@jbrowse/plugin-variants 2.1.5 → 2.1.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/ChordVariantDisplay/models/ChordVariantDisplay.d.ts +2 -2
- package/dist/LinearVariantDisplay/model.d.ts +11 -3
- package/dist/LinearVariantDisplay/model.js +7 -6
- package/dist/LinearVariantDisplay/model.js.map +1 -1
- package/dist/VariantFeatureWidget/BreakendPanel.js +1 -2
- package/dist/VariantFeatureWidget/BreakendPanel.js.map +1 -1
- package/dist/VariantFeatureWidget/index.d.ts +7 -0
- package/dist/VcfAdapter/VcfAdapter.js +1 -1
- package/dist/VcfAdapter/VcfAdapter.js.map +1 -1
- package/dist/VcfTabixAdapter/VcfTabixAdapter.js.map +1 -1
- package/esm/ChordVariantDisplay/models/ChordVariantDisplay.d.ts +2 -2
- package/esm/LinearVariantDisplay/model.d.ts +11 -3
- package/esm/LinearVariantDisplay/model.js +7 -6
- package/esm/LinearVariantDisplay/model.js.map +1 -1
- package/esm/VariantFeatureWidget/BreakendPanel.js +1 -2
- package/esm/VariantFeatureWidget/BreakendPanel.js.map +1 -1
- package/esm/VariantFeatureWidget/index.d.ts +7 -0
- package/esm/VcfAdapter/VcfAdapter.js +1 -1
- package/esm/VcfAdapter/VcfAdapter.js.map +1 -1
- package/esm/VcfTabixAdapter/VcfTabixAdapter.js.map +1 -1
- package/package.json +2 -2
- package/src/LinearVariantDisplay/model.ts +13 -10
- package/src/VariantFeatureWidget/BreakendPanel.tsx +1 -2
- package/src/VariantFeatureWidget/__snapshots__/VariantFeatureWidget.test.js.snap +39 -0
- package/src/VcfAdapter/VcfAdapter.ts +1 -1
- package/src/VcfTabixAdapter/VcfTabixAdapter.ts +1 -1
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@@ -54,7 +54,7 @@ declare const ChordVariantDisplayF: (pluginManager: PluginManager) => {
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readonly adapterConfig: any;
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readonly parentTrack: any;
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renderProps(): any;
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readonly rendererType:
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readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
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readonly DisplayMessageComponent: import("react").FC<any> | undefined;
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trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
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@@ -75,7 +75,7 @@ declare const ChordVariantDisplayF: (pluginManager: PluginManager) => {
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} & {
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readonly blockDefinitions: any;
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renderProps(): any;
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readonly rendererType:
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readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
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isCompatibleWithRenderer(renderer: import("@jbrowse/core/pluggableElementTypes").RendererType): boolean;
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readonly selectedFeatureId: string | undefined;
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} & {
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@@ -108,7 +108,7 @@ export default function (configSchema: LinearVariantDisplayConfigModel): import(
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readonly adapterConfig: any;
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readonly parentTrack: any;
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renderProps(): any;
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readonly rendererType:
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readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
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readonly DisplayMessageComponent: import("react").FC<any> | undefined;
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trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
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@@ -196,7 +196,11 @@ export default function (configSchema: LinearVariantDisplayConfigModel): import(
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readonly maxHeight: any;
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readonly displayMode: any;
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} & {
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readonly rendererConfig:
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readonly rendererConfig: {
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[x: string]: any;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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setSubschema(slotName: string, data: unknown): any;
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} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
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} & {
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toggleShowLabels(): void;
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toggleShowDescriptions(): void;
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@@ -204,7 +208,11 @@ export default function (configSchema: LinearVariantDisplayConfigModel): import(
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setMaxHeight(val: number): void;
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} & {
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renderProps(): {
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config:
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config: {
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[x: string]: any;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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setSubschema(slotName: string, data: unknown): any;
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} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
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};
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trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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} & {
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@@ -18,16 +18,17 @@ function default_1(configSchema) {
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const { rpcManager } = session;
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const sessionId = (0, tracks_1.getRpcSessionId)(self);
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const track = (0, util_1.getContainingTrack)(self);
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const view = (0, util_1.getContainingView)(self);
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const adapterConfig = (0, configuration_1.getConf)(track, 'adapter');
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const
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const descriptions = await rpcManager.call(sessionId, 'CoreGetMetadata', {
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adapterConfig,
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});
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-
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session.showWidget(session.addWidget('VariantFeatureWidget', 'variantFeature', {
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featureData: feature.toJSON(),
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view
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view,
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track,
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descriptions,
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}));
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}
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session.setSelection(feature);
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},
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@@ -1 +1 @@
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-
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/LinearVariantDisplay/model.ts"],"names":[],"mappings":";;AAAA,+DAA6E;AAC7E,sDAA2D;AAC3D,6CAK2B;AAG3B,kFAAmF;AACnF,qDAAuC;AAGvC,mBAAyB,YAA6C;IACpE,OAAO,uBAAK;SACT,OAAO,CACN,sBAAsB,EACtB,IAAA,0DAA8B,EAAC,YAAY,CAAC,EAC5C,uBAAK,CAAC,KAAK,CAAC;QACV,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,sBAAsB,CAAC;QAC3C,aAAa,EAAE,IAAA,sCAAsB,EAAC,YAAY,CAAC;KACpD,CAAC,CACH;SACA,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,KAAK,CAAC,aAAa,CAAC,OAAgB;YAClC,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;YAChC,IAAI,IAAA,gCAAyB,EAAC,OAAO,CAAC,EAAE;gBACtC,MAAM,EAAE,UAAU,EAAE,GAAG,OAAO,CAAA;gBAC9B,MAAM,SAAS,GAAG,IAAA,wBAAe,EAAC,IAAI,CAAC,CAAA;gBACvC,MAAM,KAAK,GAAG,IAAA,yBAAkB,EAAC,IAAI,CAAC,CAAA;gBACtC,MAAM,aAAa,GAAG,IAAA,uBAAO,EAAC,KAAK,EAAE,SAAS,CAAC,CAAA;gBAC/C,MAAM,
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{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/LinearVariantDisplay/model.ts"],"names":[],"mappings":";;AAAA,+DAA6E;AAC7E,sDAA2D;AAC3D,6CAK2B;AAG3B,kFAAmF;AACnF,qDAAuC;AAGvC,mBAAyB,YAA6C;IACpE,OAAO,uBAAK;SACT,OAAO,CACN,sBAAsB,EACtB,IAAA,0DAA8B,EAAC,YAAY,CAAC,EAC5C,uBAAK,CAAC,KAAK,CAAC;QACV,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,sBAAsB,CAAC;QAC3C,aAAa,EAAE,IAAA,sCAAsB,EAAC,YAAY,CAAC;KACpD,CAAC,CACH;SACA,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,KAAK,CAAC,aAAa,CAAC,OAAgB;YAClC,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;YAChC,IAAI,IAAA,gCAAyB,EAAC,OAAO,CAAC,EAAE;gBACtC,MAAM,EAAE,UAAU,EAAE,GAAG,OAAO,CAAA;gBAC9B,MAAM,SAAS,GAAG,IAAA,wBAAe,EAAC,IAAI,CAAC,CAAA;gBACvC,MAAM,KAAK,GAAG,IAAA,yBAAkB,EAAC,IAAI,CAAC,CAAA;gBACtC,MAAM,IAAI,GAAG,IAAA,wBAAiB,EAAC,IAAI,CAAC,CAAA;gBACpC,MAAM,aAAa,GAAG,IAAA,uBAAO,EAAC,KAAK,EAAE,SAAS,CAAC,CAAA;gBAC/C,MAAM,YAAY,GAAG,MAAM,UAAU,CAAC,IAAI,CACxC,SAAS,EACT,iBAAiB,EACjB;oBACE,aAAa;iBACd,CACF,CAAA;gBACD,OAAO,CAAC,UAAU,CAChB,OAAO,CAAC,SAAS,CAAC,sBAAsB,EAAE,gBAAgB,EAAE;oBAC1D,WAAW,EAAE,OAAO,CAAC,MAAM,EAAE;oBAC7B,IAAI;oBACJ,KAAK;oBACL,YAAY;iBACb,CAAC,CACH,CAAA;aACF;YAED,OAAO,CAAC,YAAY,CAAC,OAAO,CAAC,CAAA;QAC/B,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC;AAvCD,4BAuCC"}
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@@ -31,13 +31,12 @@ const react_1 = __importStar(require("react"));
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const material_1 = require("@mui/material");
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const simpleFeature_1 = __importDefault(require("@jbrowse/core/util/simpleFeature"));
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const util_1 = require("@jbrowse/core/util");
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const mobx_state_tree_1 = require("mobx-state-tree");
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const BaseFeatureDetail_1 = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
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const BreakendOptionDialog_1 = __importDefault(require("./BreakendOptionDialog"));
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function BreakendPanel(props) {
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const { model, locStrings, feature } = props;
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const session = (0, util_1.getSession)(model);
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const { pluginManager } = (0,
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const { pluginManager } = (0, util_1.getEnv)(session);
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const [breakpointDialog, setBreakpointDialog] = (0, react_1.useState)(false);
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let viewType;
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try {
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@@ -1 +1 @@
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{"version":3,"file":"BreakendPanel.js","sourceRoot":"","sources":["../../src/VariantFeatureWidget/BreakendPanel.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,uDAAuD;AACvD,+CAAuC;AACvC,4CAAgD;AAChD,qFAEyC;AACzC,
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{"version":3,"file":"BreakendPanel.js","sourceRoot":"","sources":["../../src/VariantFeatureWidget/BreakendPanel.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,uDAAuD;AACvD,+CAAuC;AACvC,4CAAgD;AAChD,qFAEyC;AACzC,6CAAuD;AACvD,yFAA4E;AAC5E,kFAAyD;AAEzD,SAAwB,aAAa,CAAC,KAIrC;IACC,MAAM,EAAE,KAAK,EAAE,UAAU,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;IAC5C,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,aAAa,EAAE,GAAG,IAAA,aAAM,EAAC,OAAO,CAAC,CAAA;IACzC,MAAM,CAAC,gBAAgB,EAAE,mBAAmB,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IAC/D,IAAI,QAAQ,CAAA;IAEZ,IAAI;QACF,QAAQ,GAAG,aAAa,CAAC,WAAW,CAAC,qBAAqB,CAAC,CAAA;KAC5D;IAAC,OAAO,CAAC,EAAE;QACV,SAAS;KACV;IAED,MAAM,aAAa,GAAG,IAAI,uBAAa,CAAC,OAAO,CAAC,CAAA;IAChD,OAAO,CACL,8BAAC,4BAAQ,OAAK,KAAK,EAAE,KAAK,EAAC,WAAW;QACpC,8BAAC,qBAAU,oDAAuD;QAClE,0CACG,UAAU,CAAC,GAAG,CAAC,SAAS,CAAC,EAAE,CAAC,CAC3B,sCAAI,GAAG,EAAE,GAAG,IAAI,CAAC,SAAS,CAAC,SAAS,CAAC,EAAE;YACrC,8BAAC,eAAI,IACH,IAAI,EAAC,GAAG,EACR,OAAO,EAAE,KAAK,CAAC,EAAE;;oBACf,KAAK,CAAC,cAAc,EAAE,CAAA;oBACtB,MAAM,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;oBACtB,IAAI;wBACF,IAAI,IAAI,EAAE;4BACR,MAAA,IAAI,CAAC,cAAc,qDAAG,SAAS,CAAC,CAAA;yBACjC;6BAAM;4BACL,MAAM,IAAI,KAAK,CACb,2DAA2D,CAC5D,CAAA;yBACF;qBACF;oBAAC,OAAO,CAAC,EAAE;wBACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;wBAChB,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,CAAA;qBACvB;gBACH,CAAC,IAEA,SAAS,SAAS,EAAE,CAChB,CACJ,CACN,CAAC,CACC;QACJ,QAAQ,CAAC,CAAC,CAAC,CACV;YACE,8BAAC,qBAAU,6DAEE;YACb,0CACG,UAAU,CAAC,GAAG,CAAC,SAAS,CAAC,EAAE,CAAC,CAC3B,sCAAI,GAAG,EAAE,GAAG,IAAI,CAAC,SAAS,CAAC,SAAS,CAAC,EAAE;gBACrC,8BAAC,eAAI,IACH,IAAI,EAAC,GAAG,EACR,OAAO,EAAE,KAAK,CAAC,EAAE;wBACf,KAAK,CAAC,cAAc,EAAE,CAAA;wBACtB,mBAAmB,CAAC,IAAI,CAAC,CAAA;oBAC3B,CAAC,IAEA,GAAG,OAAO,CAAC,OAAO,IAAI,OAAO,CAAC,KAAK,OAAO,SAAS,eAAe,CAC9D,CACJ,CACN,CAAC,CACC;YACJ,gBAAgB,CAAC,CAAC,CAAC,CAClB,8BAAC,8BAAoB,IACnB,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,aAAa,EACtB,QAAQ,EAAE,QAAQ,EAClB,WAAW,EAAE,GAAG,EAAE;oBAChB,mBAAmB,CAAC,KAAK,CAAC,CAAA;gBAC5B,CAAC,GACD,CACH,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAC,CAAC,CAAC,IAAI,CACC,CACZ,CAAA;AACH,CAAC;AAlFD,gCAkFC"}
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@@ -8,6 +8,8 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
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unformattedFeatureData: import("mobx-state-tree").IType<any, any, any>;
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view: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
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track: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
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trackId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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trackType: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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} & {
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type: import("mobx-state-tree").ISimpleType<"VariantFeatureWidget">;
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descriptions: import("mobx-state-tree").IType<any, any, any>;
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setFeatureData(featureData: Record<string, unknown>): void;
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setFormattedData(feat: Record<string, unknown>): void;
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setExtra(type?: string | undefined, trackId?: string | undefined): void;
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} & {
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track: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
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trackId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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trackType: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
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id: string;
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type: "BaseFeatureWidget";
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track: import("mobx-state-tree").ReferenceIdentifier | undefined;
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trackId: string | undefined;
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trackType: string | undefined;
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formattedFields: any;
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} & import("mobx-state-tree")._NotCustomized>;
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{"version":3,"file":"VcfAdapter.js","sourceRoot":"","sources":["../../src/VcfAdapter/VcfAdapter.ts"],"names":[],"mappings":";;;;;AAAA,yEAGgD;AAEhD,8CAAoD;AACpD,kDAA0D;AAE1D,8EAAoD;AACpD,2DAA6C;AAC7C,oDAA2B;AAC3B,+EAAsD;AAEtD,MAAM,OAAO,GAAG,CAAC,CAAS,EAAE,EAAE;IAC5B,MAAM,MAAM,GAAa,EAAE,CAAA;IAC3B,MAAM,IAAI,GAAa,EAAE,CAAA;IACzB,CAAC,CAAC,KAAK,CAAC,
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{"version":3,"file":"VcfAdapter.js","sourceRoot":"","sources":["../../src/VcfAdapter/VcfAdapter.ts"],"names":[],"mappings":";;;;;AAAA,yEAGgD;AAEhD,8CAAoD;AACpD,kDAA0D;AAE1D,8EAAoD;AACpD,2DAA6C;AAC7C,oDAA2B;AAC3B,+EAAsD;AAEtD,MAAM,OAAO,GAAG,CAAC,CAAS,EAAE,EAAE;IAC5B,MAAM,MAAM,GAAa,EAAE,CAAA;IAC3B,MAAM,IAAI,GAAa,EAAE,CAAA;IACzB,CAAC,CAAC,KAAK,CAAC,YAAY,CAAC;SAClB,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;SAClB,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;SAChB,OAAO,CAAC,IAAI,CAAC,EAAE;QACd,IAAI,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE;YACxB,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;SAClB;aAAM,IAAI,IAAI,EAAE;YACf,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;SAChB;IACH,CAAC,CAAC,CAAA;IACJ,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,CAAA;AACnD,CAAC,CAAA;AAED,SAAS,MAAM,CAAC,GAAW;IACzB,OAAO,GAAG,CAAC,CAAC,CAAC,KAAK,EAAE,IAAI,GAAG,CAAC,CAAC,CAAC,KAAK,GAAG,IAAI,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,CAAA;AACxD,CAAC;AAED,MAAqB,UAAW,SAAQ,oCAAsB;IAQrD,KAAK,CAAC,SAAS;QACpB,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QACrC,OAAO,MAAM,CAAA;IACf,CAAC;IAED,KAAK,CAAC,WAAW;QACf,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QACrC,MAAM,MAAM,GAAG,IAAI,aAAG,CAAC,EAAE,MAAM,EAAE,MAAM,EAAE,CAAC,CAAA;QAC1C,OAAO,MAAM,CAAC,WAAW,EAAE,CAAA;IAC7B,CAAC;IAED,uCAAuC;IAChC,KAAK,CAAC,MAAM;QACjB,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,GAAG,GAAG,MAAM,IAAA,iBAAY,EAAC,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,EAAE,EAAE,CAAC,CAAC,QAAQ,EAAE,CAAA;QAE1E,MAAM,MAAM,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,MAAM,IAAA,uBAAK,EAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAA;QAEnD,2CAA2C;QAC3C,IAAI,MAAM,CAAC,MAAM,GAAG,SAAW,EAAE;YAC/B,MAAM,IAAI,KAAK,CAAC,4CAA4C,CAAC,CAAA;SAC9D;QAED,MAAM,GAAG,GAAG,IAAI,WAAW,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;QAC5C,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,GAAG,OAAO,CAAC,GAAG,CAAC,CAAA;QAEtC,MAAM,YAAY,GAAG,KAAK;aACvB,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,EAAE,EAAE;;YAChB,MAAM,CAAC,OAAO,EAAE,MAAM,EAAE,AAAD,EAAG,GAAG,EAAE,AAAD,EAAG,AAAD,EAAG,AAAD,EAAG,IAAI,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;YAC7D,MAAM,KAAK,GAAG,CAAC,MAAM,GAAG,CAAC,CAAA;YACzB,MAAM,GAAG,GAAG,CAAC,CAAC,CAAA,MAAA,IAAI,CAAC,KAAK,CAAC,WAAW,CAAC,0CAAG,CAAC,EAAE,IAAI,EAAE,KAAI,KAAK,GAAG,GAAG,CAAC,MAAM,CAAC,CAAA;YACxE,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,EAAE,EAAE,CAAA;QAC1C,CAAC,CAAC;aACD,MAAM,CAAC,CAAC,GAAG,EAAE,GAAG,EAAE,EAAE;YACnB,MAAM,GAAG,GAAG,GAAG,CAAC,OAAO,CAAA;YACvB,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE;gBACb,GAAG,CAAC,GAAG,CAAC,GAAG,IAAI,uBAAY,EAAE,CAAA;aAC9B;YACD,GAAG,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC,CAAC,GAAG,CAAC,KAAK,EAAE,GAAG,CAAC,GAAG,CAAC,EAAE,GAAG,CAAC,CAAA;YAC1C,OAAO,GAAG,CAAA;QACZ,CAAC,EAAE,EAAkC,CAAC,CAAA;QAExC,OAAO,EAAE,MAAM,EAAE,YAAY,EAAE,CAAA;IACjC,CAAC;IAEM,KAAK,CAAC,KAAK;QAChB,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE;YACrB,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBACzC,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;gBAC5B,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,WAAW,CAAA;IACzB,CAAC;IAEM,KAAK,CAAC,WAAW,CAAC,IAAiB,EAAE;QAC1C,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QAC3C,OAAO,MAAM,CAAC,IAAI,CAAC,YAAY,CAAC,CAAA;IAClC,CAAC;IAEM,WAAW,CAAC,MAAc,EAAE,OAAoB,EAAE;QACvD,OAAO,IAAA,uBAAgB,EAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;;YAChD,IAAI;gBACF,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,OAAO,EAAE,GAAG,MAAM,CAAA;gBACtC,MAAM,EAAE,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;gBACnD,MAAM,MAAM,GAAG,IAAI,aAAG,CAAC,EAAE,MAAM,EAAE,MAAM,EAAE,CAAC,CAAA;gBAC1C,MAAA,YAAY,CAAC,OAAO,CAAC,0CAAE,MAAM,CAAC,CAAC,KAAK,EAAE,GAAG,CAAC,EAAE,OAAO,CAAC,CAAC,CAAC,EAAE,CACtD,QAAQ,CAAC,IAAI,CACX,IAAI,oBAAU,CAAC;oBACb,OAAO,EAAE,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC;oBACjC,MAAM;oBACN,EAAE,EAAE,GAAG,IAAI,CAAC,EAAE,IAAI,CAAC,CAAC,EAAE,EAAE;iBACzB,CAAC,CACH,CACF,CAAA;gBACD,QAAQ,CAAC,QAAQ,EAAE,CAAA;aACpB;YAAC,OAAO,CAAC,EAAE;gBACV,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;aAClB;QACH,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,CAAA;IACjB,CAAC;IAEM,aAAa,KAAU,CAAC;;AA1FjC,6BA2FC;AA1Fe,uBAAY,GAAG,CAAC,aAAa,EAAE,aAAa,CAAC,CAAA"}
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{"version":3,"file":"VcfTabixAdapter.js","sourceRoot":"","sources":["../../src/VcfTabixAdapter/VcfTabixAdapter.ts"],"names":[],"mappings":";;;;;AAAA,yEAGgD;AAMhD,8CAAoD;AACpD,6CAAoD;AACpD,kDAA0D;AAE1D,uCAA8C;AAC9C,oDAAiC;AAEjC,+DAA4D;AAC5D,8DAAqC;AAGrC,eAAqB,SAAQ,oCAAsB;IAOzC,KAAK,CAAC,YAAY;QACxB,MAAM,aAAa,GAAG,IAAA,8BAAc,EAAC,IAAI,CAAC,MAAM,EAAE,eAAe,CAAC,CAAA;QAClE,MAAM,QAAQ,GAAG,IAAA,8BAAc,EAAC,IAAI,CAAC,MAAM,EAAE,CAAC,OAAO,EAAE,UAAU,CAAC,CAAC,CAAA;QACnE,MAAM,SAAS,GAAG,IAAA,8BAAc,EAAC,IAAI,CAAC,MAAM,EAAE,CAAC,OAAO,EAAE,WAAW,CAAC,CAAC,CAAA;QAErE,MAAM,UAAU,GAAG,IAAA,iBAAY,EAC7B,aAA6B,EAC7B,IAAI,CAAC,aAAa,CACnB,CAAA;QACD,MAAM,KAAK,GAAG,SAAS,KAAK,KAAK,CAAA;QACjC,MAAM,GAAG,GAAG,IAAI,wBAAgB,CAAC;YAC/B,UAAU;YACV,aAAa,EAAE,KAAK;gBAClB,CAAC,CAAC,IAAA,iBAAY,EAAC,QAAQ,EAAE,IAAI,CAAC,aAAa,CAAC;gBAC5C,CAAC,CAAC,SAAS;YACb,aAAa,EAAE,CAAC,KAAK;gBACnB,CAAC,CAAC,IAAA,iBAAY,EAAC,QAAQ,EAAE,IAAI,CAAC,aAAa,CAAC;gBAC5C,CAAC,CAAC,SAAS;YACb,cAAc,EAAE,EAAE,GAAG,CAAC,IAAI,EAAE;YAC5B,cAAc,EAAE,UAAU;SAC3B,CAAC,CAAA;QAEF,MAAM,MAAM,GAAG,MAAM,GAAG,CAAC,SAAS,EAAE,CAAA;QACpC,OAAO;YACL,UAAU;YACV,GAAG;YACH,MAAM,EAAE,IAAI,aAAS,CAAC,EAAE,MAAM,EAAE,CAAC;SAClC,CAAA;IACH,CAAC;IAES,KAAK,CAAC,SAAS;QACvB,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE;YACpB,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,YAAY,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC9C,IAAI,CAAC,UAAU,GAAG,SAAS,CAAA;gBAC3B,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,UAAU,CAAA;IACxB,CAAC;IAEM,KAAK,CAAC,WAAW,CAAC,OAAoB,EAAE;QAC7C,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,OAAO,GAAG,CAAC,yBAAyB,CAAC,IAAI,CAAC,CAAA;IAC5C,CAAC;IAED,KAAK,CAAC,SAAS;QACb,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,OAAO,GAAG,CAAC,SAAS,EAAE,CAAA;IACxB,CAAC;IAED,KAAK,CAAC,WAAW;QACf,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACzC,OAAO,MAAM,CAAC,WAAW,EAAE,CAAA;IAC7B,CAAC;IAEM,WAAW,CAAC,KAAuB,EAAE,OAAoB,EAAE;QAChE,OAAO,IAAA,uBAAgB,EAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,KAAK,CAAA;YACrC,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;YAC9C,MAAM,GAAG,CAAC,QAAQ,CAAC,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE;gBACtC,YAAY,EAAE,CAAC,
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{"version":3,"file":"VcfTabixAdapter.js","sourceRoot":"","sources":["../../src/VcfTabixAdapter/VcfTabixAdapter.ts"],"names":[],"mappings":";;;;;AAAA,yEAGgD;AAMhD,8CAAoD;AACpD,6CAAoD;AACpD,kDAA0D;AAE1D,uCAA8C;AAC9C,oDAAiC;AAEjC,+DAA4D;AAC5D,8DAAqC;AAGrC,eAAqB,SAAQ,oCAAsB;IAOzC,KAAK,CAAC,YAAY;QACxB,MAAM,aAAa,GAAG,IAAA,8BAAc,EAAC,IAAI,CAAC,MAAM,EAAE,eAAe,CAAC,CAAA;QAClE,MAAM,QAAQ,GAAG,IAAA,8BAAc,EAAC,IAAI,CAAC,MAAM,EAAE,CAAC,OAAO,EAAE,UAAU,CAAC,CAAC,CAAA;QACnE,MAAM,SAAS,GAAG,IAAA,8BAAc,EAAC,IAAI,CAAC,MAAM,EAAE,CAAC,OAAO,EAAE,WAAW,CAAC,CAAC,CAAA;QAErE,MAAM,UAAU,GAAG,IAAA,iBAAY,EAC7B,aAA6B,EAC7B,IAAI,CAAC,aAAa,CACnB,CAAA;QACD,MAAM,KAAK,GAAG,SAAS,KAAK,KAAK,CAAA;QACjC,MAAM,GAAG,GAAG,IAAI,wBAAgB,CAAC;YAC/B,UAAU;YACV,aAAa,EAAE,KAAK;gBAClB,CAAC,CAAC,IAAA,iBAAY,EAAC,QAAQ,EAAE,IAAI,CAAC,aAAa,CAAC;gBAC5C,CAAC,CAAC,SAAS;YACb,aAAa,EAAE,CAAC,KAAK;gBACnB,CAAC,CAAC,IAAA,iBAAY,EAAC,QAAQ,EAAE,IAAI,CAAC,aAAa,CAAC;gBAC5C,CAAC,CAAC,SAAS;YACb,cAAc,EAAE,EAAE,GAAG,CAAC,IAAI,EAAE;YAC5B,cAAc,EAAE,UAAU;SAC3B,CAAC,CAAA;QAEF,MAAM,MAAM,GAAG,MAAM,GAAG,CAAC,SAAS,EAAE,CAAA;QACpC,OAAO;YACL,UAAU;YACV,GAAG;YACH,MAAM,EAAE,IAAI,aAAS,CAAC,EAAE,MAAM,EAAE,CAAC;SAClC,CAAA;IACH,CAAC;IAES,KAAK,CAAC,SAAS;QACvB,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE;YACpB,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,YAAY,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC9C,IAAI,CAAC,UAAU,GAAG,SAAS,CAAA;gBAC3B,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,UAAU,CAAA;IACxB,CAAC;IAEM,KAAK,CAAC,WAAW,CAAC,OAAoB,EAAE;QAC7C,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,OAAO,GAAG,CAAC,yBAAyB,CAAC,IAAI,CAAC,CAAA;IAC5C,CAAC;IAED,KAAK,CAAC,SAAS;QACb,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,OAAO,GAAG,CAAC,SAAS,EAAE,CAAA;IACxB,CAAC;IAED,KAAK,CAAC,WAAW;QACf,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACzC,OAAO,MAAM,CAAC,WAAW,EAAE,CAAA;IAC7B,CAAC;IAEM,WAAW,CAAC,KAAuB,EAAE,OAAoB,EAAE;QAChE,OAAO,IAAA,uBAAgB,EAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,KAAK,CAAA;YACrC,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;YAC9C,MAAM,GAAG,CAAC,QAAQ,CAAC,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE;gBACtC,YAAY,EAAE,CAAC,IAAI,EAAE,UAAU,EAAE,EAAE;oBACjC,QAAQ,CAAC,IAAI,CACX,IAAI,oBAAU,CAAC;wBACb,OAAO,EAAE,MAAM,CAAC,SAAS,CAAC,IAAI,CAAC;wBAC/B,MAAM;wBACN,EAAE,EAAE,GAAG,IAAI,CAAC,EAAE,QAAQ,UAAU,EAAE;qBACnC,CAAC,CACH,CAAA;gBACH,CAAC;gBACD,GAAG,IAAI;aACR,CAAC,CAAA;YACF,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,CAAA;IACjB,CAAC;IAED;;;;;;;;;;;;;OAaG;IACI,4BAA4B,CACjC,OAAiB,EACjB,OAAoB,EAAE;QAEtB,OAAO,IAAA,uBAAgB,EAAU,KAAK,EAAE,QAA2B,EAAE,EAAE;YACrE,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;YAEtC,aAAa;YACb,MAAM,KAAK,GAAG,MAAM,IAAA,sBAAe,EAAC,OAAO,EAAE,GAAG,CAAC,KAAK,CAAC,CAAA;YACvD,MAAM,EAAE,UAAU,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;YAC7C,MAAM,IAAI,GAAG,MAAM,UAAU,CAAC,IAAI,EAAE,CAAA;YACpC,IAAI,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,KAAK,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,GAAG,CAAC,CAAA;YAC/C,IAAI,GAAG,GAAG,GAAG,EAAE;gBACb,yDAAyD;gBACzD,GAAG,GAAG,GAAG,CAAA;aACV;YACD,IAAI,GAAG,GAAG,EAAE,EAAE;gBACZ,OAAO,CAAC,IAAI,CACV,yCAAyC,GAAG,6DAA6D,CAC1G,CAAA;aACF;YACD,KAAK,CAAC,4BAA4B,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAA;QACvE,CAAC,CAAC,CAAA;IACJ,CAAC;IAEM,aAAa,EAAC,gBAAgB,IAAS,CAAC;CAChD;AA1HD,4BA0HC"}
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|
+
const descriptions = await rpcManager.call(sessionId, 'CoreGetMetadata', {
|
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22
|
adapterConfig,
|
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22
23
|
});
|
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-
|
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|
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session.showWidget(session.addWidget('VariantFeatureWidget', 'variantFeature', {
|
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|
featureData: feature.toJSON(),
|
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view
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-
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view,
|
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track,
|
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descriptions,
|
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|
+
}));
|
|
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30
|
}
|
|
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31
|
session.setSelection(feature);
|
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},
|
|
@@ -1 +1 @@
|
|
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1
|
-
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/LinearVariantDisplay/model.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,sBAAsB,EAAE,MAAM,6BAA6B,CAAA;AAC7E,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAA;AAC3D,OAAO,EACL,kBAAkB,EAClB,UAAU,EACV,iBAAiB,EACjB,yBAAyB,GAC1B,MAAM,oBAAoB,CAAA;AAG3B,OAAO,EAAE,8BAA8B,EAAE,MAAM,oCAAoC,CAAA;AACnF,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AAGvC,MAAM,CAAC,OAAO,WAAW,YAA6C;IACpE,OAAO,KAAK;SACT,OAAO,CACN,sBAAsB,EACtB,8BAA8B,CAAC,YAAY,CAAC,EAC5C,KAAK,CAAC,KAAK,CAAC;QACV,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,sBAAsB,CAAC;QAC3C,aAAa,EAAE,sBAAsB,CAAC,YAAY,CAAC;KACpD,CAAC,CACH;SACA,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,KAAK,CAAC,aAAa,CAAC,OAAgB;YAClC,MAAM,OAAO,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YAChC,IAAI,yBAAyB,CAAC,OAAO,CAAC,EAAE;gBACtC,MAAM,EAAE,UAAU,EAAE,GAAG,OAAO,CAAA;gBAC9B,MAAM,SAAS,GAAG,eAAe,CAAC,IAAI,CAAC,CAAA;gBACvC,MAAM,KAAK,GAAG,kBAAkB,CAAC,IAAI,CAAC,CAAA;gBACtC,MAAM,aAAa,GAAG,OAAO,CAAC,KAAK,EAAE,SAAS,CAAC,CAAA;gBAC/C,MAAM,
|
|
1
|
+
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/LinearVariantDisplay/model.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,sBAAsB,EAAE,MAAM,6BAA6B,CAAA;AAC7E,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAA;AAC3D,OAAO,EACL,kBAAkB,EAClB,UAAU,EACV,iBAAiB,EACjB,yBAAyB,GAC1B,MAAM,oBAAoB,CAAA;AAG3B,OAAO,EAAE,8BAA8B,EAAE,MAAM,oCAAoC,CAAA;AACnF,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AAGvC,MAAM,CAAC,OAAO,WAAW,YAA6C;IACpE,OAAO,KAAK;SACT,OAAO,CACN,sBAAsB,EACtB,8BAA8B,CAAC,YAAY,CAAC,EAC5C,KAAK,CAAC,KAAK,CAAC;QACV,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,sBAAsB,CAAC;QAC3C,aAAa,EAAE,sBAAsB,CAAC,YAAY,CAAC;KACpD,CAAC,CACH;SACA,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,KAAK,CAAC,aAAa,CAAC,OAAgB;YAClC,MAAM,OAAO,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YAChC,IAAI,yBAAyB,CAAC,OAAO,CAAC,EAAE;gBACtC,MAAM,EAAE,UAAU,EAAE,GAAG,OAAO,CAAA;gBAC9B,MAAM,SAAS,GAAG,eAAe,CAAC,IAAI,CAAC,CAAA;gBACvC,MAAM,KAAK,GAAG,kBAAkB,CAAC,IAAI,CAAC,CAAA;gBACtC,MAAM,IAAI,GAAG,iBAAiB,CAAC,IAAI,CAAC,CAAA;gBACpC,MAAM,aAAa,GAAG,OAAO,CAAC,KAAK,EAAE,SAAS,CAAC,CAAA;gBAC/C,MAAM,YAAY,GAAG,MAAM,UAAU,CAAC,IAAI,CACxC,SAAS,EACT,iBAAiB,EACjB;oBACE,aAAa;iBACd,CACF,CAAA;gBACD,OAAO,CAAC,UAAU,CAChB,OAAO,CAAC,SAAS,CAAC,sBAAsB,EAAE,gBAAgB,EAAE;oBAC1D,WAAW,EAAE,OAAO,CAAC,MAAM,EAAE;oBAC7B,IAAI;oBACJ,KAAK;oBACL,YAAY;iBACb,CAAC,CACH,CAAA;aACF;YAED,OAAO,CAAC,YAAY,CAAC,OAAO,CAAC,CAAA;QAC/B,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC"}
|
|
@@ -2,8 +2,7 @@
|
|
|
2
2
|
import React, { useState } from 'react';
|
|
3
3
|
import { Link, Typography } from '@mui/material';
|
|
4
4
|
import SimpleFeature from '@jbrowse/core/util/simpleFeature';
|
|
5
|
-
import { getSession } from '@jbrowse/core/util';
|
|
6
|
-
import { getEnv } from 'mobx-state-tree';
|
|
5
|
+
import { getEnv, getSession } from '@jbrowse/core/util';
|
|
7
6
|
import { BaseCard } from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail';
|
|
8
7
|
import BreakendOptionDialog from './BreakendOptionDialog';
|
|
9
8
|
export default function BreakendPanel(props) {
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"BreakendPanel.js","sourceRoot":"","sources":["../../src/VariantFeatureWidget/BreakendPanel.tsx"],"names":[],"mappings":"AAAA,uDAAuD;AACvD,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAChD,OAAO,aAEN,MAAM,kCAAkC,CAAA;AACzC,OAAO,EAAE,
|
|
1
|
+
{"version":3,"file":"BreakendPanel.js","sourceRoot":"","sources":["../../src/VariantFeatureWidget/BreakendPanel.tsx"],"names":[],"mappings":"AAAA,uDAAuD;AACvD,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAChD,OAAO,aAEN,MAAM,kCAAkC,CAAA;AACzC,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AACvD,OAAO,EAAE,QAAQ,EAAE,MAAM,mDAAmD,CAAA;AAC5E,OAAO,oBAAoB,MAAM,wBAAwB,CAAA;AAEzD,MAAM,CAAC,OAAO,UAAU,aAAa,CAAC,KAIrC;IACC,MAAM,EAAE,KAAK,EAAE,UAAU,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;IAC5C,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,OAAO,CAAC,CAAA;IACzC,MAAM,CAAC,gBAAgB,EAAE,mBAAmB,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IAC/D,IAAI,QAAQ,CAAA;IAEZ,IAAI;QACF,QAAQ,GAAG,aAAa,CAAC,WAAW,CAAC,qBAAqB,CAAC,CAAA;KAC5D;IAAC,OAAO,CAAC,EAAE;QACV,SAAS;KACV;IAED,MAAM,aAAa,GAAG,IAAI,aAAa,CAAC,OAAO,CAAC,CAAA;IAChD,OAAO,CACL,oBAAC,QAAQ,OAAK,KAAK,EAAE,KAAK,EAAC,WAAW;QACpC,oBAAC,UAAU,oDAAuD;QAClE,gCACG,UAAU,CAAC,GAAG,CAAC,SAAS,CAAC,EAAE,CAAC,CAC3B,4BAAI,GAAG,EAAE,GAAG,IAAI,CAAC,SAAS,CAAC,SAAS,CAAC,EAAE;YACrC,oBAAC,IAAI,IACH,IAAI,EAAC,GAAG,EACR,OAAO,EAAE,KAAK,CAAC,EAAE;;oBACf,KAAK,CAAC,cAAc,EAAE,CAAA;oBACtB,MAAM,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;oBACtB,IAAI;wBACF,IAAI,IAAI,EAAE;4BACR,MAAA,IAAI,CAAC,cAAc,qDAAG,SAAS,CAAC,CAAA;yBACjC;6BAAM;4BACL,MAAM,IAAI,KAAK,CACb,2DAA2D,CAC5D,CAAA;yBACF;qBACF;oBAAC,OAAO,CAAC,EAAE;wBACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;wBAChB,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,CAAA;qBACvB;gBACH,CAAC,IAEA,SAAS,SAAS,EAAE,CAChB,CACJ,CACN,CAAC,CACC;QACJ,QAAQ,CAAC,CAAC,CAAC,CACV;YACE,oBAAC,UAAU,6DAEE;YACb,gCACG,UAAU,CAAC,GAAG,CAAC,SAAS,CAAC,EAAE,CAAC,CAC3B,4BAAI,GAAG,EAAE,GAAG,IAAI,CAAC,SAAS,CAAC,SAAS,CAAC,EAAE;gBACrC,oBAAC,IAAI,IACH,IAAI,EAAC,GAAG,EACR,OAAO,EAAE,KAAK,CAAC,EAAE;wBACf,KAAK,CAAC,cAAc,EAAE,CAAA;wBACtB,mBAAmB,CAAC,IAAI,CAAC,CAAA;oBAC3B,CAAC,IAEA,GAAG,OAAO,CAAC,OAAO,IAAI,OAAO,CAAC,KAAK,OAAO,SAAS,eAAe,CAC9D,CACJ,CACN,CAAC,CACC;YACJ,gBAAgB,CAAC,CAAC,CAAC,CAClB,oBAAC,oBAAoB,IACnB,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,aAAa,EACtB,QAAQ,EAAE,QAAQ,EAClB,WAAW,EAAE,GAAG,EAAE;oBAChB,mBAAmB,CAAC,KAAK,CAAC,CAAA;gBAC5B,CAAC,GACD,CACH,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAC,CAAC,CAAC,IAAI,CACC,CACZ,CAAA;AACH,CAAC"}
|
|
@@ -8,6 +8,8 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
8
8
|
unformattedFeatureData: import("mobx-state-tree").IType<any, any, any>;
|
|
9
9
|
view: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
10
10
|
track: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
11
|
+
trackId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
12
|
+
trackType: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
11
13
|
} & {
|
|
12
14
|
type: import("mobx-state-tree").ISimpleType<"VariantFeatureWidget">;
|
|
13
15
|
descriptions: import("mobx-state-tree").IType<any, any, any>;
|
|
@@ -15,6 +17,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
15
17
|
setFeatureData(featureData: Record<string, unknown>): void;
|
|
16
18
|
clearFeatureData(): void;
|
|
17
19
|
setFormattedData(feat: Record<string, unknown>): void;
|
|
20
|
+
setExtra(type?: string | undefined, trackId?: string | undefined): void;
|
|
18
21
|
} & {
|
|
19
22
|
afterCreate(): void;
|
|
20
23
|
}, {
|
|
@@ -27,11 +30,15 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
27
30
|
unformattedFeatureData: import("mobx-state-tree").IType<any, any, any>;
|
|
28
31
|
view: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
29
32
|
track: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
33
|
+
trackId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
34
|
+
trackType: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
30
35
|
}>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
|
|
31
36
|
id: string;
|
|
32
37
|
type: "BaseFeatureWidget";
|
|
33
38
|
track: import("mobx-state-tree").ReferenceIdentifier | undefined;
|
|
34
39
|
view: import("mobx-state-tree").ReferenceIdentifier | undefined;
|
|
40
|
+
trackId: string | undefined;
|
|
41
|
+
trackType: string | undefined;
|
|
35
42
|
formattedFields: any;
|
|
36
43
|
finalizedFeatureData: any;
|
|
37
44
|
} & import("mobx-state-tree")._NotCustomized>;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"VcfAdapter.js","sourceRoot":"","sources":["../../src/VcfAdapter/VcfAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAEhD,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAE1D,OAAO,YAAY,MAAM,2BAA2B,CAAA;AACpD,OAAO,EAAE,KAAK,EAAE,MAAM,uBAAuB,CAAA;AAC7C,OAAO,GAAG,MAAM,WAAW,CAAA;AAC3B,OAAO,UAAU,MAAM,+BAA+B,CAAA;AAEtD,MAAM,OAAO,GAAG,CAAC,CAAS,EAAE,EAAE;IAC5B,MAAM,MAAM,GAAa,EAAE,CAAA;IAC3B,MAAM,IAAI,GAAa,EAAE,CAAA;IACzB,CAAC,CAAC,KAAK,CAAC,
|
|
1
|
+
{"version":3,"file":"VcfAdapter.js","sourceRoot":"","sources":["../../src/VcfAdapter/VcfAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAEhD,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAE1D,OAAO,YAAY,MAAM,2BAA2B,CAAA;AACpD,OAAO,EAAE,KAAK,EAAE,MAAM,uBAAuB,CAAA;AAC7C,OAAO,GAAG,MAAM,WAAW,CAAA;AAC3B,OAAO,UAAU,MAAM,+BAA+B,CAAA;AAEtD,MAAM,OAAO,GAAG,CAAC,CAAS,EAAE,EAAE;IAC5B,MAAM,MAAM,GAAa,EAAE,CAAA;IAC3B,MAAM,IAAI,GAAa,EAAE,CAAA;IACzB,CAAC,CAAC,KAAK,CAAC,YAAY,CAAC;SAClB,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;SAClB,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;SAChB,OAAO,CAAC,IAAI,CAAC,EAAE;QACd,IAAI,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE;YACxB,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;SAClB;aAAM,IAAI,IAAI,EAAE;YACf,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;SAChB;IACH,CAAC,CAAC,CAAA;IACJ,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,CAAA;AACnD,CAAC,CAAA;AAED,SAAS,MAAM,CAAC,GAAW;IACzB,OAAO,GAAG,CAAC,CAAC,CAAC,KAAK,EAAE,IAAI,GAAG,CAAC,CAAC,CAAC,KAAK,GAAG,IAAI,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,CAAA;AACxD,CAAC;AAED,MAAM,CAAC,OAAO,OAAO,UAAW,SAAQ,sBAAsB;IAQrD,KAAK,CAAC,SAAS;QACpB,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QACrC,OAAO,MAAM,CAAA;IACf,CAAC;IAED,KAAK,CAAC,WAAW;QACf,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QACrC,MAAM,MAAM,GAAG,IAAI,GAAG,CAAC,EAAE,MAAM,EAAE,MAAM,EAAE,CAAC,CAAA;QAC1C,OAAO,MAAM,CAAC,WAAW,EAAE,CAAA;IAC7B,CAAC;IAED,uCAAuC;IAChC,KAAK,CAAC,MAAM;QACjB,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,GAAG,GAAG,MAAM,YAAY,CAAC,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,EAAE,EAAE,CAAC,CAAC,QAAQ,EAAE,CAAA;QAE1E,MAAM,MAAM,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,MAAM,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAA;QAEnD,2CAA2C;QAC3C,IAAI,MAAM,CAAC,MAAM,GAAG,SAAW,EAAE;YAC/B,MAAM,IAAI,KAAK,CAAC,4CAA4C,CAAC,CAAA;SAC9D;QAED,MAAM,GAAG,GAAG,IAAI,WAAW,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;QAC5C,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,GAAG,OAAO,CAAC,GAAG,CAAC,CAAA;QAEtC,MAAM,YAAY,GAAG,KAAK;aACvB,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,EAAE,EAAE;;YAChB,MAAM,CAAC,OAAO,EAAE,MAAM,EAAE,AAAD,EAAG,GAAG,EAAE,AAAD,EAAG,AAAD,EAAG,AAAD,EAAG,IAAI,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;YAC7D,MAAM,KAAK,GAAG,CAAC,MAAM,GAAG,CAAC,CAAA;YACzB,MAAM,GAAG,GAAG,CAAC,CAAC,CAAA,MAAA,IAAI,CAAC,KAAK,CAAC,WAAW,CAAC,0CAAG,CAAC,EAAE,IAAI,EAAE,KAAI,KAAK,GAAG,GAAG,CAAC,MAAM,CAAC,CAAA;YACxE,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,EAAE,EAAE,CAAA;QAC1C,CAAC,CAAC;aACD,MAAM,CAAC,CAAC,GAAG,EAAE,GAAG,EAAE,EAAE;YACnB,MAAM,GAAG,GAAG,GAAG,CAAC,OAAO,CAAA;YACvB,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE;gBACb,GAAG,CAAC,GAAG,CAAC,GAAG,IAAI,YAAY,EAAE,CAAA;aAC9B;YACD,GAAG,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC,CAAC,GAAG,CAAC,KAAK,EAAE,GAAG,CAAC,GAAG,CAAC,EAAE,GAAG,CAAC,CAAA;YAC1C,OAAO,GAAG,CAAA;QACZ,CAAC,EAAE,EAAkC,CAAC,CAAA;QAExC,OAAO,EAAE,MAAM,EAAE,YAAY,EAAE,CAAA;IACjC,CAAC;IAEM,KAAK,CAAC,KAAK;QAChB,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE;YACrB,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBACzC,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;gBAC5B,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,WAAW,CAAA;IACzB,CAAC;IAEM,KAAK,CAAC,WAAW,CAAC,IAAiB,EAAE;QAC1C,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QAC3C,OAAO,MAAM,CAAC,IAAI,CAAC,YAAY,CAAC,CAAA;IAClC,CAAC;IAEM,WAAW,CAAC,MAAc,EAAE,OAAoB,EAAE;QACvD,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;;YAChD,IAAI;gBACF,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,OAAO,EAAE,GAAG,MAAM,CAAA;gBACtC,MAAM,EAAE,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;gBACnD,MAAM,MAAM,GAAG,IAAI,GAAG,CAAC,EAAE,MAAM,EAAE,MAAM,EAAE,CAAC,CAAA;gBAC1C,MAAA,YAAY,CAAC,OAAO,CAAC,0CAAE,MAAM,CAAC,CAAC,KAAK,EAAE,GAAG,CAAC,EAAE,OAAO,CAAC,CAAC,CAAC,EAAE,CACtD,QAAQ,CAAC,IAAI,CACX,IAAI,UAAU,CAAC;oBACb,OAAO,EAAE,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC;oBACjC,MAAM;oBACN,EAAE,EAAE,GAAG,IAAI,CAAC,EAAE,IAAI,CAAC,CAAC,EAAE,EAAE;iBACzB,CAAC,CACH,CACF,CAAA;gBACD,QAAQ,CAAC,QAAQ,EAAE,CAAA;aACpB;YAAC,OAAO,CAAC,EAAE;gBACV,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;aAClB;QACH,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,CAAA;IACjB,CAAC;IAEM,aAAa,KAAU,CAAC;;AAzFjB,uBAAY,GAAG,CAAC,aAAa,EAAE,aAAa,CAAC,CAAA"}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"VcfTabixAdapter.js","sourceRoot":"","sources":["../../src/VcfTabixAdapter/VcfTabixAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAMhD,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,eAAe,EAAE,MAAM,oBAAoB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAE1D,OAAO,EAAE,gBAAgB,EAAE,MAAM,aAAa,CAAA;AAC9C,OAAO,SAAS,MAAM,WAAW,CAAA;AAEjC,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAA;AAC5D,OAAO,UAAU,MAAM,cAAc,CAAA;AAGrC,MAAM,CAAC,OAAO,MAAO,SAAQ,sBAAsB;IAOzC,KAAK,CAAC,YAAY;QACxB,MAAM,aAAa,GAAG,cAAc,CAAC,IAAI,CAAC,MAAM,EAAE,eAAe,CAAC,CAAA;QAClE,MAAM,QAAQ,GAAG,cAAc,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,OAAO,EAAE,UAAU,CAAC,CAAC,CAAA;QACnE,MAAM,SAAS,GAAG,cAAc,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,OAAO,EAAE,WAAW,CAAC,CAAC,CAAA;QAErE,MAAM,UAAU,GAAG,YAAY,CAC7B,aAA6B,EAC7B,IAAI,CAAC,aAAa,CACnB,CAAA;QACD,MAAM,KAAK,GAAG,SAAS,KAAK,KAAK,CAAA;QACjC,MAAM,GAAG,GAAG,IAAI,gBAAgB,CAAC;YAC/B,UAAU;YACV,aAAa,EAAE,KAAK;gBAClB,CAAC,CAAC,YAAY,CAAC,QAAQ,EAAE,IAAI,CAAC,aAAa,CAAC;gBAC5C,CAAC,CAAC,SAAS;YACb,aAAa,EAAE,CAAC,KAAK;gBACnB,CAAC,CAAC,YAAY,CAAC,QAAQ,EAAE,IAAI,CAAC,aAAa,CAAC;gBAC5C,CAAC,CAAC,SAAS;YACb,cAAc,EAAE,EAAE,GAAG,CAAC,IAAI,EAAE;YAC5B,cAAc,EAAE,UAAU;SAC3B,CAAC,CAAA;QAEF,MAAM,MAAM,GAAG,MAAM,GAAG,CAAC,SAAS,EAAE,CAAA;QACpC,OAAO;YACL,UAAU;YACV,GAAG;YACH,MAAM,EAAE,IAAI,SAAS,CAAC,EAAE,MAAM,EAAE,CAAC;SAClC,CAAA;IACH,CAAC;IAES,KAAK,CAAC,SAAS;QACvB,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE;YACpB,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,YAAY,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC9C,IAAI,CAAC,UAAU,GAAG,SAAS,CAAA;gBAC3B,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,UAAU,CAAA;IACxB,CAAC;IAEM,KAAK,CAAC,WAAW,CAAC,OAAoB,EAAE;QAC7C,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,OAAO,GAAG,CAAC,yBAAyB,CAAC,IAAI,CAAC,CAAA;IAC5C,CAAC;IAED,KAAK,CAAC,SAAS;QACb,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,OAAO,GAAG,CAAC,SAAS,EAAE,CAAA;IACxB,CAAC;IAED,KAAK,CAAC,WAAW;QACf,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACzC,OAAO,MAAM,CAAC,WAAW,EAAE,CAAA;IAC7B,CAAC;IAEM,WAAW,CAAC,KAAuB,EAAE,OAAoB,EAAE;QAChE,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,KAAK,CAAA;YACrC,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;YAC9C,MAAM,GAAG,CAAC,QAAQ,CAAC,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE;gBACtC,YAAY,EAAE,CAAC,
|
|
1
|
+
{"version":3,"file":"VcfTabixAdapter.js","sourceRoot":"","sources":["../../src/VcfTabixAdapter/VcfTabixAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAMhD,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,eAAe,EAAE,MAAM,oBAAoB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAE1D,OAAO,EAAE,gBAAgB,EAAE,MAAM,aAAa,CAAA;AAC9C,OAAO,SAAS,MAAM,WAAW,CAAA;AAEjC,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAA;AAC5D,OAAO,UAAU,MAAM,cAAc,CAAA;AAGrC,MAAM,CAAC,OAAO,MAAO,SAAQ,sBAAsB;IAOzC,KAAK,CAAC,YAAY;QACxB,MAAM,aAAa,GAAG,cAAc,CAAC,IAAI,CAAC,MAAM,EAAE,eAAe,CAAC,CAAA;QAClE,MAAM,QAAQ,GAAG,cAAc,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,OAAO,EAAE,UAAU,CAAC,CAAC,CAAA;QACnE,MAAM,SAAS,GAAG,cAAc,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,OAAO,EAAE,WAAW,CAAC,CAAC,CAAA;QAErE,MAAM,UAAU,GAAG,YAAY,CAC7B,aAA6B,EAC7B,IAAI,CAAC,aAAa,CACnB,CAAA;QACD,MAAM,KAAK,GAAG,SAAS,KAAK,KAAK,CAAA;QACjC,MAAM,GAAG,GAAG,IAAI,gBAAgB,CAAC;YAC/B,UAAU;YACV,aAAa,EAAE,KAAK;gBAClB,CAAC,CAAC,YAAY,CAAC,QAAQ,EAAE,IAAI,CAAC,aAAa,CAAC;gBAC5C,CAAC,CAAC,SAAS;YACb,aAAa,EAAE,CAAC,KAAK;gBACnB,CAAC,CAAC,YAAY,CAAC,QAAQ,EAAE,IAAI,CAAC,aAAa,CAAC;gBAC5C,CAAC,CAAC,SAAS;YACb,cAAc,EAAE,EAAE,GAAG,CAAC,IAAI,EAAE;YAC5B,cAAc,EAAE,UAAU;SAC3B,CAAC,CAAA;QAEF,MAAM,MAAM,GAAG,MAAM,GAAG,CAAC,SAAS,EAAE,CAAA;QACpC,OAAO;YACL,UAAU;YACV,GAAG;YACH,MAAM,EAAE,IAAI,SAAS,CAAC,EAAE,MAAM,EAAE,CAAC;SAClC,CAAA;IACH,CAAC;IAES,KAAK,CAAC,SAAS;QACvB,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE;YACpB,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,YAAY,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC9C,IAAI,CAAC,UAAU,GAAG,SAAS,CAAA;gBAC3B,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,UAAU,CAAA;IACxB,CAAC;IAEM,KAAK,CAAC,WAAW,CAAC,OAAoB,EAAE;QAC7C,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,OAAO,GAAG,CAAC,yBAAyB,CAAC,IAAI,CAAC,CAAA;IAC5C,CAAC;IAED,KAAK,CAAC,SAAS;QACb,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,OAAO,GAAG,CAAC,SAAS,EAAE,CAAA;IACxB,CAAC;IAED,KAAK,CAAC,WAAW;QACf,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACzC,OAAO,MAAM,CAAC,WAAW,EAAE,CAAA;IAC7B,CAAC;IAEM,WAAW,CAAC,KAAuB,EAAE,OAAoB,EAAE;QAChE,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,KAAK,CAAA;YACrC,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;YAC9C,MAAM,GAAG,CAAC,QAAQ,CAAC,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE;gBACtC,YAAY,EAAE,CAAC,IAAI,EAAE,UAAU,EAAE,EAAE;oBACjC,QAAQ,CAAC,IAAI,CACX,IAAI,UAAU,CAAC;wBACb,OAAO,EAAE,MAAM,CAAC,SAAS,CAAC,IAAI,CAAC;wBAC/B,MAAM;wBACN,EAAE,EAAE,GAAG,IAAI,CAAC,EAAE,QAAQ,UAAU,EAAE;qBACnC,CAAC,CACH,CAAA;gBACH,CAAC;gBACD,GAAG,IAAI;aACR,CAAC,CAAA;YACF,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,CAAA;IACjB,CAAC;IAED;;;;;;;;;;;;;OAaG;IACI,4BAA4B,CACjC,OAAiB,EACjB,OAAoB,EAAE;QAEtB,OAAO,gBAAgB,CAAU,KAAK,EAAE,QAA2B,EAAE,EAAE;YACrE,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;YAEtC,aAAa;YACb,MAAM,KAAK,GAAG,MAAM,eAAe,CAAC,OAAO,EAAE,GAAG,CAAC,KAAK,CAAC,CAAA;YACvD,MAAM,EAAE,UAAU,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;YAC7C,MAAM,IAAI,GAAG,MAAM,UAAU,CAAC,IAAI,EAAE,CAAA;YACpC,IAAI,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,KAAK,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,GAAG,CAAC,CAAA;YAC/C,IAAI,GAAG,GAAG,GAAG,EAAE;gBACb,yDAAyD;gBACzD,GAAG,GAAG,GAAG,CAAA;aACV;YACD,IAAI,GAAG,GAAG,EAAE,EAAE;gBACZ,OAAO,CAAC,IAAI,CACV,yCAAyC,GAAG,6DAA6D,CAC1G,CAAA;aACF;YACD,KAAK,CAAC,4BAA4B,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAA;QACvE,CAAC,CAAC,CAAA;IACJ,CAAC;IAEM,aAAa,EAAC,gBAAgB,IAAS,CAAC;CAChD"}
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@jbrowse/plugin-variants",
|
|
3
|
-
"version": "2.1.
|
|
3
|
+
"version": "2.1.7",
|
|
4
4
|
"description": "JBrowse 2 variant adapters, tracks, etc.",
|
|
5
5
|
"keywords": [
|
|
6
6
|
"jbrowse",
|
|
@@ -65,5 +65,5 @@
|
|
|
65
65
|
"distModule": "esm/index.js",
|
|
66
66
|
"srcModule": "src/index.ts",
|
|
67
67
|
"module": "esm/index.js",
|
|
68
|
-
"gitHead": "
|
|
68
|
+
"gitHead": "a1344081f61e22e0f597517efa7386023eef9f33"
|
|
69
69
|
}
|
|
@@ -29,20 +29,23 @@ export default function (configSchema: LinearVariantDisplayConfigModel) {
|
|
|
29
29
|
const { rpcManager } = session
|
|
30
30
|
const sessionId = getRpcSessionId(self)
|
|
31
31
|
const track = getContainingTrack(self)
|
|
32
|
+
const view = getContainingView(self)
|
|
32
33
|
const adapterConfig = getConf(track, 'adapter')
|
|
33
|
-
const
|
|
34
|
-
|
|
35
|
-
|
|
36
|
-
const featureWidget = session.addWidget(
|
|
37
|
-
'VariantFeatureWidget',
|
|
38
|
-
'variantFeature',
|
|
34
|
+
const descriptions = await rpcManager.call(
|
|
35
|
+
sessionId,
|
|
36
|
+
'CoreGetMetadata',
|
|
39
37
|
{
|
|
40
|
-
|
|
41
|
-
view: getContainingView(self),
|
|
42
|
-
descriptions: header,
|
|
38
|
+
adapterConfig,
|
|
43
39
|
},
|
|
44
40
|
)
|
|
45
|
-
session.showWidget(
|
|
41
|
+
session.showWidget(
|
|
42
|
+
session.addWidget('VariantFeatureWidget', 'variantFeature', {
|
|
43
|
+
featureData: feature.toJSON(),
|
|
44
|
+
view,
|
|
45
|
+
track,
|
|
46
|
+
descriptions,
|
|
47
|
+
}),
|
|
48
|
+
)
|
|
46
49
|
}
|
|
47
50
|
|
|
48
51
|
session.setSelection(feature)
|
|
@@ -4,8 +4,7 @@ import { Link, Typography } from '@mui/material'
|
|
|
4
4
|
import SimpleFeature, {
|
|
5
5
|
SimpleFeatureSerialized,
|
|
6
6
|
} from '@jbrowse/core/util/simpleFeature'
|
|
7
|
-
import { getSession } from '@jbrowse/core/util'
|
|
8
|
-
import { getEnv } from 'mobx-state-tree'
|
|
7
|
+
import { getEnv, getSession } from '@jbrowse/core/util'
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9
8
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import { BaseCard } from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail'
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10
9
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import BreakendOptionDialog from './BreakendOptionDialog'
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11
10
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@@ -189,6 +189,45 @@ exports[`VariantTrack widget renders with just the required model elements 1`] =
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</div>
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</div>
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</div>
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+
<div
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+
class="tss-1upvn7b-container2"
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+
>
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+
<button
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class="MuiButtonBase-root MuiButton-root MuiButton-contained MuiButton-containedPrimary MuiButton-sizeMedium MuiButton-containedSizeMedium MuiButton-root MuiButton-contained MuiButton-containedPrimary MuiButton-sizeMedium MuiButton-containedSizeMedium css-sghohy-MuiButtonBase-root-MuiButton-root"
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+
tabindex="0"
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+
type="button"
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>
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+
Show feature sequence
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<span
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class="MuiTouchRipple-root css-8je8zh-MuiTouchRipple-root"
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/>
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</button>
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+
<div
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class="MuiFormControl-root tss-1x17dzq-formControl css-1nrlq1o-MuiFormControl-root"
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+
>
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+
<button
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209
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+
class="MuiButtonBase-root MuiIconButton-root MuiIconButton-sizeMedium css-78trlr-MuiButtonBase-root-MuiIconButton-root"
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210
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+
tabindex="0"
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211
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+
type="button"
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+
>
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+
<svg
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214
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+
aria-hidden="true"
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215
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+
class="MuiSvgIcon-root MuiSvgIcon-fontSizeMedium css-i4bv87-MuiSvgIcon-root"
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216
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+
data-testid="HelpIcon"
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217
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+
focusable="false"
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218
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+
viewBox="0 0 24 24"
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+
>
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220
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+
<path
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221
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+
d="M12 2C6.48 2 2 6.48 2 12s4.48 10 10 10 10-4.48 10-10S17.52 2 12 2zm1 17h-2v-2h2v2zm2.07-7.75-.9.92C13.45 12.9 13 13.5 13 15h-2v-.5c0-1.1.45-2.1 1.17-2.83l1.24-1.26c.37-.36.59-.86.59-1.41 0-1.1-.9-2-2-2s-2 .9-2 2H8c0-2.21 1.79-4 4-4s4 1.79 4 4c0 .88-.36 1.68-.93 2.25z"
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222
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+
/>
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223
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+
</svg>
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224
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+
<span
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225
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+
class="MuiTouchRipple-root css-8je8zh-MuiTouchRipple-root"
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226
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+
/>
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227
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+
</button>
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228
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+
</div>
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+
<br />
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+
</div>
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192
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|
</div>
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</div>
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</div>
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|
@@ -85,7 +85,7 @@ export default class extends BaseFeatureDataAdapter {
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|
85
85
|
const { refName, start, end } = query
|
|
86
86
|
const { vcf, parser } = await this.configure()
|
|
87
87
|
await vcf.getLines(refName, start, end, {
|
|
88
|
-
lineCallback: (line
|
|
88
|
+
lineCallback: (line, fileOffset) => {
|
|
89
89
|
observer.next(
|
|
90
90
|
new VcfFeature({
|
|
91
91
|
variant: parser.parseLine(line),
|