@jbrowse/plugin-variants 2.4.2 → 2.6.1

package/dist/ChordVariantDisplay/models/configSchema.d.ts

@@ -1,3 +1,15 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare function stateModelFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare function stateModelFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    renderer: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IAnyModelType, [undefined]>;
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    onChordClick: {
+        type: string;
+        description: string;
+        defaultValue: boolean;
+        contextVariable: string[];
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>;
 export default stateModelFactory;

package/dist/ChordVariantDisplay/models/stateModelFactory.d.ts

@@ -12,6 +12,14 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
 } & {
     bezierRadiusRatio: import("mobx-state-tree").IType<number | undefined, number, number>;
     assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        onChordClick: {
+            type: string;
+            description: string;
+            defaultValue: boolean;
+            contextVariable: string[];
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 } & {
     /**
      * #property
@@ -20,12 +28,13 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
     /**
      * #property
      */
-    configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
+    configuration: AnyConfigurationSchemaType;
 }, {
     rendererTypeName: string;
     error: unknown; /**
      * #property
      */
+    message: string | undefined;
 } & {
     readonly RenderingComponent: import("react").FC<{
         model: {
@@ -34,7 +43,10 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
             rpcDriverName: string | undefined;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
-            error: unknown;
+            error: unknown; /**
+             * #method
+             */
+            message: string | undefined;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
@@ -42,6 +54,7 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
         }, {
             rendererTypeName: string;
             error: unknown;
+            message: string | undefined;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
         onHorizontalScroll?: Function | undefined;
         blockState?: Record<string, any> | undefined;
@@ -54,6 +67,7 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
+            message: string | undefined;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
@@ -61,6 +75,7 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
         }, {
             rendererTypeName: string;
             error: unknown;
+            message: string | undefined;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }> | null;
     readonly adapterConfig: any;
@@ -70,8 +85,9 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
     readonly DisplayMessageComponent: import("react").FC<any> | undefined;
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
-    regionCannotBeRendered(): undefined;
+    regionCannotBeRendered(): null;
 } & {
+    setMessage(arg?: string | undefined): void;
     setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
     reload(): void;
@@ -107,7 +123,7 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
 } & {
     renderSvg(opts: import("@jbrowse/plugin-circular-view/src/CircularView/models/CircularView").ExportSvgOptions & {
         theme: import("@mui/material").ThemeOptions;
-    }): Promise<JSX.Element>;
+    }): Promise<import("react").JSX.Element>;
 } & {
     /**
      * #getter

package/dist/LinearVariantDisplay/configSchema.d.ts

@@ -1,5 +1,29 @@
 import { Instance } from 'mobx-state-tree';
 import PluginManager from '@jbrowse/core/PluginManager';
-export default function configSchemaF(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default function configSchemaF(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    renderer: import("mobx-state-tree").IAnyModelType;
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    maxFeatureScreenDensity: {
+        type: string;
+        description: string;
+        defaultValue: number;
+    };
+    fetchSizeLimit: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+    height: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+    mouseover: {
+        type: string;
+        description: string;
+        defaultValue: string;
+        contextVariable: string[];
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;
 export type LinearVariantDisplayConfigModel = ReturnType<typeof configSchemaF>;
 export type LinearVariantDisplayConfig = Instance<LinearVariantDisplayConfigModel>;

package/dist/LinearVariantDisplay/model.d.ts

@@ -13,6 +13,13 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
 } & {
     heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+} & {
+    /**
+     * #property
+     */
+    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+} & {
     blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
         key: import("mobx-state-tree").ISimpleType<string>;
         region: import("mobx-state-tree").IModelType<{
@@ -59,17 +66,36 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         reload(): void;
         beforeDestroy(): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        maxFeatureScreenDensity: {
+            type: string;
+            description: string;
+            defaultValue: number;
+        };
+        fetchSizeLimit: {
+            type: string;
+            defaultValue: number;
+            description: string;
+        };
+        height: {
+            type: string;
+            defaultValue: number;
+            description: string;
+        };
+        mouseover: {
+            type: string;
+            description: string;
+            defaultValue: string;
+            contextVariable: string[];
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 } & {
     type: import("mobx-state-tree").ISimpleType<"LinearBasicDisplay">;
     trackShowLabels: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
-    trackShowDescriptions: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>; /**
-     * #action
-     */
+    trackShowDescriptions: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
     trackDisplayMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
     trackMaxHeight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-    configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
+    configuration: AnyConfigurationSchemaType;
 } & {
     /**
      * #property
@@ -78,10 +104,11 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     /**
      * #property
      */
-    configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
+    configuration: AnyConfigurationSchemaType;
 }, {
     rendererTypeName: string;
     error: unknown;
+    message: string | undefined;
 } & {
     readonly RenderingComponent: import("react").FC<{
         model: {
@@ -91,6 +118,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
+            message: string | undefined;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
@@ -98,6 +126,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         }, {
             rendererTypeName: string;
             error: unknown;
+            message: string | undefined;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
         onHorizontalScroll?: Function | undefined;
         blockState?: Record<string, any> | undefined;
@@ -110,6 +139,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
+            message: string | undefined;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
@@ -117,6 +147,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         }, {
             rendererTypeName: string;
             error: unknown;
+            message: string | undefined;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }> | null;
     readonly adapterConfig: any;
@@ -126,21 +157,49 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     readonly DisplayMessageComponent: import("react").FC<any> | undefined;
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
-    regionCannotBeRendered(): undefined;
+    regionCannotBeRendered(): null;
 } & {
+    setMessage(arg?: string | undefined): void;
     setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
     reload(): void;
 } & {
-    currBpPerPx: number;
     scrollTop: number;
-    message: string;
+} & {
+    readonly height: number;
+} & {
+    setScrollTop(scrollTop: number): void;
+    setHeight(displayHeight: number): number;
+    resizeHeight(distance: number): number;
+} & {
+    featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
+    featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
+    currStatsBpPerPx: number;
+} & {
+    readonly currentBytesRequested: number;
+    readonly currentFeatureScreenDensity: number;
+    readonly maxFeatureScreenDensity: any;
+    readonly featureDensityStatsReady: boolean;
+    readonly maxAllowableBytes: number;
+} & {
+    afterAttach(): void;
+} & {
+    setCurrStatsBpPerPx(n: number): void;
+    setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
+    getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
+    setFeatureDensityStatsP(arg: any): void;
+    setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
+    clearFeatureDensityStats(): void;
+} & {
+    readonly regionTooLarge: boolean;
+    readonly regionTooLargeReason: string;
+} & {
+    regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
+    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
+} & {
     featureIdUnderMouse: string | undefined;
     contextMenuFeature: Feature | undefined;
-    estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
-    estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
-    readonly height: number;
     readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
@@ -154,49 +213,22 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
     getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
     searchFeatureByID(id: string): [number, number, number, number] | undefined;
-    readonly currentBytesRequested: number;
-    readonly currentFeatureScreenDensity: number;
-    readonly maxFeatureScreenDensity: any;
-    readonly estimatedStatsReady: boolean;
-    readonly maxAllowableBytes: number;
 } & {
-    setMessage(message: string): void;
-} & {
-    afterAttach(): void;
-    estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
-    setRegionsStatsP(arg: any): void;
-    setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
-    clearRegionsStats(): void;
-    setHeight(displayHeight: number): number;
-    resizeHeight(distance: number): number;
-    setScrollTop(scrollTop: number): void;
-    updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
     addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
-    setCurrBpPerPx(n: number): void;
     deleteBlock(key: string): void;
     selectFeature(feature: Feature): void;
     clearFeatureSelection(): void;
-    setFeatureIdUnderMouse(feature: string | undefined): void;
-    reload(): void;
+    setFeatureIdUnderMouse(feature?: string | undefined): void;
     setContextMenuFeature(feature?: Feature | undefined): void;
-} & {
-    readonly regionTooLarge: boolean;
-    readonly regionTooLargeReason: string;
 } & {
     reload(): Promise<void>;
 } & {
-    afterAttach(): void;
-} & {
-    regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     renderProps(): any;
 } & {
-    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
-        overrideHeight: number;
-        theme: import("@mui/material").ThemeOptions;
-    }): Promise<JSX.Element>;
+    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
+    afterAttach(): void;
 } & {
     readonly rendererTypeName: any;
     readonly showLabels: any;

package/dist/StructuralVariantChordRenderer/Chord.d.ts

@@ -1,4 +1,4 @@
-/// <reference types="react" />
+import React from 'react';
 import { Feature } from '@jbrowse/core/util';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 export interface Region {
@@ -28,5 +28,5 @@ declare const Chord: ({ feature, blocksForRefs, radius, config, bezierRadius, se
     bezierRadius: number;
     selected: boolean;
     onClick: (feature: Feature, reg: AnyRegion, endBlock: AnyRegion, evt: unknown) => void;
-}) => JSX.Element | null;
+}) => React.JSX.Element | null;
 export default Chord;

package/dist/StructuralVariantChordRenderer/ReactComponent.d.ts

@@ -1,4 +1,4 @@
-/// <reference types="react" />
+import React from 'react';
 import { Feature } from '@jbrowse/core/util';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { Block, AnyRegion } from './Chord';
@@ -13,5 +13,5 @@ declare const _default: ({ features, config, displayModel, blockDefinitions, rad
     blockDefinitions: Block[];
     bezierRadius: number;
     onChordClick: (feature: Feature, reg: AnyRegion, endBlock: AnyRegion, evt: unknown) => void;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default _default;

package/dist/StructuralVariantChordRenderer/configSchema.d.ts

@@ -1,2 +1,30 @@
-declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    strokeColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+        contextVariable: string[];
+    };
+    /**
+     * #slot
+     */
+    strokeColorSelected: {
+        type: string;
+        description: string;
+        defaultValue: string;
+        contextVariable: string[];
+    };
+    /**
+     * #slot
+     */
+    strokeColorHover: {
+        type: string;
+        description: string;
+        defaultValue: string;
+        contextVariable: string[];
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
 export default configSchema;

package/dist/VariantFeatureWidget/AnnotGrid.d.ts

@@ -1,5 +1,6 @@
-/// <reference types="react" />
+import React from 'react';
+import { GridColDef, GridValidRowModel } from '@mui/x-data-grid';
 export default function VariantAnnotPanel({ rows, columns, }: {
-    rows: any;
-    columns: any[];
-}): JSX.Element | null;
+    rows: GridValidRowModel[];
+    columns: GridColDef[];
+}): React.JSX.Element | null;

package/dist/VariantFeatureWidget/AnnotGrid.js

@@ -1,22 +1,42 @@
 "use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-/* eslint-disable @typescript-eslint/no-explicit-any */
-const react_1 = __importDefault(require("react"));
+const react_1 = __importStar(require("react"));
 const x_data_grid_1 = require("@mui/x-data-grid");
+const material_1 = require("@mui/material");
+const ResizeBar_1 = __importStar(require("@jbrowse/core/ui/ResizeBar"));
+const util_1 = require("@jbrowse/core/util");
 function VariantAnnotPanel({ rows, columns, }) {
-    const rowHeight = 25;
-    const hideFooter = rows.length < 100;
-    const headerHeight = 80;
-    return rows.length ? (react_1.default.createElement("div", { style: {
-            height: Math.min(rows.length, 100) * rowHeight +
-                headerHeight +
-                (hideFooter ? 0 : 50),
-            width: '100%',
-        } },
-        react_1.default.createElement(x_data_grid_1.DataGrid, { rowHeight: rowHeight, rows: rows, columns: columns }))) : null;
+    const { ref, scrollLeft } = (0, ResizeBar_1.useResizeBar)();
+    const [checked, setChecked] = (0, react_1.useState)(false);
+    const [widths, setWidths] = (0, react_1.useState)(columns.map(e => (0, util_1.measureGridWidth)(rows.map(r => r[e.field]))));
+    return rows.length ? (react_1.default.createElement("div", { ref: ref },
+        react_1.default.createElement(material_1.FormControlLabel, { control: react_1.default.createElement(material_1.Checkbox, { checked: checked, onChange: event => setChecked(event.target.checked) }), label: react_1.default.createElement(material_1.Typography, { variant: "body2" }, "Show options") }),
+        react_1.default.createElement("div", { ref: ref },
+            react_1.default.createElement(ResizeBar_1.default, { widths: widths, setWidths: setWidths, scrollLeft: scrollLeft }),
+            react_1.default.createElement(x_data_grid_1.DataGrid, { rowHeight: 25, rows: rows, columns: columns.map((c, i) => ({ ...c, width: widths[i] })), slots: { toolbar: checked ? x_data_grid_1.GridToolbar : null } })))) : null;
 }
 exports.default = VariantAnnotPanel;
 //# sourceMappingURL=AnnotGrid.js.map

package/dist/VariantFeatureWidget/AnnotGrid.js.map

@@ -1 +1 @@
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+{"version":3,"file":"AnnotGrid.js","sourceRoot":"","sources":["../../src/VariantFeatureWidget/AnnotGrid.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,kDAKyB;AACzB,4CAAsE;AACtE,wEAAoE;AACpE,6CAAqD;AAErD,SAAwB,iBAAiB,CAAC,EACxC,IAAI,EACJ,OAAO,GAIR;IACC,MAAM,EAAE,GAAG,EAAE,UAAU,EAAE,GAAG,IAAA,wBAAY,GAAE,CAAA;IAC1C,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IAC7C,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,IAAA,gBAAQ,EAClC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAA,uBAAgB,EAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAC9D,CAAA;IAED,OAAO,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CACnB,uCAAK,GAAG,EAAE,GAAG;QACX,8BAAC,2BAAgB,IACf,OAAO,EACL,8BAAC,mBAAQ,IACP,OAAO,EAAE,OAAO,EAChB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,UAAU,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,GACnD,EAEJ,KAAK,EAAE,8BAAC,qBAAU,IAAC,OAAO,EAAC,OAAO,mBAA0B,GAC5D;QACF,uCAAK,GAAG,EAAE,GAAG;YACX,8BAAC,mBAAS,IACR,MAAM,EAAE,MAAM,EACd,SAAS,EAAE,SAAS,EACpB,UAAU,EAAE,UAAU,GACtB;YACF,8BAAC,sBAAQ,IACP,SAAS,EAAE,EAAE,EACb,IAAI,EAAE,IAAI,EACV,OAAO,EAAE,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAC5D,KAAK,EAAE,EAAE,OAAO,EAAE,OAAO,CAAC,CAAC,CAAC,yBAAW,CAAC,CAAC,CAAC,IAAI,EAAE,GAChD,CACE,CACF,CACP,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC;AAvCD,oCAuCC"}

package/dist/VariantFeatureWidget/BreakendOptionDialog.d.ts

@@ -1,10 +1,9 @@
-/// <reference types="react" />
+import React from 'react';
 import { Feature } from '@jbrowse/core/util';
-declare function BreakendOptionDialog({ model, handleClose, feature, viewType, }: {
+declare const _default: ({ model, handleClose, feature, viewType, }: {
     model: any;
     handleClose: () => void;
     feature: Feature;
     viewType: any;
-}): JSX.Element;
-declare const _default: typeof BreakendOptionDialog;
+}) => React.JSX.Element;
 export default _default;

package/dist/VariantFeatureWidget/BreakendOptionDialog.js

@@ -37,14 +37,14 @@ const useStyles = (0, mui_1.makeStyles)()({
         display: 'block',
     },
 });
-function BreakendOptionDialog({ model, handleClose, feature, viewType, }) {
+exports.default = (0, mobx_react_1.observer)(function BreakendOptionDialog({ model, handleClose, feature, viewType, }) {
     const { classes } = useStyles();
     const [copyTracks, setCopyTracks] = (0, react_1.useState)(true);
     const [mirrorTracks, setMirrorTracks] = (0, react_1.useState)(true);
     return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: handleClose, title: "Breakpoint split view options" },
         react_1.default.createElement(material_1.DialogContent, null,
-            react_1.default.createElement(material_1.FormControlLabel, { className: classes.block, control: react_1.default.createElement(material_1.Checkbox, { checked: copyTracks, onChange: () => setCopyTracks(val => !val) }), label: "Copy tracks into the new view" }),
-            react_1.default.createElement(material_1.FormControlLabel, { className: classes.block, control: react_1.default.createElement(material_1.Checkbox, { checked: mirrorTracks, onChange: () => setMirrorTracks(val => !val) }), label: "Mirror tracks vertically in vertically stacked view" })),
+            react_1.default.createElement(material_1.FormControlLabel, { className: classes.block, control: react_1.default.createElement(material_1.Checkbox, { checked: copyTracks, onChange: event => setCopyTracks(event.target.checked) }), label: "Copy tracks into the new view" }),
+            react_1.default.createElement(material_1.FormControlLabel, { className: classes.block, control: react_1.default.createElement(material_1.Checkbox, { checked: mirrorTracks, onChange: event => setMirrorTracks(event.target.checked) }), label: "Mirror tracks vertically in vertically stacked view" })),
         react_1.default.createElement(material_1.DialogActions, null,
             react_1.default.createElement(material_1.Button, { onClick: () => {
                     const { view } = model;
@@ -73,6 +73,5 @@ function BreakendOptionDialog({ model, handleClose, feature, viewType, }) {
                     handleClose();
                 }, variant: "contained", color: "primary", autoFocus: true }, "OK"),
             react_1.default.createElement(material_1.Button, { onClick: () => handleClose(), color: "secondary", variant: "contained" }, "Cancel"))));
-}
-exports.default = (0, mobx_react_1.observer)(BreakendOptionDialog);
+});
 //# sourceMappingURL=BreakendOptionDialog.js.map

package/dist/VariantFeatureWidget/BreakendOptionDialog.js.map

@@ -1 +1 @@
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package/dist/VariantFeatureWidget/BreakendPanel.d.ts

@@ -1,7 +1,7 @@
-/// <reference types="react" />
+import React from 'react';
 import { SimpleFeatureSerialized } from '@jbrowse/core/util/simpleFeature';
 export default function BreakendPanel(props: {
     locStrings: string[];
     model: any;
     feature: SimpleFeatureSerialized;
-}): JSX.Element;
+}): React.JSX.Element;

package/dist/VariantFeatureWidget/VariantAnnotationTable.d.ts

@@ -0,0 +1,6 @@
+import React from 'react';
+export default function VariantAnnotationTable({ data, fields, title, }: {
+    data: string[];
+    fields: string[];
+    title: string;
+}): React.JSX.Element | null;

package/dist/VariantFeatureWidget/VariantAnnotationTable.js

@@ -0,0 +1,17 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importDefault(require("react"));
+const BaseFeatureDetail_1 = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
+const AnnotGrid_1 = __importDefault(require("./AnnotGrid"));
+function VariantAnnotationTable({ data, fields, title, }) {
+    return data.length ? (react_1.default.createElement(BaseFeatureDetail_1.BaseCard, { title: title },
+        react_1.default.createElement(AnnotGrid_1.default, { rows: data.map((elt, id) => ({
+                id,
+                ...Object.fromEntries(elt.split('|').map((e, i) => [fields[i], e])),
+            })) || [], columns: fields.map(c => ({ field: c })) }))) : null;
+}
+exports.default = VariantAnnotationTable;
+//# sourceMappingURL=VariantAnnotationTable.js.map

package/dist/VariantFeatureWidget/VariantAnnotationTable.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"VariantAnnotationTable.js","sourceRoot":"","sources":["../../src/VariantFeatureWidget/VariantAnnotationTable.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,yFAA4E;AAC5E,4DAAmC;AAEnC,SAAwB,sBAAsB,CAAC,EAC7C,IAAI,EACJ,MAAM,EACN,KAAK,GAKN;IACC,OAAO,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CACnB,8BAAC,4BAAQ,IAAC,KAAK,EAAE,KAAK;QACpB,8BAAC,mBAAS,IACR,IAAI,EACF,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,EAAE,EAAE,CAAC,CAAC;gBACrB,EAAE;gBACF,GAAG,MAAM,CAAC,WAAW,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;aACpE,CAAC,CAAC,IAAI,EAAE,EAEX,OAAO,EAAE,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,CAAC,CAAC,GACxC,CACO,CACZ,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC;AAtBD,yCAsBC"}

package/dist/VariantFeatureWidget/VariantFeatureWidget.d.ts

@@ -1,4 +1,10 @@
-/// <reference types="react" />
-declare function VariantFeatureDetails(props: any): JSX.Element;
+import React from 'react';
+import { SimpleFeatureSerialized } from '@jbrowse/core/util';
+declare function VariantFeatureDetails(props: {
+    model: {
+        featureData: SimpleFeatureSerialized;
+        descriptions: Record<string, string>;
+    };
+}): React.JSX.Element;
 declare const _default: typeof VariantFeatureDetails;
 export default _default;