- error: Error | undefined;
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+ error: unknown;
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  } & {
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  readonly RenderingComponent: React.FC<{
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  model: import("mobx-state-tree").ModelInstanceTypeProps<{
@@ -84,14 +84,14 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  }> & {
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  rendererTypeName: string;
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- error: Error | undefined;
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+ error: unknown;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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  type: import("mobx-state-tree").ISimpleType<string>;
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  }, {
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  rendererTypeName: string;
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- error: Error | undefined;
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+ error: unknown;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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  onHorizontalScroll?: Function | undefined;
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  blockState?: Record<string, any> | undefined;
@@ -103,14 +103,14 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  }> & {
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  rendererTypeName: string;
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- error: Error | undefined;
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+ error: unknown;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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  type: import("mobx-state-tree").ISimpleType<string>;
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  }, {
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  rendererTypeName: string;
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- error: Error | undefined;
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+ error: unknown;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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  }> | null;
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  readonly adapterConfig: any;
@@ -122,7 +122,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
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  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
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  regionCannotBeRendered(): undefined;
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  } & {
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- setError(error?: Error | undefined): void;
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+ setError(error?: unknown): void;
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  setRpcDriverName(rpcDriverName: string): void;
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  reload(): void;
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  } & {
@@ -170,7 +170,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
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  }[];
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  renderProps(): any;
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  } & {
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- renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/dist/LinearGenomeView").ExportSvgOptions & {
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+ renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
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  overrideHeight: number;
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  }): Promise<JSX.Element>;
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  } & {
@@ -244,7 +244,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
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  } & {
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  reload(): Promise<void>;
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  afterAttach(): void;
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- renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/dist/LinearGenomeView").ExportSvgOptions & {
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+ renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
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  overrideHeight: number;
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  }): Promise<JSX.Element>;
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  }, import("mobx-state-tree")._NotCustomized, {
package/dist/WiggleRPC/rpcMethods.d.ts CHANGED
@@ -19,28 +19,7 @@ export declare class WiggleGetMultiRegionStats extends RpcMethodType {
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  serializeArguments(args: RenderArgs & {
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  signal?: AbortSignal;
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  statusCallback?: Function;
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- }): Promise<(RenderArgs & {
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- signal?: AbortSignal | undefined;
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- statusCallback?: Function | undefined;
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- }) | ({
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- filters: string[];
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- adapterConfig: {};
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- rendererType: string;
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- config: import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> | (import("mobx-state-tree").ModelInstanceTypeProps<Record<string, any>> & {
30
- setSubschema(slotName: string, data: import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType | import("mobx-state-tree").ModelPropertiesDeclaration): any;
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- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType>) | undefined;
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- sessionId: string;
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- signal?: AbortSignal | undefined;
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- theme: import("@material-ui/core").ThemeOptions;
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- exportSVG: {
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- rasterizeLayers?: boolean | undefined;
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- };
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- statusCallback?: Function | undefined;
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- } & {
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- regions: (Region & {
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- originalRefName?: string | undefined;
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- })[];
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- })>;
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+ }, rpcDriverClassName: string): Promise<{}>;
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  execute(args: {
45
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  adapterConfig: {};
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  signal?: RemoteAbortSignal;
package/dist/WiggleRendering.d.ts CHANGED
@@ -10,6 +10,7 @@ declare function WiggleRendering(props: {
10
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  onMouseLeave: Function;
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  onMouseMove: Function;
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  onFeatureClick: Function;
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+ blockKey: string;
13
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  }): JSX.Element;
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  declare const _default: typeof WiggleRendering;
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  export default _default;
package/dist/index.d.ts CHANGED
@@ -39,7 +39,7 @@ export default class WigglePlugin extends Plugin {
39
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  features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature> | undefined;
40
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  layout: any;
41
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  status: string;
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- error: Error | undefined;
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+ error: unknown;
43
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  message: string | undefined;
44
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  maxHeightReached: boolean;
45
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  ReactComponent: ({ model, }: {
@@ -59,7 +59,7 @@ export default class WigglePlugin extends Plugin {
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  maxHeightReached: boolean;
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  renderProps: any;
61
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  } | undefined): void;
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- setError(error: Error): void;
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+ setError(error: unknown): void;
63
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  reload(): void;
64
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  beforeDestroy(): void;
65
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
@@ -82,7 +82,7 @@ export default class WigglePlugin extends Plugin {
82
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  }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
83
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  }> & {
84
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  rendererTypeName: string;
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- error: Error | undefined;
85
+ error: unknown;
86
86
  } & {
87
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  readonly RenderingComponent: import("react").FC<{
88
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  model: import("mobx-state-tree").ModelInstanceTypeProps<{
@@ -91,14 +91,14 @@ export default class WigglePlugin extends Plugin {
91
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
92
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  }> & {
93
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  rendererTypeName: string;
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- error: Error | undefined;
94
+ error: unknown;
95
95
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
96
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  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
97
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  type: import("mobx-state-tree").ISimpleType<string>;
98
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
99
99
  }, {
100
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  rendererTypeName: string;
101
- error: Error | undefined;
101
+ error: unknown;
102
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
103
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  onHorizontalScroll?: Function | undefined;
104
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  blockState?: Record<string, any> | undefined;
@@ -110,14 +110,14 @@ export default class WigglePlugin extends Plugin {
110
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
111
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  }> & {
112
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  rendererTypeName: string;
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- error: Error | undefined;
113
+ error: unknown;
114
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
115
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  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
116
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  type: import("mobx-state-tree").ISimpleType<string>;
117
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
118
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  }, {
119
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  rendererTypeName: string;
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- error: Error | undefined;
120
+ error: unknown;
121
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
122
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  }> | null;
123
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  readonly adapterConfig: any;
@@ -129,7 +129,7 @@ export default class WigglePlugin extends Plugin {
129
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  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
130
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  regionCannotBeRendered(): undefined;
131
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  } & {
132
- setError(error?: Error | undefined): void;
132
+ setError(error?: unknown): void;
133
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  setRpcDriverName(rpcDriverName: string): void;
134
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  reload(): void;
135
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  } & {
@@ -167,8 +167,8 @@ export default class WigglePlugin extends Plugin {
167
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  reload(): void;
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  setContextMenuFeature(feature?: import("@jbrowse/core/util/simpleFeature").Feature | undefined): void;
169
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  } & {
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- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Zoom in to see features";
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- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
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+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Zoom in to see features";
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+ regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | undefined;
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  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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  contextMenuItems(): {
174
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  label: string;
@@ -177,7 +177,7 @@ export default class WigglePlugin extends Plugin {
177
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  }[];
178
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  renderProps(): any;
179
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  } & {
180
- renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/dist/LinearGenomeView").ExportSvgOptions & {
180
+ renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
181
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  overrideHeight: number;
182
182
  }): Promise<JSX.Element>;
183
183
  } & {
@@ -251,7 +251,7 @@ export default class WigglePlugin extends Plugin {
251
251
  } & {
252
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  reload(): Promise<void>;
253
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  afterAttach(): void;
254
- renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/dist/LinearGenomeView").ExportSvgOptions & {
254
+ renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
255
255
  overrideHeight: number;
256
256
  }): Promise<JSX.Element>;
257
257
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
@@ -282,7 +282,7 @@ export default class WigglePlugin extends Plugin {
282
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  features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature> | undefined;
283
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  layout: any;
284
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  status: string;
285
- error: Error | undefined;
285
+ error: unknown;
286
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  message: string | undefined;
287
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  maxHeightReached: boolean;
288
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  ReactComponent: ({ model, }: {
@@ -302,7 +302,7 @@ export default class WigglePlugin extends Plugin {
302
302
  maxHeightReached: boolean;
303
303
  renderProps: any;
304
304
  } | undefined): void;
305
- setError(error: Error): void;
305
+ setError(error: unknown): void;
306
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  reload(): void;
307
307
  beforeDestroy(): void;
308
308
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
@@ -325,7 +325,7 @@ export default class WigglePlugin extends Plugin {
325
325
  }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
326
326
  }, {
327
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  rendererTypeName: string;
328
- error: Error | undefined;
328
+ error: unknown;
329
329
  } & {
330
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  readonly RenderingComponent: import("react").FC<{
331
331
  model: import("mobx-state-tree").ModelInstanceTypeProps<{
@@ -334,14 +334,14 @@ export default class WigglePlugin extends Plugin {
334
334
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
335
335
  }> & {
336
336
  rendererTypeName: string;
337
- error: Error | undefined;
337
+ error: unknown;
338
338
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
339
339
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
340
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  type: import("mobx-state-tree").ISimpleType<string>;
341
341
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
342
342
  }, {
343
343
  rendererTypeName: string;
344
- error: Error | undefined;
344
+ error: unknown;
345
345
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
346
346
  onHorizontalScroll?: Function | undefined;
347
347
  blockState?: Record<string, any> | undefined;
@@ -353,14 +353,14 @@ export default class WigglePlugin extends Plugin {
353
353
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
354
354
  }> & {
355
355
  rendererTypeName: string;
356
- error: Error | undefined;
356
+ error: unknown;
357
357
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
358
358
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
359
359
  type: import("mobx-state-tree").ISimpleType<string>;
360
360
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
361
361
  }, {
362
362
  rendererTypeName: string;
363
- error: Error | undefined;
363
+ error: unknown;
364
364
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
365
365
  }> | null;
366
366
  readonly adapterConfig: any;
@@ -372,7 +372,7 @@ export default class WigglePlugin extends Plugin {
372
372
  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
373
373
  regionCannotBeRendered(): undefined;
374
374
  } & {
375
- setError(error?: Error | undefined): void;
375
+ setError(error?: unknown): void;
376
376
  setRpcDriverName(rpcDriverName: string): void;
377
377
  reload(): void;
378
378
  } & {
@@ -410,8 +410,8 @@ export default class WigglePlugin extends Plugin {
410
410
  reload(): void;
411
411
  setContextMenuFeature(feature?: import("@jbrowse/core/util/simpleFeature").Feature | undefined): void;
412
412
  } & {
413
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Zoom in to see features";
414
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
413
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Zoom in to see features";
414
+ regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | undefined;
415
415
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
416
416
  contextMenuItems(): {
417
417
  label: string;
@@ -420,7 +420,7 @@ export default class WigglePlugin extends Plugin {
420
420
  }[];
421
421
  renderProps(): any;
422
422
  } & {
423
- renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/dist/LinearGenomeView").ExportSvgOptions & {
423
+ renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
424
424
  overrideHeight: number;
425
425
  }): Promise<JSX.Element>;
426
426
  } & {
@@ -494,7 +494,7 @@ export default class WigglePlugin extends Plugin {
494
494
  } & {
495
495
  reload(): Promise<void>;
496
496
  afterAttach(): void;
497
- renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/dist/LinearGenomeView").ExportSvgOptions & {
497
+ renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
498
498
  overrideHeight: number;
499
499
  }): Promise<JSX.Element>;
500
500
  }, import("mobx-state-tree")._NotCustomized, {
@@ -506,7 +506,7 @@ export default class WigglePlugin extends Plugin {
506
506
  } & import("mobx-state-tree")._NotCustomized>>;
507
507
  }) => JSX.Element;
508
508
  XYPlotRendererReactComponent: (props: {
509
- regions: import("@jbrowse/core/util").Region[];
509
+ regions: import("@jbrowse/core/util/types").Region[];
510
510
  features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature>;
511
511
  bpPerPx: number;
512
512
  width: number;
@@ -514,6 +514,7 @@ export default class WigglePlugin extends Plugin {
514
514
  onMouseLeave: Function;
515
515
  onMouseMove: Function;
516
516
  onFeatureClick: Function;
517
+ blockKey: string;
517
518
  }) => JSX.Element;
518
519
  XYPlotRenderer: typeof XYPlotRenderer;
519
520
  xyPlotRendererConfigSchema: import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
@@ -547,7 +548,7 @@ export default class WigglePlugin extends Plugin {
547
548
  features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature> | undefined;
548
549
  layout: any;
549
550
  status: string;
550
- error: Error | undefined;
551
+ error: unknown;
551
552
  message: string | undefined;
552
553
  maxHeightReached: boolean;
553
554
  ReactComponent: ({ model, }: {
@@ -567,7 +568,7 @@ export default class WigglePlugin extends Plugin {
567
568
  maxHeightReached: boolean;
568
569
  renderProps: any;
569
570
  } | undefined): void;
570
- setError(error: Error): void;
571
+ setError(error: unknown): void;
571
572
  reload(): void;
572
573
  beforeDestroy(): void;
573
574
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
@@ -590,7 +591,7 @@ export default class WigglePlugin extends Plugin {
590
591
  }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
591
592
  }, {
592
593
  rendererTypeName: string;
593
- error: Error | undefined;
594
+ error: unknown;
594
595
  } & {
595
596
  readonly RenderingComponent: import("react").FC<{
596
597
  model: import("mobx-state-tree").ModelInstanceTypeProps<{
@@ -599,14 +600,14 @@ export default class WigglePlugin extends Plugin {
599
600
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
600
601
  }> & {
601
602
  rendererTypeName: string;
602
- error: Error | undefined;
603
+ error: unknown;
603
604
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
604
605
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
605
606
  type: import("mobx-state-tree").ISimpleType<string>;
606
607
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
607
608
  }, {
608
609
  rendererTypeName: string;
609
- error: Error | undefined;
610
+ error: unknown;
610
611
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
611
612
  onHorizontalScroll?: Function | undefined;
612
613
  blockState?: Record<string, any> | undefined;
@@ -618,14 +619,14 @@ export default class WigglePlugin extends Plugin {
618
619
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
619
620
  }> & {
620
621
  rendererTypeName: string;
621
- error: Error | undefined;
622
+ error: unknown;
622
623
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
623
624
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
624
625
  type: import("mobx-state-tree").ISimpleType<string>;
625
626
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
626
627
  }, {
627
628
  rendererTypeName: string;
628
- error: Error | undefined;
629
+ error: unknown;
629
630
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
630
631
  }> | null;
631
632
  readonly adapterConfig: any;
@@ -637,7 +638,7 @@ export default class WigglePlugin extends Plugin {
637
638
  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
638
639
  regionCannotBeRendered(): undefined;
639
640
  } & {
640
- setError(error?: Error | undefined): void;
641
+ setError(error?: unknown): void;
641
642
  setRpcDriverName(rpcDriverName: string): void;
642
643
  reload(): void;
643
644
  } & {
@@ -675,8 +676,8 @@ export default class WigglePlugin extends Plugin {
675
676
  reload(): void;
676
677
  setContextMenuFeature(feature?: import("@jbrowse/core/util/simpleFeature").Feature | undefined): void;
677
678
  } & {
678
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Zoom in to see features";
679
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
679
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Zoom in to see features";
680
+ regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | undefined;
680
681
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
681
682
  contextMenuItems(): {
682
683
  label: string;
@@ -685,7 +686,7 @@ export default class WigglePlugin extends Plugin {
685
686
  }[];
686
687
  renderProps(): any;
687
688
  } & {
688
- renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/dist/LinearGenomeView").ExportSvgOptions & {
689
+ renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
689
690
  overrideHeight: number;
690
691
  }): Promise<JSX.Element>;
691
692
  } & {
@@ -759,7 +760,7 @@ export default class WigglePlugin extends Plugin {
759
760
  } & {
760
761
  reload(): Promise<void>;
761
762
  afterAttach(): void;
762
- renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/dist/LinearGenomeView").ExportSvgOptions & {
763
+ renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
763
764
  overrideHeight: number;
764
765
  }): Promise<JSX.Element>;
765
766
  }, import("mobx-state-tree")._NotCustomized, {