@jbrowse/plugin-variants 2.8.0 → 2.10.0

package/dist/ChordVariantDisplay/models/stateModelFactory.d.ts

@@ -3,7 +3,8 @@ import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
 import { Feature } from '@jbrowse/core/util';
 /**
  * #stateModel ChordVariantDisplay
- * extends `BaseChordDisplay`
+ * extends
+ * - [BaseChordDisplay](../basechorddisplay)
  */
 declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -117,7 +118,7 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
 } & {
     afterAttach(): void;
 } & {
-    renderSvg(opts: import("@jbrowse/plugin-circular-view/src/CircularView/models/CircularView").ExportSvgOptions & {
+    renderSvg(opts: import("@jbrowse/plugin-circular-view/src/CircularView/models/model").ExportSvgOptions & {
         theme: import("@mui/material").ThemeOptions;
     }): Promise<import("react").JSX.Element>;
 } & {

package/dist/ChordVariantDisplay/models/stateModelFactory.js

@@ -7,7 +7,8 @@ const util_1 = require("@jbrowse/core/util");
 const tracks_1 = require("@jbrowse/core/util/tracks");
 /**
  * #stateModel ChordVariantDisplay
- * extends `BaseChordDisplay`
+ * extends
+ * - [BaseChordDisplay](../basechorddisplay)
  */
 const stateModelFactory = (configSchema) => {
     return mobx_state_tree_1.types

package/dist/LinearVariantDisplay/model.d.ts

@@ -4,8 +4,10 @@ import { Instance } from 'mobx-state-tree';
 import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
 /**
  * #stateModel LinearVariantDisplay
- * extends `LinearBasicDisplay`
- * very similar to basic display, but provides custom widget on feature click
+ * similar to basic display, but provides custom widget on feature click
+ * extends
+ *
+ * - [LinearBasicDisplay](../linearbasicdisplay)
  */
 export default function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -14,9 +16,6 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
 } & {
     heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
 } & {
-    /**
-     * #property
-     */
     userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
     userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
 } & {
@@ -76,12 +75,16 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             type: string;
             defaultValue: number;
             description: string;
-        };
+        }; /**
+         * #property
+         */
         height: {
             type: string;
             defaultValue: number;
             description: string;
-        };
+        }; /**
+         * #action
+         */
         mouseover: {
             type: string;
             description: string;
@@ -90,7 +93,9 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 } & {
-    type: import("mobx-state-tree").ISimpleType<"LinearBasicDisplay">;
+    type: import("mobx-state-tree").ISimpleType<"LinearBasicDisplay">; /**
+     * #property
+     */
     trackShowLabels: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
     trackShowDescriptions: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
     trackDisplayMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;

package/dist/LinearVariantDisplay/model.js

@@ -7,8 +7,10 @@ const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view"
 const mobx_state_tree_1 = require("mobx-state-tree");
 /**
  * #stateModel LinearVariantDisplay
- * extends `LinearBasicDisplay`
- * very similar to basic display, but provides custom widget on feature click
+ * similar to basic display, but provides custom widget on feature click
+ * extends
+ *
+ * - [LinearBasicDisplay](../linearbasicdisplay)
  */
 function stateModelFactory(configSchema) {
     return mobx_state_tree_1.types

package/dist/VariantFeatureWidget/index.d.ts

@@ -10,6 +10,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     track: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
     trackId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
     trackType: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    maxDepth: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
 } & {
     type: import("mobx-state-tree").ISimpleType<"VariantFeatureWidget">;
     descriptions: import("mobx-state-tree").IType<any, any, any>;
@@ -19,7 +20,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     setFeatureData(featureData: Record<string, unknown>): void;
     clearFeatureData(): void;
     setFormattedData(feat: Record<string, unknown>): void;
-    setExtra(type?: string | undefined, trackId?: string | undefined): void;
+    setExtra(type?: string | undefined, trackId?: string | undefined, maxDepth?: number | undefined): void;
     setError(e: unknown): void;
 } & {
     afterCreate(): void;
@@ -35,6 +36,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     track: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
     trackId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
     trackType: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    maxDepth: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
 }>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
     type: "BaseFeatureWidget";
     id: string;
@@ -42,6 +44,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     view: import("mobx-state-tree").ReferenceIdentifier | undefined;
     trackId: string | undefined;
     trackType: string | undefined;
+    maxDepth: number | undefined;
     formattedFields: any;
     finalizedFeatureData: any;
 } & import("mobx-state-tree")._NotCustomized>;

package/dist/VariantTrack/configSchema.d.ts

@@ -58,6 +58,11 @@ declare const configSchema: (pluginManager: PluginManager) => import("@jbrowse/c
             defaultValue: number;
             description: string;
         };
+        maxDepth: {
+            type: string;
+            defaultValue: number;
+            description: string;
+        };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
     formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         config: {

package/esm/ChordVariantDisplay/models/stateModelFactory.d.ts

@@ -3,7 +3,8 @@ import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
 import { Feature } from '@jbrowse/core/util';
 /**
  * #stateModel ChordVariantDisplay
- * extends `BaseChordDisplay`
+ * extends
+ * - [BaseChordDisplay](../basechorddisplay)
  */
 declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -117,7 +118,7 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
 } & {
     afterAttach(): void;
 } & {
-    renderSvg(opts: import("@jbrowse/plugin-circular-view/src/CircularView/models/CircularView").ExportSvgOptions & {
+    renderSvg(opts: import("@jbrowse/plugin-circular-view/src/CircularView/models/model").ExportSvgOptions & {
         theme: import("@mui/material").ThemeOptions;
     }): Promise<import("react").JSX.Element>;
 } & {

package/esm/ChordVariantDisplay/models/stateModelFactory.js

@@ -5,7 +5,8 @@ import { getContainingView } from '@jbrowse/core/util';
 import { getParentRenderProps } from '@jbrowse/core/util/tracks';
 /**
  * #stateModel ChordVariantDisplay
- * extends `BaseChordDisplay`
+ * extends
+ * - [BaseChordDisplay](../basechorddisplay)
  */
 const stateModelFactory = (configSchema) => {
     return types

package/esm/LinearVariantDisplay/model.d.ts

@@ -4,8 +4,10 @@ import { Instance } from 'mobx-state-tree';
 import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
 /**
  * #stateModel LinearVariantDisplay
- * extends `LinearBasicDisplay`
- * very similar to basic display, but provides custom widget on feature click
+ * similar to basic display, but provides custom widget on feature click
+ * extends
+ *
+ * - [LinearBasicDisplay](../linearbasicdisplay)
  */
 export default function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -14,9 +16,6 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
 } & {
     heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
 } & {
-    /**
-     * #property
-     */
     userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
     userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
 } & {
@@ -76,12 +75,16 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             type: string;
             defaultValue: number;
             description: string;
-        };
+        }; /**
+         * #property
+         */
         height: {
             type: string;
             defaultValue: number;
             description: string;
-        };
+        }; /**
+         * #action
+         */
         mouseover: {
             type: string;
             description: string;
@@ -90,7 +93,9 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 } & {
-    type: import("mobx-state-tree").ISimpleType<"LinearBasicDisplay">;
+    type: import("mobx-state-tree").ISimpleType<"LinearBasicDisplay">; /**
+     * #property
+     */
     trackShowLabels: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
     trackShowDescriptions: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
     trackDisplayMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;

package/esm/LinearVariantDisplay/model.js

@@ -5,8 +5,10 @@ import { linearBasicDisplayModelFactory } from '@jbrowse/plugin-linear-genome-vi
 import { types } from 'mobx-state-tree';
 /**
  * #stateModel LinearVariantDisplay
- * extends `LinearBasicDisplay`
- * very similar to basic display, but provides custom widget on feature click
+ * similar to basic display, but provides custom widget on feature click
+ * extends
+ *
+ * - [LinearBasicDisplay](../linearbasicdisplay)
  */
 export default function stateModelFactory(configSchema) {
     return types

package/esm/VariantFeatureWidget/index.d.ts

@@ -10,6 +10,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     track: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
     trackId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
     trackType: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    maxDepth: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
 } & {
     type: import("mobx-state-tree").ISimpleType<"VariantFeatureWidget">;
     descriptions: import("mobx-state-tree").IType<any, any, any>;
@@ -19,7 +20,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     setFeatureData(featureData: Record<string, unknown>): void;
     clearFeatureData(): void;
     setFormattedData(feat: Record<string, unknown>): void;
-    setExtra(type?: string | undefined, trackId?: string | undefined): void;
+    setExtra(type?: string | undefined, trackId?: string | undefined, maxDepth?: number | undefined): void;
     setError(e: unknown): void;
 } & {
     afterCreate(): void;
@@ -35,6 +36,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     track: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
     trackId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
     trackType: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    maxDepth: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
 }>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
     type: "BaseFeatureWidget";
     id: string;
@@ -42,6 +44,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     view: import("mobx-state-tree").ReferenceIdentifier | undefined;
     trackId: string | undefined;
     trackType: string | undefined;
+    maxDepth: number | undefined;
     formattedFields: any;
     finalizedFeatureData: any;
 } & import("mobx-state-tree")._NotCustomized>;

package/esm/VariantTrack/configSchema.d.ts

@@ -58,6 +58,11 @@ declare const configSchema: (pluginManager: PluginManager) => import("@jbrowse/c
             defaultValue: number;
             description: string;
         };
+        maxDepth: {
+            type: string;
+            defaultValue: number;
+            description: string;
+        };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
     formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         config: {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-variants",
-  "version": "2.8.0",
+  "version": "2.10.0",
   "description": "JBrowse 2 variant adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
@@ -63,5 +63,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "ee8c2bdc8bd4f1a70b1eefda984f04a2830d9ca0"
+  "gitHead": "223d8bfb68fd1bacaf22852639ad5920f1b7f43b"
 }