@jbrowse/plugin-variants 1.7.1 → 1.7.5

package/dist/VcfTabixAdapter/configSchema.js

@@ -3,7 +3,7 @@
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _mobxStateTree = require("mobx-state-tree");
 
@@ -35,4 +35,4 @@ var _default = (0, _configuration.ConfigurationSchema)('VcfTabixAdapter', {
   explicitlyTyped: true
 });
 
-exports["default"] = _default;
+exports.default = _default;

package/dist/VcfTabixAdapter/index.js

@@ -8,7 +8,7 @@ Object.defineProperty(exports, "__esModule", {
 Object.defineProperty(exports, "configSchema", {
   enumerable: true,
   get: function get() {
-    return _configSchema["default"];
+    return _configSchema.default;
   }
 });
 

package/dist/index.js

@@ -10,10 +10,10 @@ Object.defineProperty(exports, "__esModule", {
 Object.defineProperty(exports, "VcfFeature", {
   enumerable: true,
   get: function get() {
-    return _VcfFeature["default"];
+    return _VcfFeature.default;
   }
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
@@ -65,43 +65,43 @@ var _VcfFeature = _interopRequireDefault(require("./VcfTabixAdapter/VcfFeature")
 
 function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
 
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
 
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
 
 function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
 
 var VariantsPlugin = /*#__PURE__*/function (_Plugin) {
-  (0, _inherits2["default"])(VariantsPlugin, _Plugin);
+  (0, _inherits2.default)(VariantsPlugin, _Plugin);
 
   var _super = _createSuper(VariantsPlugin);
 
   function VariantsPlugin() {
     var _this;
 
-    (0, _classCallCheck2["default"])(this, VariantsPlugin);
+    (0, _classCallCheck2.default)(this, VariantsPlugin);
 
     for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
       args[_key] = arguments[_key];
     }
 
     _this = _super.call.apply(_super, [this].concat(args));
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "name", 'VariantsPlugin');
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'VariantsPlugin');
     return _this;
   }
 
-  (0, _createClass2["default"])(VariantsPlugin, [{
+  (0, _createClass2.default)(VariantsPlugin, [{
     key: "install",
     value: function install(pluginManager) {
       pluginManager.addAdapterType(function () {
-        return new _AdapterType["default"]({
+        return new _AdapterType.default({
           name: 'VcfTabixAdapter',
           configSchema: _VcfTabixAdapter.configSchema,
           getAdapterClass: function getAdapterClass() {
             return Promise.resolve().then(function () {
               return _interopRequireWildcard(require('./VcfTabixAdapter/VcfTabixAdapter'));
             }).then(function (r) {
-              return r["default"];
+              return r.default;
             });
           }
         });
@@ -140,14 +140,14 @@ var VariantsPlugin = /*#__PURE__*/function (_Plugin) {
         };
       });
       pluginManager.addAdapterType(function () {
-        return new _AdapterType["default"]({
+        return new _AdapterType.default({
           name: 'VcfAdapter',
           configSchema: _VcfAdapter.configSchema,
           getAdapterClass: function getAdapterClass() {
             return Promise.resolve().then(function () {
               return _interopRequireWildcard(require('./VcfAdapter/VcfAdapter'));
             }).then(function (r) {
-              return r["default"];
+              return r.default;
             });
           }
         });
@@ -169,24 +169,24 @@ var VariantsPlugin = /*#__PURE__*/function (_Plugin) {
         };
       });
       pluginManager.addRendererType(function () {
-        return pluginManager.jbrequire(_StructuralVariantChordRenderer["default"]);
+        return pluginManager.jbrequire(_StructuralVariantChordRenderer.default);
       });
       pluginManager.addTrackType(function () {
         var configSchema = (0, _configuration.ConfigurationSchema)('VariantTrack', {}, {
           baseConfiguration: (0, _models.createBaseTrackConfig)(pluginManager)
         });
-        return new _TrackType["default"]({
+        return new _TrackType.default({
           name: 'VariantTrack',
           configSchema: configSchema,
           stateModel: (0, _models.createBaseTrackModel)(pluginManager, 'VariantTrack', configSchema)
         });
       });
       pluginManager.addDisplayType(function () {
-        return pluginManager.jbrequire(_ChordVariantDisplay["default"]);
+        return pluginManager.jbrequire(_ChordVariantDisplay.default);
       });
       pluginManager.addDisplayType(function () {
         var configSchema = (0, _LinearVariantDisplay.configSchemaFactory)(pluginManager);
-        return new _DisplayType["default"]({
+        return new _DisplayType.default({
           name: 'LinearVariantDisplay',
           configSchema: configSchema,
           stateModel: (0, _LinearVariantDisplay.modelFactory)(configSchema),
@@ -196,7 +196,7 @@ var VariantsPlugin = /*#__PURE__*/function (_Plugin) {
         });
       });
       pluginManager.addWidgetType(function () {
-        return new _WidgetType["default"]({
+        return new _WidgetType.default({
           name: 'VariantFeatureWidget',
           heading: 'Feature details',
           configSchema: _VariantFeatureWidget.configSchema,
@@ -211,6 +211,6 @@ var VariantsPlugin = /*#__PURE__*/function (_Plugin) {
     }
   }]);
   return VariantsPlugin;
-}(_Plugin2["default"]);
+}(_Plugin2.default);
 
-exports["default"] = VariantsPlugin;
+exports.default = VariantsPlugin;

package/dist/index.test.js

@@ -14,11 +14,11 @@ var _ = _interopRequireDefault(require("."));
 
 test('plugin in a stock JBrowse', function () {
   console.warn = jest.fn();
-  var pluginManager = new _PluginManager["default"]([new _["default"](), new _pluginAlignments["default"](), new _pluginSvg["default"]()]);
+  var pluginManager = new _PluginManager.default([new _.default(), new _pluginAlignments.default(), new _pluginSvg.default()]);
   pluginManager.createPluggableElements();
   pluginManager.configure();
   expect(function () {
-    return pluginManager.addPlugin(new _["default"]());
+    return pluginManager.addPlugin(new _.default());
   }).toThrow(/JBrowse already configured, cannot add plugins/);
   var VcfTabixAdapter = pluginManager.getAdapterType('VcfTabixAdapter');
   var config = VcfTabixAdapter.configSchema.create({

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-variants",
-  "version": "1.7.1",
+  "version": "1.7.5",
   "description": "JBrowse 2 variant adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
@@ -33,6 +33,7 @@
     "postbuild": "tsc --build tsconfig.build.json"
   },
   "dependencies": {
+    "@babel/runtime": "^7.17.9",
     "@flatten-js/interval-tree": "^1.0.15",
     "@gmod/bgzf-filehandle": "^1.4.3",
     "@gmod/tabix": "^1.5.2",
@@ -56,5 +57,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "6da232090c90f22ac96fd464c33082c89b8da14b"
+  "gitHead": "2c3a1f0c95a47b24eba790eaeb49274caf297aeb"
 }