@jbrowse/plugin-trix 2.4.1 → 2.5.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/TrixTextSearchAdapter/TrixTextSearchAdapter.d.ts +2 -2
- package/dist/TrixTextSearchAdapter/TrixTextSearchAdapter.js +4 -5
- package/dist/TrixTextSearchAdapter/TrixTextSearchAdapter.js.map +1 -1
- package/dist/TrixTextSearchAdapter/configSchema.d.ts +51 -1
- package/esm/TrixTextSearchAdapter/TrixTextSearchAdapter.d.ts +2 -2
- package/esm/TrixTextSearchAdapter/TrixTextSearchAdapter.js +4 -5
- package/esm/TrixTextSearchAdapter/TrixTextSearchAdapter.js.map +1 -1
- package/esm/TrixTextSearchAdapter/configSchema.d.ts +51 -1
- package/package.json +2 -2
- package/src/TrixTextSearchAdapter/TrixTextSearchAdapter.ts +9 -10
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@@ -1,5 +1,5 @@
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import Trix from '@gmod/trix';
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2
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-
import { BaseTextSearchAdapter,
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2
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+
import { BaseTextSearchAdapter, BaseAdapter, BaseTextSearchArgs } from '@jbrowse/core/data_adapters/BaseAdapter';
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import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
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import { AnyConfigurationModel } from '@jbrowse/core/configuration';
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import PluginManager from '@jbrowse/core/PluginManager';
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@@ -14,6 +14,6 @@ export default class TrixTextSearchAdapter extends BaseAdapter implements BaseTe
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* @param args - search options/arguments include: search query
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* limit of results to return, searchType...prefix | full | exact", etc.
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*/
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-
searchIndex(args:
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searchIndex(args: BaseTextSearchArgs): Promise<BaseResult[]>;
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freeResources(): void;
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}
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@@ -36,7 +36,7 @@ class TrixTextSearchAdapter extends BaseAdapter_1.BaseAdapter {
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if (!ixxFilePath) {
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throw new Error('must provide out.ixx');
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}
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-
this.trixJs = new trix_1.default((0, io_1.openLocation)(ixxFilePath), (0, io_1.openLocation)(ixFilePath), 1500);
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this.trixJs = new trix_1.default((0, io_1.openLocation)(ixxFilePath, pluginManager), (0, io_1.openLocation)(ixFilePath, pluginManager), 1500);
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}
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/**
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* Returns list of results
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@@ -72,10 +72,9 @@ class TrixTextSearchAdapter extends BaseAdapter_1.BaseAdapter {
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trackId,
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});
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});
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-
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-
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-
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-
return formatted;
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return args.searchType === 'exact'
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? formatted.filter(r => r.getLabel().toLowerCase() === args.queryString.toLowerCase())
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: formatted;
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}
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freeResources() { }
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}
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@@ -1 +1 @@
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-
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{"version":3,"file":"TrixTextSearchAdapter.js","sourceRoot":"","sources":["../../src/TrixTextSearchAdapter/TrixTextSearchAdapter.ts"],"names":[],"mappings":";;;;;AAAA,sDAA6B;AAC7B,yEAIgD;AAChD,8CAAoD;AACpD,uFAA6D;AAC7D,+DAGoC;AAIpC,SAAS,yBAAyB,CAAC,GAAW;IAC5C,IAAI;QACF,OAAO,kBAAkB,CAAC,GAAG,CAAC,CAAA;KAC/B;IAAC,OAAO,CAAC,EAAE;QACV,gEAAgE;QAChE,OAAO,GAAG,CAAA;KACX;AACH,CAAC;AAED,SAAS,OAAO,CAAC,GAAW,EAAE,IAAY,EAAE,CAAC,GAAG,EAAE;IAChD,MAAM,IAAI,GAAG,GAAG,CAAC,WAAW,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;IAE5C,OAAO,GAAG,CAAC,MAAM,GAAG,EAAE;QACpB,CAAC,CAAC,GAAG;QACL,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC;YACtC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,GAAG,CAAC,CAAC,EAAE,IAAI,GAAG,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE;YAC/D,CAAC,IAAI,GAAG,IAAI,CAAC,MAAM,GAAG,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,CAAA;AACtD,CAAC;AAED,MAAqB,qBACnB,SAAQ,yBAAW;IAOnB,YACE,MAA6B,EAC7B,aAAiC,EACjC,aAA6B;QAE7B,KAAK,CAAC,MAAM,EAAE,aAAa,EAAE,aAAa,CAAC,CAAA;QAC3C,MAAM,UAAU,GAAG,IAAA,8BAAc,EAAC,MAAM,EAAE,YAAY,CAAC,CAAA;QACvD,MAAM,WAAW,GAAG,IAAA,8BAAc,EAAC,MAAM,EAAE,aAAa,CAAC,CAAA;QAEzD,IAAI,CAAC,UAAU,EAAE;YACf,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;SACvC;QACD,IAAI,CAAC,WAAW,EAAE;YAChB,MAAM,IAAI,KAAK,CAAC,sBAAsB,CAAC,CAAA;SACxC;QACD,IAAI,CAAC,MAAM,GAAG,IAAI,cAAI,CACpB,IAAA,iBAAY,EAAC,WAAW,EAAE,aAAa,CAAC,EACxC,IAAA,iBAAY,EAAC,UAAU,EAAE,aAAa,CAAC,EACvC,IAAI,CACL,CAAA;IACH,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,WAAW,CAAC,IAAwB;QACxC,MAAM,KAAK,GAAG,IAAI,CAAC,WAAW,CAAC,WAAW,EAAE,CAAA;QAC5C,MAAM,IAAI,GAAG,KAAK,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;QAC7B,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;QAC/C,MAAM,SAAS,GAAG,OAAO;YACvB,wDAAwD;aACvD,MAAM,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,EAAE,EAAE,CACnB,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CACb,yBAAyB,CAAC,IAAI,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAC,CAC1D,CACF;aACA,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,IAAI,CAAC,EAAE,EAAE;YACpB,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG,CAAC,CAAa,CAAA;YAC/D,MAAM,CAAC,GAAG,EAAE,OAAO,EAAE,GAAG,IAAI,CAAC,GAAG,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAClD,yBAAyB,CAAC,MAAM,CAAC,CAClC,CAAA;YAED,MAAM,aAAa,GAAG,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,CAAA;YAClD,MAAM,UAAU,GAAG,IAAI;iBACpB,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,WAAW,EAAE,CAAC;iBAC7B,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,WAAW,EAAE,CAAC,CAAC,CAAA;YAEjD,MAAM,UAAU,GAAG,IAAI,CAAC,aAAa,CAAC,CAAA;YACtC,MAAM,YAAY,GAAG,IAAI,CAAC,UAAU,CAAC,CAAA;YACrC,MAAM,OAAO,GACX,UAAU,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,YAAY,EAAE,IAAI,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;YAC7D,MAAM,KAAK,GAAG,OAAO,CAAC,UAAU,EAAE,IAAI,CAAC,CAAA;YAEvC,MAAM,aAAa,GACjB,CAAC,OAAO,IAAI,KAAK,CAAC,WAAW,EAAE,KAAK,OAAO,CAAC,WAAW,EAAE;gBACvD,CAAC,CAAC,KAAK;gBACP,CAAC,CAAC,GAAG,KAAK,KAAK,OAAO,GAAG,CAAA;YAE7B,OAAO,IAAI,qBAAU,CAAC;gBACpB,SAAS,EAAE,GAAG;gBACd,KAAK,EAAE,UAAU;gBACjB,aAAa;gBACb,aAAa,EAAE,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,kBAAkB,CAAC,MAAM,CAAC,CAAC;gBAC/D,OAAO;aACR,CAAC,CAAA;QACJ,CAAC,CAAC,CAAA;QAEJ,OAAO,IAAI,CAAC,UAAU,KAAK,OAAO;YAChC,CAAC,CAAC,SAAS,CAAC,MAAM,CACd,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,EAAE,CAAC,WAAW,EAAE,KAAK,IAAI,CAAC,WAAW,CAAC,WAAW,EAAE,CACnE;YACH,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IAED,aAAa,KAAI,CAAC;CACnB;AArFD,wCAqFC"}
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@@ -1,2 +1,52 @@
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declare const TrixTextSearchAdapter: import("@jbrowse/core/configuration").
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declare const TrixTextSearchAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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/**
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* #slot
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*/
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ixFilePath: {
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type: string;
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defaultValue: {
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uri: string;
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locationType: string;
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};
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description: string;
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};
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/**
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* #slot
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*/
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ixxFilePath: {
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type: string;
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defaultValue: {
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uri: string;
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locationType: string;
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};
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description: string;
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};
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/**
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* #slot
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*/
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metaFilePath: {
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type: string;
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defaultValue: {
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uri: string;
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locationType: string;
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};
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description: string;
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};
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/**
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* #slot
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*/
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tracks: {
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type: string;
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defaultValue: never[];
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description: string;
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};
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/**
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* #slot
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*/
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assemblyNames: {
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type: string;
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defaultValue: never[];
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description: string;
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "textSearchAdapterId">>;
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export default TrixTextSearchAdapter;
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@@ -1,5 +1,5 @@
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import Trix from '@gmod/trix';
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import { BaseTextSearchAdapter,
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import { BaseTextSearchAdapter, BaseAdapter, BaseTextSearchArgs } from '@jbrowse/core/data_adapters/BaseAdapter';
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import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
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import { AnyConfigurationModel } from '@jbrowse/core/configuration';
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import PluginManager from '@jbrowse/core/PluginManager';
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@@ -14,6 +14,6 @@ export default class TrixTextSearchAdapter extends BaseAdapter implements BaseTe
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* @param args - search options/arguments include: search query
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* limit of results to return, searchType...prefix | full | exact", etc.
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*/
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searchIndex(args:
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searchIndex(args: BaseTextSearchArgs): Promise<BaseResult[]>;
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freeResources(): void;
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}
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@@ -31,7 +31,7 @@ export default class TrixTextSearchAdapter extends BaseAdapter {
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if (!ixxFilePath) {
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throw new Error('must provide out.ixx');
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}
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this.trixJs = new Trix(openLocation(ixxFilePath), openLocation(ixFilePath), 1500);
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this.trixJs = new Trix(openLocation(ixxFilePath, pluginManager), openLocation(ixFilePath, pluginManager), 1500);
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}
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/**
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* Returns list of results
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@@ -67,10 +67,9 @@ export default class TrixTextSearchAdapter extends BaseAdapter {
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trackId,
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});
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});
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return formatted;
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return args.searchType === 'exact'
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? formatted.filter(r => r.getLabel().toLowerCase() === args.queryString.toLowerCase())
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: formatted;
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}
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freeResources() { }
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}
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@@ -1 +1 @@
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{"version":3,"file":"TrixTextSearchAdapter.js","sourceRoot":"","sources":["../../src/TrixTextSearchAdapter/TrixTextSearchAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,YAAY,CAAA;AAC7B,OAAO,
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+
{"version":3,"file":"TrixTextSearchAdapter.js","sourceRoot":"","sources":["../../src/TrixTextSearchAdapter/TrixTextSearchAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,YAAY,CAAA;AAC7B,OAAO,EAEL,WAAW,GAEZ,MAAM,yCAAyC,CAAA;AAChD,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,UAAU,MAAM,sCAAsC,CAAA;AAC7D,OAAO,EAEL,cAAc,GACf,MAAM,6BAA6B,CAAA;AAIpC,SAAS,yBAAyB,CAAC,GAAW;IAC5C,IAAI;QACF,OAAO,kBAAkB,CAAC,GAAG,CAAC,CAAA;KAC/B;IAAC,OAAO,CAAC,EAAE;QACV,gEAAgE;QAChE,OAAO,GAAG,CAAA;KACX;AACH,CAAC;AAED,SAAS,OAAO,CAAC,GAAW,EAAE,IAAY,EAAE,CAAC,GAAG,EAAE;IAChD,MAAM,IAAI,GAAG,GAAG,CAAC,WAAW,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;IAE5C,OAAO,GAAG,CAAC,MAAM,GAAG,EAAE;QACpB,CAAC,CAAC,GAAG;QACL,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC;YACtC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,GAAG,CAAC,CAAC,EAAE,IAAI,GAAG,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE;YAC/D,CAAC,IAAI,GAAG,IAAI,CAAC,MAAM,GAAG,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,CAAA;AACtD,CAAC;AAED,MAAM,CAAC,OAAO,OAAO,qBACnB,SAAQ,WAAW;IAOnB,YACE,MAA6B,EAC7B,aAAiC,EACjC,aAA6B;QAE7B,KAAK,CAAC,MAAM,EAAE,aAAa,EAAE,aAAa,CAAC,CAAA;QAC3C,MAAM,UAAU,GAAG,cAAc,CAAC,MAAM,EAAE,YAAY,CAAC,CAAA;QACvD,MAAM,WAAW,GAAG,cAAc,CAAC,MAAM,EAAE,aAAa,CAAC,CAAA;QAEzD,IAAI,CAAC,UAAU,EAAE;YACf,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;SACvC;QACD,IAAI,CAAC,WAAW,EAAE;YAChB,MAAM,IAAI,KAAK,CAAC,sBAAsB,CAAC,CAAA;SACxC;QACD,IAAI,CAAC,MAAM,GAAG,IAAI,IAAI,CACpB,YAAY,CAAC,WAAW,EAAE,aAAa,CAAC,EACxC,YAAY,CAAC,UAAU,EAAE,aAAa,CAAC,EACvC,IAAI,CACL,CAAA;IACH,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,WAAW,CAAC,IAAwB;QACxC,MAAM,KAAK,GAAG,IAAI,CAAC,WAAW,CAAC,WAAW,EAAE,CAAA;QAC5C,MAAM,IAAI,GAAG,KAAK,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;QAC7B,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;QAC/C,MAAM,SAAS,GAAG,OAAO;YACvB,wDAAwD;aACvD,MAAM,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,EAAE,EAAE,CACnB,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CACb,yBAAyB,CAAC,IAAI,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAC,CAC1D,CACF;aACA,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,IAAI,CAAC,EAAE,EAAE;YACpB,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG,CAAC,CAAa,CAAA;YAC/D,MAAM,CAAC,GAAG,EAAE,OAAO,EAAE,GAAG,IAAI,CAAC,GAAG,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAClD,yBAAyB,CAAC,MAAM,CAAC,CAClC,CAAA;YAED,MAAM,aAAa,GAAG,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,CAAA;YAClD,MAAM,UAAU,GAAG,IAAI;iBACpB,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,WAAW,EAAE,CAAC;iBAC7B,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,WAAW,EAAE,CAAC,CAAC,CAAA;YAEjD,MAAM,UAAU,GAAG,IAAI,CAAC,aAAa,CAAC,CAAA;YACtC,MAAM,YAAY,GAAG,IAAI,CAAC,UAAU,CAAC,CAAA;YACrC,MAAM,OAAO,GACX,UAAU,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,YAAY,EAAE,IAAI,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;YAC7D,MAAM,KAAK,GAAG,OAAO,CAAC,UAAU,EAAE,IAAI,CAAC,CAAA;YAEvC,MAAM,aAAa,GACjB,CAAC,OAAO,IAAI,KAAK,CAAC,WAAW,EAAE,KAAK,OAAO,CAAC,WAAW,EAAE;gBACvD,CAAC,CAAC,KAAK;gBACP,CAAC,CAAC,GAAG,KAAK,KAAK,OAAO,GAAG,CAAA;YAE7B,OAAO,IAAI,UAAU,CAAC;gBACpB,SAAS,EAAE,GAAG;gBACd,KAAK,EAAE,UAAU;gBACjB,aAAa;gBACb,aAAa,EAAE,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,kBAAkB,CAAC,MAAM,CAAC,CAAC;gBAC/D,OAAO;aACR,CAAC,CAAA;QACJ,CAAC,CAAC,CAAA;QAEJ,OAAO,IAAI,CAAC,UAAU,KAAK,OAAO;YAChC,CAAC,CAAC,SAAS,CAAC,MAAM,CACd,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,EAAE,CAAC,WAAW,EAAE,KAAK,IAAI,CAAC,WAAW,CAAC,WAAW,EAAE,CACnE;YACH,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IAED,aAAa,KAAI,CAAC;CACnB"}
|
|
@@ -1,2 +1,52 @@
|
|
|
1
|
-
declare const TrixTextSearchAdapter: import("@jbrowse/core/configuration").
|
|
1
|
+
declare const TrixTextSearchAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
2
|
+
/**
|
|
3
|
+
* #slot
|
|
4
|
+
*/
|
|
5
|
+
ixFilePath: {
|
|
6
|
+
type: string;
|
|
7
|
+
defaultValue: {
|
|
8
|
+
uri: string;
|
|
9
|
+
locationType: string;
|
|
10
|
+
};
|
|
11
|
+
description: string;
|
|
12
|
+
};
|
|
13
|
+
/**
|
|
14
|
+
* #slot
|
|
15
|
+
*/
|
|
16
|
+
ixxFilePath: {
|
|
17
|
+
type: string;
|
|
18
|
+
defaultValue: {
|
|
19
|
+
uri: string;
|
|
20
|
+
locationType: string;
|
|
21
|
+
};
|
|
22
|
+
description: string;
|
|
23
|
+
};
|
|
24
|
+
/**
|
|
25
|
+
* #slot
|
|
26
|
+
*/
|
|
27
|
+
metaFilePath: {
|
|
28
|
+
type: string;
|
|
29
|
+
defaultValue: {
|
|
30
|
+
uri: string;
|
|
31
|
+
locationType: string;
|
|
32
|
+
};
|
|
33
|
+
description: string;
|
|
34
|
+
};
|
|
35
|
+
/**
|
|
36
|
+
* #slot
|
|
37
|
+
*/
|
|
38
|
+
tracks: {
|
|
39
|
+
type: string;
|
|
40
|
+
defaultValue: never[];
|
|
41
|
+
description: string;
|
|
42
|
+
};
|
|
43
|
+
/**
|
|
44
|
+
* #slot
|
|
45
|
+
*/
|
|
46
|
+
assemblyNames: {
|
|
47
|
+
type: string;
|
|
48
|
+
defaultValue: never[];
|
|
49
|
+
description: string;
|
|
50
|
+
};
|
|
51
|
+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "textSearchAdapterId">>;
|
|
2
52
|
export default TrixTextSearchAdapter;
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@jbrowse/plugin-trix",
|
|
3
|
-
"version": "2.
|
|
3
|
+
"version": "2.5.0",
|
|
4
4
|
"description": "JBrowse 2 trix text search adapter",
|
|
5
5
|
"keywords": [
|
|
6
6
|
"jbrowse",
|
|
@@ -53,5 +53,5 @@
|
|
|
53
53
|
"distModule": "esm/index.js",
|
|
54
54
|
"srcModule": "src/index.ts",
|
|
55
55
|
"module": "esm/index.js",
|
|
56
|
-
"gitHead": "
|
|
56
|
+
"gitHead": "d1ca073996d008f0fe9a52f7c1a47ae649dcfdaf"
|
|
57
57
|
}
|
|
@@ -1,8 +1,8 @@
|
|
|
1
1
|
import Trix from '@gmod/trix'
|
|
2
2
|
import {
|
|
3
3
|
BaseTextSearchAdapter,
|
|
4
|
-
BaseArgs,
|
|
5
4
|
BaseAdapter,
|
|
5
|
+
BaseTextSearchArgs,
|
|
6
6
|
} from '@jbrowse/core/data_adapters/BaseAdapter'
|
|
7
7
|
import { openLocation } from '@jbrowse/core/util/io'
|
|
8
8
|
import BaseResult from '@jbrowse/core/TextSearch/BaseResults'
|
|
@@ -56,8 +56,8 @@ export default class TrixTextSearchAdapter
|
|
|
56
56
|
throw new Error('must provide out.ixx')
|
|
57
57
|
}
|
|
58
58
|
this.trixJs = new Trix(
|
|
59
|
-
openLocation(ixxFilePath),
|
|
60
|
-
openLocation(ixFilePath),
|
|
59
|
+
openLocation(ixxFilePath, pluginManager),
|
|
60
|
+
openLocation(ixFilePath, pluginManager),
|
|
61
61
|
1500,
|
|
62
62
|
)
|
|
63
63
|
}
|
|
@@ -67,7 +67,7 @@ export default class TrixTextSearchAdapter
|
|
|
67
67
|
* @param args - search options/arguments include: search query
|
|
68
68
|
* limit of results to return, searchType...prefix | full | exact", etc.
|
|
69
69
|
*/
|
|
70
|
-
async searchIndex(args:
|
|
70
|
+
async searchIndex(args: BaseTextSearchArgs) {
|
|
71
71
|
const query = args.queryString.toLowerCase()
|
|
72
72
|
const strs = query.split(' ')
|
|
73
73
|
const results = await this.trixJs.search(query)
|
|
@@ -109,12 +109,11 @@ export default class TrixTextSearchAdapter
|
|
|
109
109
|
})
|
|
110
110
|
})
|
|
111
111
|
|
|
112
|
-
|
|
113
|
-
|
|
114
|
-
|
|
115
|
-
|
|
116
|
-
|
|
117
|
-
return formatted
|
|
112
|
+
return args.searchType === 'exact'
|
|
113
|
+
? formatted.filter(
|
|
114
|
+
r => r.getLabel().toLowerCase() === args.queryString.toLowerCase(),
|
|
115
|
+
)
|
|
116
|
+
: formatted
|
|
118
117
|
}
|
|
119
118
|
|
|
120
119
|
freeResources() {}
|