@jbrowse/plugin-variants 2.15.1 → 2.15.2

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Files changed (5) hide show
  1. package/dist/VcfFeature/index.d.ts +1 -1
  2. package/dist/VcfFeature/index.js +2 -2
  3. package/esm/VcfFeature/index.d.ts +1 -1
  4. package/esm/VcfFeature/index.js +2 -2
  5. package/package.json +3 -3
package/dist/VcfFeature/index.d.ts CHANGED
@@ -33,7 +33,7 @@ export default class VCFFeature implements Feature {
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  dataFromVariant(variant: {
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  REF: string;
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  POS: number;
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- ALT: string[];
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+ ALT?: string[];
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  CHROM: string;
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  INFO: any;
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  ID?: string[];
package/dist/VcfFeature/index.js CHANGED
@@ -32,8 +32,8 @@ class VCFFeature {
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  const { REF, ALT, POS, CHROM, INFO, ID } = variant;
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  const start = POS - 1;
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  const [type, description] = (0, util_1.getSOTermAndDescription)(REF, ALT, this.parser);
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- const isTRA = ALT.includes('<TRA>');
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- const isSymbolic = ALT.some(f => f.includes('<'));
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+ const isTRA = ALT === null || ALT === void 0 ? void 0 : ALT.includes('<TRA>');
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+ const isSymbolic = ALT === null || ALT === void 0 ? void 0 : ALT.some(f => f.includes('<'));
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  return {
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  refName: CHROM,
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  start,
package/esm/VcfFeature/index.d.ts CHANGED
@@ -33,7 +33,7 @@ export default class VCFFeature implements Feature {
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  dataFromVariant(variant: {
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  REF: string;
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  POS: number;
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- ALT: string[];
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+ ALT?: string[];
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  CHROM: string;
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  INFO: any;
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  ID?: string[];
package/esm/VcfFeature/index.js CHANGED
@@ -30,8 +30,8 @@ export default class VCFFeature {
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  const { REF, ALT, POS, CHROM, INFO, ID } = variant;
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  const start = POS - 1;
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  const [type, description] = getSOTermAndDescription(REF, ALT, this.parser);
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- const isTRA = ALT.includes('<TRA>');
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- const isSymbolic = ALT.some(f => f.includes('<'));
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+ const isTRA = ALT === null || ALT === void 0 ? void 0 : ALT.includes('<TRA>');
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+ const isSymbolic = ALT === null || ALT === void 0 ? void 0 : ALT.some(f => f.includes('<'));
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  return {
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  refName: CHROM,
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  start,
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@jbrowse/plugin-variants",
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- "version": "2.15.1",
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+ "version": "2.15.2",
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  "description": "JBrowse 2 variant adapters, tracks, etc.",
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  "keywords": [
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  "jbrowse",
@@ -40,7 +40,7 @@
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  "@gmod/bgzf-filehandle": "^1.4.3",
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  "@gmod/tabix": "^1.5.6",
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  "@gmod/vcf": "^5.0.9",
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- "@jbrowse/sv-core": "^2.15.1",
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+ "@jbrowse/sv-core": "^2.15.2",
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  "@mui/icons-material": "^6.0.0",
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  "@mui/x-data-grid": "^7.0.0",
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  "generic-filehandle": "^3.0.0"
@@ -63,5 +63,5 @@
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  "distModule": "esm/index.js",
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  "srcModule": "src/index.ts",
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  "module": "esm/index.js",
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- "gitHead": "86ed70124fc5a0b1161266659d1ca9f8796bf3fe"
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+ "gitHead": "8a58cefbfe39af4c97bcb6ead354d72c9fef9224"
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  }