@jbrowse/plugin-variants 1.7.7 → 1.7.10

package/dist/VariantFeatureWidget/index.d.ts

@@ -1,11 +1,37 @@
-export function stateModelFactory(pluginManager: any): import("mobx-state-tree").IModelType<{
+import PluginManager from '@jbrowse/core/PluginManager';
+export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export declare function stateModelFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    type: import("mobx-state-tree").ISimpleType<"VariantFeatureWidget">;
-    view: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<any>>;
+    type: import("mobx-state-tree").ISimpleType<"BaseFeatureWidget">;
     featureData: import("mobx-state-tree").IType<any, any, any>;
+    formattedFields: import("mobx-state-tree").IType<any, any, any>;
+    unformattedFeatureData: import("mobx-state-tree").IType<any, any, any>;
+    view: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+    track: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+} & {
+    type: import("mobx-state-tree").ISimpleType<"VariantFeatureWidget">;
     descriptions: import("mobx-state-tree").IType<any, any, any>;
 }, {
-    setFeatureData(data: any): void;
+    setFeatureData(featureData: Record<string, unknown>): void;
     clearFeatureData(): void;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+    setFormattedData(feat: Record<string, unknown>): void;
+} & {
+    afterCreate(): void;
+}, {
+    type: "BaseFeatureWidget";
+} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("mobx-state-tree").ISimpleType<"BaseFeatureWidget">;
+    featureData: import("mobx-state-tree").IType<any, any, any>;
+    formattedFields: import("mobx-state-tree").IType<any, any, any>;
+    unformattedFeatureData: import("mobx-state-tree").IType<any, any, any>;
+    view: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+    track: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+}>> & import("mobx-state-tree")._NotCustomized, {
+    id: string;
+    type: "BaseFeatureWidget";
+    formattedFields: any;
+    view: import("mobx-state-tree").ReferenceIdentifier | undefined;
+    track: import("mobx-state-tree").ReferenceIdentifier | undefined;
+    finalizedFeatureData: any;
+} & import("mobx-state-tree")._NotCustomized>;

package/dist/VariantFeatureWidget/index.js

@@ -8,28 +8,17 @@ exports.stateModelFactory = stateModelFactory;
 
 var _configuration = require("@jbrowse/core/configuration");
 
-var _mst = require("@jbrowse/core/util/types/mst");
-
 var _mobxStateTree = require("mobx-state-tree");
 
+var _BaseFeatureWidget = require("@jbrowse/core/BaseFeatureWidget");
+
 var configSchema = (0, _configuration.ConfigurationSchema)('VariantFeatureWidget', {});
 exports.configSchema = configSchema;
 
 function stateModelFactory(pluginManager) {
-  return _mobxStateTree.types.model('VariantFeatureWidget', {
-    id: _mst.ElementId,
+  var baseModel = (0, _BaseFeatureWidget.stateModelFactory)(pluginManager);
+  return _mobxStateTree.types.compose(baseModel, _mobxStateTree.types.model('VariantFeatureWidget', {
     type: _mobxStateTree.types.literal('VariantFeatureWidget'),
-    view: _mobxStateTree.types.safeReference(pluginManager.pluggableMstType('view', 'stateModel')),
-    featureData: _mobxStateTree.types.frozen(),
     descriptions: _mobxStateTree.types.frozen()
-  }).actions(function (self) {
-    return {
-      setFeatureData: function setFeatureData(data) {
-        self.featureData = data;
-      },
-      clearFeatureData: function clearFeatureData() {
-        self.featureData = undefined;
-      }
-    };
-  });
+  }));
 }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-variants",
-  "version": "1.7.7",
+  "version": "1.7.10",
   "description": "JBrowse 2 variant adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
@@ -57,5 +57,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "2c26e04ae942c380bf2f5b79ef7a49cc32b7bfed"
+  "gitHead": "02d8c1e88e5603ea5855faed4ccb814e28071b32"
 }

package/src/VariantFeatureWidget/VariantFeatureWidget.tsx

@@ -143,7 +143,7 @@ function BreakendPanel(props: {
           <li key={`${JSON.stringify(locString)}`}>
             <Link
               href="#"
-              onClick={(event: any) => {
+              onClick={event => {
                 event.preventDefault()
                 const { view } = model
                 try {
@@ -175,7 +175,7 @@ function BreakendPanel(props: {
               <li key={`${JSON.stringify(locString)}`}>
                 <Link
                   href="#"
-                  onClick={(event: any) => {
+                  onClick={event => {
                     event.preventDefault()
                     setBreakpointDialog(true)
                   }}

package/src/VariantFeatureWidget/index.ts

@@ -0,0 +1,17 @@
+import { ConfigurationSchema } from '@jbrowse/core/configuration'
+import PluginManager from '@jbrowse/core/PluginManager'
+import { types } from 'mobx-state-tree'
+import { stateModelFactory as baseModelFactory } from '@jbrowse/core/BaseFeatureWidget'
+
+export const configSchema = ConfigurationSchema('VariantFeatureWidget', {})
+
+export function stateModelFactory(pluginManager: PluginManager) {
+  const baseModel = baseModelFactory(pluginManager)
+  return types.compose(
+    baseModel,
+    types.model('VariantFeatureWidget', {
+      type: types.literal('VariantFeatureWidget'),
+      descriptions: types.frozen(),
+    }),
+  )
+}

package/src/VariantFeatureWidget/index.js

@@ -1,26 +0,0 @@
-import { ConfigurationSchema } from '@jbrowse/core/configuration'
-import { ElementId } from '@jbrowse/core/util/types/mst'
-import { types } from 'mobx-state-tree'
-
-export const configSchema = ConfigurationSchema('VariantFeatureWidget', {})
-
-export function stateModelFactory(pluginManager) {
-  return types
-    .model('VariantFeatureWidget', {
-      id: ElementId,
-      type: types.literal('VariantFeatureWidget'),
-      view: types.safeReference(
-        pluginManager.pluggableMstType('view', 'stateModel'),
-      ),
-      featureData: types.frozen(),
-      descriptions: types.frozen(),
-    })
-    .actions(self => ({
-      setFeatureData(data) {
-        self.featureData = data
-      },
-      clearFeatureData() {
-        self.featureData = undefined
-      },
-    }))
-}