@jbrowse/plugin-variants 1.5.0 → 1.5.4

package/dist/ChordVariantDisplay/index.d.ts

@@ -1,3 +1,3 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => import("@jbrowse/core/pluggableElementTypes/DisplayType").default;
+declare const _default: (pluginManager: PluginManager) => import("@jbrowse/core/pluggableElementTypes").DisplayType;
 export default _default;

package/dist/VcfAdapter/VcfAdapter.d.ts

@@ -1,20 +1,23 @@
 import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
 import { Region } from '@jbrowse/core/util/types';
 import { Feature } from '@jbrowse/core/util/simpleFeature';
-import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
 import IntervalTree from '@flatten-js/interval-tree';
-import VcfFeature from '../VcfTabixAdapter/VcfFeature';
-import PluginManager from '@jbrowse/core/PluginManager';
-import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
 export default class VcfAdapter extends BaseFeatureDataAdapter {
     static capabilities: string[];
-    protected vcfFeatures?: Promise<Record<string, IntervalTree>>;
-    constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
-    private decodeFileContents;
+    protected vcfFeatures?: Promise<{
+        header: string;
+        intervalTree: Record<string, IntervalTree>;
+    }>;
     getHeader(): Promise<string>;
     getMetadata(): Promise<any>;
-    getLines(): Promise<VcfFeature[]>;
-    setup(): Promise<Record<string, IntervalTree<any>>>;
+    setupP(): Promise<{
+        header: string;
+        intervalTree: Record<string, IntervalTree<any>>;
+    }>;
+    setup(): Promise<{
+        header: string;
+        intervalTree: Record<string, IntervalTree<any>>;
+    }>;
     getRefNames(_?: BaseOptions): Promise<string[]>;
     getFeatures(region: Region, opts?: BaseOptions): import("rxjs").Observable<Feature>;
     freeResources(): void;

package/dist/VcfTabixAdapter/VcfTabixAdapter.d.ts

@@ -7,12 +7,12 @@ import VcfParser from '@gmod/vcf';
 export default class extends BaseFeatureDataAdapter {
     protected configured?: Promise<{
         vcf: TabixIndexedFile;
-        parser: typeof VcfParser;
+        parser: VcfParser;
         filehandle: GenericFilehandle;
     }>;
     protected configure(): Promise<{
         vcf: TabixIndexedFile;
-        parser: any;
+        parser: VcfParser;
         filehandle: GenericFilehandle;
     }>;
     getRefNames(opts?: BaseOptions): Promise<any>;