@jbrowse/plugin-variants 1.6.5 → 1.6.8

package/dist/LinearVariantDisplay/configSchema.d.ts

@@ -1,5 +1,5 @@
 import { Instance } from 'mobx-state-tree';
 import PluginManager from '@jbrowse/core/PluginManager';
-export declare function LinearVariantDisplayConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+export declare function LinearVariantDisplayConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
 export declare type LinearVariantDisplayConfigModel = ReturnType<typeof LinearVariantDisplayConfigFactory>;
 export declare type LinearVariantDisplayConfig = Instance<LinearVariantDisplayConfigModel>;

package/dist/VariantFeatureWidget/index.d.ts

@@ -8,4 +8,4 @@ export function stateModelFactory(pluginManager: any): import("mobx-state-tree")
     setFeatureData(data: any): void;
     clearFeatureData(): void;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export const configSchema: import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+export const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;

package/dist/VcfAdapter/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
 export default _default;

package/dist/VcfTabixAdapter/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
 export default _default;

package/dist/plugin-variants.cjs.development.js

@@ -34,7 +34,6 @@ var core = require('@material-ui/core');
 var SimpleFeature = _interopDefault(require('@jbrowse/core/util/simpleFeature'));
 var xDataGrid = require('@mui/x-data-grid');
 var BaseFeatureDetail = require('@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail');
-var styles = require('@material-ui/core/styles');
 var CloseIcon = _interopDefault(require('@material-ui/icons/Close'));
 
 function ownKeys(object, enumerableOnly) {
@@ -2590,7 +2589,7 @@ var VcfAdapter$1 = {
   'default': VcfAdapter
 };
 
-var useStyles = /*#__PURE__*/styles.makeStyles(function (theme) {
+var useStyles = /*#__PURE__*/core.makeStyles(function (theme) {
   return {
     closeButton: {
       position: 'absolute',
@@ -2627,7 +2626,7 @@ function BreakendOptionDialog(_ref) {
   }, /*#__PURE__*/React__default.createElement(core.DialogTitle, null, "Breakpoint split view options", handleClose ? /*#__PURE__*/React__default.createElement(core.IconButton, {
     className: classes.closeButton,
     onClick: function onClick() {
-      handleClose();
+      return handleClose();
     }
   }, /*#__PURE__*/React__default.createElement(CloseIcon, null)) : null), /*#__PURE__*/React__default.createElement(core.Divider, null), /*#__PURE__*/React__default.createElement(core.DialogContent, null, /*#__PURE__*/React__default.createElement(core.FormControlLabel, {
     className: classes.block,
@@ -2655,14 +2654,21 @@ function BreakendOptionDialog(_ref) {
     onClick: function onClick() {
       var view = model.view;
       var session = util.getSession(model);
-      var viewSnapshot = viewType.snapshotFromBreakendFeature(feature, view);
-      viewSnapshot.views[0].offsetPx -= view.width / 2 + 100;
-      viewSnapshot.views[1].offsetPx -= view.width / 2 + 100;
-      viewSnapshot.featureData = feature;
-      var viewTracks = mobxStateTree.getSnapshot(view.tracks);
-      viewSnapshot.views[0].tracks = viewTracks;
-      viewSnapshot.views[1].tracks = mirrorTracks ? viewTracks.slice().reverse() : viewTracks;
-      session.addView('BreakpointSplitView', viewSnapshot);
+
+      try {
+        var viewSnapshot = viewType.snapshotFromBreakendFeature(feature, view);
+        viewSnapshot.views[0].offsetPx -= view.width / 2 + 100;
+        viewSnapshot.views[1].offsetPx -= view.width / 2 + 100;
+        viewSnapshot.featureData = feature;
+        var viewTracks = mobxStateTree.getSnapshot(view.tracks);
+        viewSnapshot.views[0].tracks = viewTracks;
+        viewSnapshot.views[1].tracks = mirrorTracks ? viewTracks.slice().reverse() : viewTracks;
+        session.addView('BreakpointSplitView', viewSnapshot);
+      } catch (e) {
+        console.error(e);
+        session.notify("".concat(e));
+      }
+
       handleClose();
     },
     variant: "contained",
@@ -2670,11 +2676,10 @@ function BreakendOptionDialog(_ref) {
     autoFocus: true
   }, "OK"), /*#__PURE__*/React__default.createElement(core.Button, {
     onClick: function onClick() {
-      handleClose();
+      return handleClose();
     },
     color: "secondary",
-    variant: "contained",
-    autoFocus: true
+    variant: "contained"
   }, "Cancel")));
 }
 
@@ -2807,12 +2812,17 @@ function BreakendPanel(props) {
         event.preventDefault();
         var view = model.view;
 
-        if (view) {
-          var _view$navToLocString;
+        try {
+          if (view) {
+            var _view$navToLocString;
 
-          (_view$navToLocString = view.navToLocString) === null || _view$navToLocString === void 0 ? void 0 : _view$navToLocString.call(view, locString);
-        } else {
-          session.notify('No view associated with this feature detail panel anymore', 'warning');
+            (_view$navToLocString = view.navToLocString) === null || _view$navToLocString === void 0 ? void 0 : _view$navToLocString.call(view, locString);
+          } else {
+            throw new Error('No view associated with this feature detail panel anymore');
+          }
+        } catch (e) {
+          console.error(e);
+          session.notify("".concat(e));
         }
       }
     }, "LGV - ".concat(locString)));