@jbrowse/plugin-variants 1.5.1 → 1.5.5

package/dist/VcfTabixAdapter/VcfTabixAdapter.d.ts

@@ -7,12 +7,12 @@ import VcfParser from '@gmod/vcf';
 export default class extends BaseFeatureDataAdapter {
     protected configured?: Promise<{
         vcf: TabixIndexedFile;
-        parser: typeof VcfParser;
+        parser: VcfParser;
         filehandle: GenericFilehandle;
     }>;
     protected configure(): Promise<{
         vcf: TabixIndexedFile;
-        parser: any;
+        parser: VcfParser;
         filehandle: GenericFilehandle;
     }>;
     getRefNames(opts?: BaseOptions): Promise<any>;

package/dist/plugin-variants.cjs.development.js

@@ -42,14 +42,9 @@ function ownKeys(object, enumerableOnly) {
 
   if (Object.getOwnPropertySymbols) {
     var symbols = Object.getOwnPropertySymbols(object);
-
-    if (enumerableOnly) {
-      symbols = symbols.filter(function (sym) {
-        return Object.getOwnPropertyDescriptor(object, sym).enumerable;
-      });
-    }
-
-    keys.push.apply(keys, symbols);
+    enumerableOnly && (symbols = symbols.filter(function (sym) {
+      return Object.getOwnPropertyDescriptor(object, sym).enumerable;
+    })), keys.push.apply(keys, symbols);
   }
 
   return keys;
@@ -57,19 +52,12 @@ function ownKeys(object, enumerableOnly) {
 
 function _objectSpread2(target) {
   for (var i = 1; i < arguments.length; i++) {
-    var source = arguments[i] != null ? arguments[i] : {};
-
-    if (i % 2) {
-      ownKeys(Object(source), true).forEach(function (key) {
-        _defineProperty(target, key, source[key]);
-      });
-    } else if (Object.getOwnPropertyDescriptors) {
-      Object.defineProperties(target, Object.getOwnPropertyDescriptors(source));
-    } else {
-      ownKeys(Object(source)).forEach(function (key) {
-        Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key));
-      });
-    }
+    var source = null != arguments[i] ? arguments[i] : {};
+    i % 2 ? ownKeys(Object(source), !0).forEach(function (key) {
+      _defineProperty(target, key, source[key]);
+    }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) {
+      Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key));
+    });
   }
 
   return target;
@@ -130,6 +118,9 @@ function _defineProperties(target, props) {
 function _createClass(Constructor, protoProps, staticProps) {
   if (protoProps) _defineProperties(Constructor.prototype, protoProps);
   if (staticProps) _defineProperties(Constructor, staticProps);
+  Object.defineProperty(Constructor, "prototype", {
+    writable: false
+  });
   return Constructor;
 }
 
@@ -153,12 +144,15 @@ function _inherits(subClass, superClass) {
     throw new TypeError("Super expression must either be null or a function");
   }
 
-  subClass.prototype = Object.create(superClass && superClass.prototype, {
-    constructor: {
-      value: subClass,
-      writable: true,
-      configurable: true
-    }
+  Object.defineProperty(subClass, "prototype", {
+    value: Object.create(superClass && superClass.prototype, {
+      constructor: {
+        value: subClass,
+        writable: true,
+        configurable: true
+      }
+    }),
+    writable: false
   });
   if (superClass) _setPrototypeOf(subClass, superClass);
 }
@@ -274,7 +268,7 @@ function _superPropBase(object, property) {
   return object;
 }
 
-function _get(target, property, receiver) {
+function _get() {
   if (typeof Reflect !== "undefined" && Reflect.get) {
     _get = Reflect.get;
   } else {
@@ -285,14 +279,14 @@ function _get(target, property, receiver) {
       var desc = Object.getOwnPropertyDescriptor(base, property);
 
       if (desc.get) {
-        return desc.get.call(receiver);
+        return desc.get.call(arguments.length < 3 ? target : receiver);
       }
 
       return desc.value;
     };
   }
 
-  return _get(target, property, receiver || target);
+  return _get.apply(this, arguments);
 }
 
 function _slicedToArray(arr, i) {
@@ -2290,7 +2284,9 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
     }()
   }, {
     key: "freeResources",
-    value: function freeResources() {}
+    value: function
+      /* { region } */
+    freeResources() {}
   }]);
 
   return _default;
@@ -2900,7 +2896,9 @@ function VariantFeatureDetails(props) {
   }, props)), /*#__PURE__*/React__default.createElement(core.Divider, null), feat.type === 'breakend' ? /*#__PURE__*/React__default.createElement(BreakendPanel, {
     feature: feat,
     locStrings: feat.ALT.map(function (alt) {
-      return VCF.parseBreakend(alt).MatePosition;
+      var _parseBreakend;
+
+      return ((_parseBreakend = VCF.parseBreakend(alt)) === null || _parseBreakend === void 0 ? void 0 : _parseBreakend.MatePosition) || '';
     }),
     model: model
   }) : null, feat.type === 'translocation' ? /*#__PURE__*/React__default.createElement(BreakendPanel, {