@jbrowse/plugin-variants 2.2.2 → 2.3.1

package/src/ChordVariantDisplay/index.ts

@@ -10,6 +10,7 @@ export default (pluginManager: PluginManager) => {
     const stateModel = stateModelF(configSchema)
     return new DisplayType({
       name: 'ChordVariantDisplay',
+      displayName: 'Chord variant display',
       configSchema,
       stateModel,
       trackType: 'VariantTrack',

package/src/ChordVariantDisplay/models/stateModelFactory.ts

@@ -46,9 +46,7 @@ const stateModelFactory = (configSchema: AnyConfigurationSchemaType) => {
           displayModel: self,
           bezierRadius: view.radiusPx * self.bezierRadiusRatio,
           radius: view.radiusPx,
-
-          // @ts-ignore
-          blockDefinitions: this.blockDefinitions,
+          blockDefinitions: self.blockDefinitions,
           config: self.configuration.renderer,
           onChordClick: self.onChordClick,
         }

package/src/LinearVariantDisplay/index.ts

@@ -9,6 +9,7 @@ export default (pluginManager: PluginManager) => {
     const configSchema = configSchemaF(pluginManager)
     return new DisplayType({
       name: 'LinearVariantDisplay',
+      displayName: 'Variant display',
       configSchema,
       stateModel: stateModelFactory(configSchema),
       trackType: 'VariantTrack',

package/src/StructuralVariantChordRenderer/Chord.tsx

@@ -0,0 +1,141 @@
+import React from 'react'
+import { observer } from 'mobx-react'
+import { polarToCartesian, Feature } from '@jbrowse/core/util'
+import {
+  AnyConfigurationModel,
+  readConfObject,
+} from '@jbrowse/core/configuration'
+import { parseBreakend } from '@gmod/vcf'
+
+export interface Region {
+  end: number
+  start: number
+  refName: string
+  elided?: false
+}
+
+export interface ElidedRegion {
+  elided: true
+  regions: Region[]
+}
+
+export type AnyRegion = Region | ElidedRegion
+
+export interface Block {
+  flipped: boolean
+  bpPerRadian: number
+  startRadians: number
+  region: AnyRegion
+}
+
+function bpToRadians(block: Block, pos: number) {
+  const blockStart = block.region.elided ? 0 : block.region.start
+  const blockEnd = block.region.elided ? 0 : block.region.end
+  const bpOffset = block.flipped ? blockEnd - pos : pos - blockStart
+  return bpOffset / block.bpPerRadian + block.startRadians
+}
+
+const Chord = observer(function Chord({
+  feature,
+  blocksForRefs,
+  radius,
+  config,
+  bezierRadius,
+  selected,
+  onClick,
+}: {
+  feature: Feature
+  blocksForRefs: { [key: string]: Block }
+  radius: number
+  config: AnyConfigurationModel
+  bezierRadius: number
+  selected: boolean
+  onClick: (
+    feature: Feature,
+    reg: AnyRegion,
+    endBlock: AnyRegion,
+    evt: unknown,
+  ) => void
+}) {
+  // find the blocks that our start and end points belong to
+  const startBlock = blocksForRefs[feature.get('refName')]
+  if (!startBlock) {
+    return null
+  }
+  let svType
+  if (feature.get('INFO')) {
+    ;[svType] = feature.get('INFO').SVTYPE || []
+  } else if (feature.get('mate')) {
+    svType = 'mate'
+  }
+  let endPosition
+  let endBlock: Block | undefined
+  const alt = feature.get('ALT')?.[0]
+  const bnd = alt && parseBreakend(alt)
+  if (bnd) {
+    // VCF BND
+    const matePosition = bnd.MatePosition.split(':')
+    endPosition = +matePosition[1]
+    endBlock = blocksForRefs[matePosition[0]]
+  } else if (alt === '<TRA>') {
+    // VCF TRA
+    const chr2 = feature.get('INFO')?.CHR2?.[0]
+    const end = feature.get('INFO')?.END?.[0]
+    endPosition = parseInt(end, 10)
+    endBlock = blocksForRefs[chr2]
+  } else if (svType === 'mate') {
+    // generic simplefeatures arcs
+    const mate = feature.get('mate')
+    const chr2 = mate.refName
+    endPosition = mate.start
+    endBlock = blocksForRefs[chr2]
+  }
+
+  if (endBlock) {
+    const startPos = feature.get('start')
+    const startRadians = bpToRadians(startBlock, startPos)
+    const endRadians = bpToRadians(endBlock, endPosition)
+    const startXY = polarToCartesian(radius, startRadians)
+    const endXY = polarToCartesian(radius, endRadians)
+    const controlXY = polarToCartesian(
+      bezierRadius,
+      (endRadians + startRadians) / 2,
+    )
+
+    const strokeColor = selected
+      ? readConfObject(config, 'strokeColorSelected', { feature })
+      : readConfObject(config, 'strokeColor', { feature })
+
+    const hoverStrokeColor = readConfObject(config, 'strokeColorHover', {
+      feature,
+    })
+    return (
+      <path
+        data-testid={`chord-${feature.id()}`}
+        d={['M', ...startXY, 'Q', ...controlXY, ...endXY].join(' ')}
+        style={{ stroke: strokeColor }}
+        onClick={evt => {
+          if (endBlock && startBlock) {
+            onClick(feature, startBlock.region, endBlock.region, evt)
+          }
+        }}
+        onMouseOver={evt => {
+          if (!selected) {
+            evt.currentTarget.style.stroke = hoverStrokeColor
+            evt.currentTarget.style.strokeWidth = '3px'
+          }
+        }}
+        onMouseOut={evt => {
+          if (!selected) {
+            evt.currentTarget.style.stroke = strokeColor
+            evt.currentTarget.style.strokeWidth = '1px'
+          }
+        }}
+      />
+    )
+  }
+
+  return null
+})
+
+export default Chord

package/src/StructuralVariantChordRenderer/ReactComponent.tsx

@@ -1,146 +1,10 @@
 import React, { useMemo } from 'react'
 import { observer } from 'mobx-react'
-import { polarToCartesian, Feature } from '@jbrowse/core/util'
-import {
-  AnyConfigurationModel,
-  readConfObject,
-} from '@jbrowse/core/configuration'
-import { parseBreakend } from '@gmod/vcf'
+import { Feature } from '@jbrowse/core/util'
+import { AnyConfigurationModel } from '@jbrowse/core/configuration'
 
-interface Region {
-  end: number
-  start: number
-  refName: string
-  elided?: false
-}
-
-interface ElidedRegion {
-  elided: true
-  regions: Region[]
-}
-
-type AnyRegion = Region | ElidedRegion
-
-interface Block {
-  flipped: boolean
-  bpPerRadian: number
-  startRadians: number
-  region: AnyRegion
-}
-
-function bpToRadians(block: Block, pos: number) {
-  const blockStart = block.region.elided ? 0 : block.region.start
-  const blockEnd = block.region.elided ? 0 : block.region.end
-  const bpOffset = block.flipped ? blockEnd - pos : pos - blockStart
-  return bpOffset / block.bpPerRadian + block.startRadians
-}
-
-const Chord = observer(function Chord({
-  feature,
-  blocksForRefs,
-  radius,
-  config,
-  bezierRadius,
-  selected,
-  onClick,
-}: {
-  feature: Feature
-  blocksForRefs: { [key: string]: Block }
-  radius: number
-  config: AnyConfigurationModel
-  bezierRadius: number
-  selected: boolean
-  onClick: (
-    feature: Feature,
-    reg: AnyRegion,
-    endBlock: AnyRegion,
-    evt: unknown,
-  ) => void
-}) {
-  // find the blocks that our start and end points belong to
-  const startBlock = blocksForRefs[feature.get('refName')]
-  if (!startBlock) {
-    return null
-  }
-  let svType
-  if (feature.get('INFO')) {
-    ;[svType] = feature.get('INFO').SVTYPE || []
-  } else if (feature.get('mate')) {
-    svType = 'mate'
-  }
-  let endPosition
-  let endBlock: Block | undefined
-  const alt = feature.get('ALT')?.[0]
-  const bnd = alt && parseBreakend(alt)
-  if (bnd) {
-    // VCF BND
-    const matePosition = bnd.MatePosition.split(':')
-    endPosition = +matePosition[1]
-    endBlock = blocksForRefs[matePosition[0]]
-  } else if (alt === '<TRA>') {
-    // VCF TRA
-    const chr2 = feature.get('INFO')?.CHR2?.[0]
-    const end = feature.get('INFO')?.END?.[0]
-    endPosition = parseInt(end, 10)
-    endBlock = blocksForRefs[chr2]
-  } else if (svType === 'mate') {
-    // generic simplefeatures arcs
-    const mate = feature.get('mate')
-    const chr2 = mate.refName
-    endPosition = mate.start
-    endBlock = blocksForRefs[chr2]
-  }
-
-  if (endBlock) {
-    const startPos = feature.get('start')
-    const startRadians = bpToRadians(startBlock, startPos)
-    const endRadians = bpToRadians(endBlock, endPosition)
-    const startXY = polarToCartesian(radius, startRadians)
-    const endXY = polarToCartesian(radius, endRadians)
-    const controlXY = polarToCartesian(
-      bezierRadius,
-      (endRadians + startRadians) / 2,
-    )
-
-    const strokeColor = selected
-      ? readConfObject(config, 'strokeColorSelected', { feature })
-      : readConfObject(config, 'strokeColor', { feature })
-
-    const hoverStrokeColor = readConfObject(config, 'strokeColorHover', {
-      feature,
-    })
-    return (
-      <path
-        data-testid={`chord-${feature.id()}`}
-        d={['M', ...startXY, 'Q', ...controlXY, ...endXY].join(' ')}
-        style={{ stroke: strokeColor }}
-        onClick={evt => {
-          if (endBlock && startBlock) {
-            onClick(feature, startBlock.region, endBlock.region, evt)
-          }
-        }}
-        onMouseOver={evt => {
-          if (!selected) {
-            // @ts-ignore
-            evt.target.style.stroke = hoverStrokeColor
-            // @ts-ignore
-            evt.target.style.strokeWidth = 3
-          }
-        }}
-        onMouseOut={evt => {
-          if (!selected) {
-            // @ts-ignore
-            evt.target.style.stroke = strokeColor
-            // @ts-ignore
-            evt.target.style.strokeWidth = 1
-          }
-        }}
-      />
-    )
-  }
-
-  return null
-})
+// locals
+import Chord, { Block, AnyRegion } from './Chord'
 
 function StructuralVariantChords(props: {
   features: Map<string, Feature>
@@ -170,19 +34,16 @@ function StructuralVariantChords(props: {
   const blocksForRefsMemo = useMemo(() => {
     const blocksForRefs = {} as { [key: string]: Block }
     blockDefinitions.forEach(block => {
-      const regions = block.region.elided
-        ? block.region.regions
-        : [block.region]
-      regions.forEach(region => {
-        blocksForRefs[region.refName] = block
-      })
+      ;(block.region.elided ? block.region.regions : [block.region]).forEach(
+        r => (blocksForRefs[r.refName] = block),
+      )
     })
     return blocksForRefs
   }, [blockDefinitions])
-  // console.log(blocksForRefs)
   const chords = []
-  for (const [id, feature] of features) {
-    const selected = String(selectedFeatureId) === String(feature.id())
+  for (const feature of features.values()) {
+    const id = feature.id()
+    const selected = String(selectedFeatureId) === String(id)
     chords.push(
       <Chord
         key={id}

package/src/StructuralVariantChordRenderer/index.ts

@@ -3,16 +3,15 @@ import PluginManager from '@jbrowse/core/PluginManager'
 import configSchema from './configSchema'
 import ReactComponent from './ReactComponent'
 
-const ChordRendererConfigF = (pluginManager: PluginManager) => {
+export default (pluginManager: PluginManager) => {
   pluginManager.addRendererType(
     () =>
       new ChordRendererType({
         name: 'StructuralVariantChordRenderer',
+        displayName: 'SV chord renderer',
         ReactComponent,
         configSchema,
         pluginManager,
       }),
   )
 }
-
-export default ChordRendererConfigF

package/src/VariantFeatureWidget/BreakendOptionDialog.tsx

@@ -8,16 +8,17 @@ import {
   DialogContent,
   FormControlLabel,
 } from '@mui/material'
-import { Dialog } from '@jbrowse/core/ui'
 import { makeStyles } from 'tss-react/mui'
 import { getSnapshot } from 'mobx-state-tree'
+// jbrowse
+import { Dialog } from '@jbrowse/core/ui'
 import { getSession, Feature } from '@jbrowse/core/util'
 
-const useStyles = makeStyles()(theme => ({
+const useStyles = makeStyles()({
   block: {
     display: 'block',
   },
-}))
+})
 
 function BreakendOptionDialog({
   model,
@@ -69,14 +70,20 @@ function BreakendOptionDialog({
                 feature,
                 view,
               )
+              function remapIds(arr: any[]) {
+                return arr.map((v: any) => ({
+                  ...v,
+                  id: v.trackId + '-' + Math.random(),
+                }))
+              }
               viewSnapshot.views[0].offsetPx -= view.width / 2 + 100
               viewSnapshot.views[1].offsetPx -= view.width / 2 + 100
               viewSnapshot.featureData = feature
-              const viewTracks: any = getSnapshot(view.tracks)
-              viewSnapshot.views[0].tracks = viewTracks
-              viewSnapshot.views[1].tracks = mirrorTracks
-                ? viewTracks.slice().reverse()
-                : viewTracks
+              const viewTracks = getSnapshot(view.tracks) as any
+              viewSnapshot.views[0].tracks = remapIds(viewTracks)
+              viewSnapshot.views[1].tracks = remapIds(
+                mirrorTracks ? viewTracks.slice().reverse() : viewTracks,
+              )
 
               session.addView('BreakpointSplitView', viewSnapshot)
             } catch (e) {

package/src/VariantTrack/index.ts

@@ -8,6 +8,7 @@ export default (pm: PluginManager) => {
     const configSchema = configSchemaF(pm)
     return new TrackType({
       name: 'VariantTrack',
+      displayName: 'Variant track',
       configSchema,
       stateModel: createBaseTrackModel(pm, 'VariantTrack', configSchema),
     })

package/src/VcfAdapter/VcfAdapter.ts

@@ -9,6 +9,8 @@ import { Feature } from '@jbrowse/core/util/simpleFeature'
 import IntervalTree from '@flatten-js/interval-tree'
 import { unzip } from '@gmod/bgzf-filehandle'
 import VCF from '@gmod/vcf'
+
+// local
 import VcfFeature from '../VcfTabixAdapter/VcfFeature'
 
 const readVcf = (f: string) => {

package/src/VcfAdapter/index.ts

@@ -7,6 +7,7 @@ export default (pluginManager: PluginManager) => {
     () =>
       new AdapterType({
         name: 'VcfAdapter',
+        displayName: 'VCF adapter',
         configSchema,
         getAdapterClass: () => import('./VcfAdapter').then(r => r.default),
       }),

package/src/VcfTabixAdapter/VcfTabixAdapter.ts

@@ -14,10 +14,11 @@ import { Feature } from '@jbrowse/core/util/simpleFeature'
 import { TabixIndexedFile } from '@gmod/tabix'
 import VcfParser from '@gmod/vcf'
 import { Observer } from 'rxjs'
-import { readConfObject } from '@jbrowse/core/configuration'
-import VcfFeature from './VcfFeature'
 import { GenericFilehandle } from 'generic-filehandle'
 
+// local
+import VcfFeature from './VcfFeature'
+
 export default class extends BaseFeatureDataAdapter {
   private configured?: Promise<{
     filehandle: GenericFilehandle
@@ -26,23 +27,17 @@ export default class extends BaseFeatureDataAdapter {
   }>
 
   private async configurePre() {
-    const vcfGzLocation = readConfObject(this.config, 'vcfGzLocation')
-    const location = readConfObject(this.config, ['index', 'location'])
-    const indexType = readConfObject(this.config, ['index', 'indexType'])
+    const pm = this.pluginManager
+    const vcfGzLocation = this.getConf('vcfGzLocation')
+    const location = this.getConf(['index', 'location'])
+    const indexType = this.getConf(['index', 'indexType'])
 
-    const filehandle = openLocation(
-      vcfGzLocation as FileLocation,
-      this.pluginManager,
-    )
+    const filehandle = openLocation(vcfGzLocation as FileLocation, pm)
     const isCSI = indexType === 'CSI'
     const vcf = new TabixIndexedFile({
       filehandle,
-      csiFilehandle: isCSI
-        ? openLocation(location, this.pluginManager)
-        : undefined,
-      tbiFilehandle: !isCSI
-        ? openLocation(location, this.pluginManager)
-        : undefined,
+      csiFilehandle: isCSI ? openLocation(location, pm) : undefined,
+      tbiFilehandle: !isCSI ? openLocation(location, pm) : undefined,
       chunkCacheSize: 50 * 2 ** 20,
       chunkSizeLimit: 1000000000,
     })

package/src/VcfTabixAdapter/index.ts

@@ -9,6 +9,7 @@ export default (pluginManager: PluginManager) => {
     () =>
       new AdapterType({
         name: 'VcfTabixAdapter',
+        displayName: 'VCF tabix adapter',
         configSchema,
         getAdapterClass: () => import('./VcfTabixAdapter').then(r => r.default),
       }),

package/dist/ChordVariantDisplay/models/ChordVariantDisplay.d.ts

@@ -1,117 +0,0 @@
-/// <reference types="react" />
-import PluginManager from '@jbrowse/core/PluginManager';
-/**
- * #stateModel ChordVariantDisplay
- * extends `BaseChordDisplay`
- */
-declare const ChordVariantDisplayF: (pluginManager: PluginManager) => {
-    stateModel: import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        type: import("mobx-state-tree").ISimpleType<string>;
-        rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    } & {
-        bezierRadiusRatio: import("mobx-state-tree").IType<number | undefined, number, number>;
-        assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    } & {
-        /**
-         * #property
-         */
-        type: import("mobx-state-tree").ISimpleType<"ChordVariantDisplay">;
-        /**
-         * #property
-         */
-        configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
-    }, {
-        rendererTypeName: string;
-        error: unknown;
-    } & {
-        readonly RenderingComponent: import("react").FC<{
-            model: {
-                id: string; /**
-                 * #property
-                 */
-                type: string;
-                rpcDriverName: string | undefined;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                rendererTypeName: string;
-                error: unknown;
-            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                type: import("mobx-state-tree").ISimpleType<string>;
-                rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-            }, {
-                rendererTypeName: string;
-                error: unknown;
-            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-            onHorizontalScroll?: Function | undefined;
-            blockState?: Record<string, any> | undefined;
-        }>;
-        readonly DisplayBlurb: import("react").FC<{
-            model: {
-                id: string;
-                type: string;
-                rpcDriverName: string | undefined;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                rendererTypeName: string;
-                error: unknown;
-            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                type: import("mobx-state-tree").ISimpleType<string>;
-                rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-            }, {
-                rendererTypeName: string;
-                error: unknown;
-            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        }> | null;
-        readonly adapterConfig: any;
-        readonly parentTrack: any;
-        renderProps(): any;
-        readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
-        readonly DisplayMessageComponent: import("react").FC<any> | undefined;
-        trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-        readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
-        regionCannotBeRendered(): undefined;
-    } & {
-        setError(error?: unknown): void;
-        setRpcDriverName(rpcDriverName: string): void;
-        reload(): void;
-    } & {
-        filled: boolean;
-        reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
-        data: undefined;
-        message: string;
-        renderingComponent: import("@jbrowse/core/util").AnyReactComponentType | undefined;
-        refNameMap: Record<string, string> | undefined;
-    } & {
-        onChordClick(feature: import("@jbrowse/core/util").Feature): void;
-    } & {
-        readonly blockDefinitions: any;
-        renderProps(): any;
-        readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
-        isCompatibleWithRenderer(renderer: import("@jbrowse/core/pluggableElementTypes").RendererType): boolean;
-        readonly selectedFeatureId: string | undefined;
-    } & {
-        renderStarted(): void;
-        renderSuccess({ message, data, reactElement, renderingComponent, }: {
-            message: string;
-            data: any;
-            reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
-            renderingComponent: import("@jbrowse/core/util").AnyReactComponentType;
-        }): void;
-        renderError(error: unknown): void;
-        setRefNameMap(refNameMap: Record<string, string>): void;
-    } & {
-        afterAttach(): void;
-    } & {
-        /**
-         * #getter
-         */
-        readonly rendererTypeName: any;
-        /**
-         * #method
-         */
-        renderProps(): Record<string, unknown>;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-    configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-};
-export default ChordVariantDisplayF;

package/dist/ChordVariantDisplay/models/ChordVariantDisplay.js

@@ -1,62 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const plugin_circular_view_1 = require("@jbrowse/plugin-circular-view");
-const configuration_1 = require("@jbrowse/core/configuration");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const util_1 = require("@jbrowse/core/util");
-const tracks_1 = require("@jbrowse/core/util/tracks");
-// locals
-const configSchema_1 = __importDefault(require("./configSchema"));
-/**
- * #stateModel ChordVariantDisplay
- * extends `BaseChordDisplay`
- */
-const ChordVariantDisplayF = (pluginManager) => {
-    const configSchema = (0, configSchema_1.default)(pluginManager);
-    const stateModel = mobx_state_tree_1.types
-        .compose('ChordVariantDisplay', plugin_circular_view_1.BaseChordDisplayModel, mobx_state_tree_1.types.model({
-        /**
-         * #property
-         */
-        type: mobx_state_tree_1.types.literal('ChordVariantDisplay'),
-        /**
-         * #property
-         */
-        configuration: (0, configuration_1.ConfigurationReference)(configSchema),
-    }))
-        .views(self => ({
-        /**
-         * #getter
-         */
-        get rendererTypeName() {
-            return self.configuration.renderer.type;
-        },
-        /**
-         * #method
-         */
-        renderProps() {
-            const view = (0, util_1.getContainingView)(self);
-            return {
-                ...(0, tracks_1.getParentRenderProps)(self),
-                rpcDriverName: self.rpcDriverName,
-                displayModel: self,
-                bezierRadius: view.radiusPx * self.bezierRadiusRatio,
-                radius: view.radiusPx,
-                // @ts-ignore
-                blockDefinitions: this.blockDefinitions,
-                config: self.configuration.renderer,
-                onChordClick: self.onChordClick,
-            };
-        },
-    }));
-    return { stateModel, configSchema };
-};
-// http://localhost:3000/test_data/hs37d5.HG002-SequelII-CCS.sv.vcf.gz.tbi
-// render request is for 1.5x the current viewing window
-// tracks all have a height
-//
-exports.default = ChordVariantDisplayF;
-//# sourceMappingURL=ChordVariantDisplay.js.map

package/dist/ChordVariantDisplay/models/ChordVariantDisplay.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"ChordVariantDisplay.js","sourceRoot":"","sources":["../../../src/ChordVariantDisplay/models/ChordVariantDisplay.ts"],"names":[],"mappings":";;;;;AAAA,wEAAqE;AACrE,+DAAoE;AACpE,qDAAuC;AACvC,6CAAsD;AACtD,sDAAgE;AAGhE,SAAS;AACT,kEAA0C;AAE1C;;;GAGG;AACH,MAAM,oBAAoB,GAAG,CAAC,aAA4B,EAAE,EAAE;IAC5D,MAAM,YAAY,GAAG,IAAA,sBAAa,EAAC,aAAa,CAAC,CAAA;IACjD,MAAM,UAAU,GAAG,uBAAK;SACrB,OAAO,CACN,qBAAqB,EACrB,4CAAqB,EACrB,uBAAK,CAAC,KAAK,CAAC;QACV;;WAEG;QACH,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,qBAAqB,CAAC;QAC1C;;WAEG;QACH,aAAa,EAAE,IAAA,sCAAsB,EAAC,YAAY,CAAC;KACpD,CAAC,CACH;SACA,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,gBAAgB;YAClB,OAAO,IAAI,CAAC,aAAa,CAAC,QAAQ,CAAC,IAAI,CAAA;QACzC,CAAC;QAED;;WAEG;QACH,WAAW;YACT,MAAM,IAAI,GAAG,IAAA,wBAAiB,EAAC,IAAI,CAAC,CAAA;YACpC,OAAO;gBACL,GAAG,IAAA,6BAAoB,EAAC,IAAI,CAAC;gBAC7B,aAAa,EAAE,IAAI,CAAC,aAAa;gBACjC,YAAY,EAAE,IAAI;gBAClB,YAAY,EAAE,IAAI,CAAC,QAAQ,GAAG,IAAI,CAAC,iBAAiB;gBACpD,MAAM,EAAE,IAAI,CAAC,QAAQ;gBAErB,aAAa;gBACb,gBAAgB,EAAE,IAAI,CAAC,gBAAgB;gBACvC,MAAM,EAAE,IAAI,CAAC,aAAa,CAAC,QAAQ;gBACnC,YAAY,EAAE,IAAI,CAAC,YAAY;aAChC,CAAA;QACH,CAAC;KACF,CAAC,CAAC,CAAA;IAEL,OAAO,EAAE,UAAU,EAAE,YAAY,EAAE,CAAA;AACrC,CAAC,CAAA;AAED,0EAA0E;AAE1E,wDAAwD;AAExD,2BAA2B;AAC3B,EAAE;AACF,kBAAe,oBAAoB,CAAA"}