@jbrowse/plugin-trix 2.1.6 → 2.2.0

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Files changed (13) hide show
  1. package/dist/TrixTextSearchAdapter/TrixTextSearchAdapter.d.ts +5 -0
  2. package/dist/TrixTextSearchAdapter/TrixTextSearchAdapter.js +1 -1
  3. package/dist/TrixTextSearchAdapter/configSchema.d.ts +2 -2
  4. package/dist/TrixTextSearchAdapter/configSchema.js +28 -2
  5. package/dist/TrixTextSearchAdapter/configSchema.js.map +1 -1
  6. package/esm/TrixTextSearchAdapter/TrixTextSearchAdapter.d.ts +5 -0
  7. package/esm/TrixTextSearchAdapter/TrixTextSearchAdapter.js +1 -1
  8. package/esm/TrixTextSearchAdapter/configSchema.d.ts +2 -2
  9. package/esm/TrixTextSearchAdapter/configSchema.js +28 -2
  10. package/esm/TrixTextSearchAdapter/configSchema.js.map +1 -1
  11. package/package.json +2 -2
  12. package/src/TrixTextSearchAdapter/TrixTextSearchAdapter.ts +1 -1
  13. package/src/TrixTextSearchAdapter/configSchema.ts +30 -2
package/dist/TrixTextSearchAdapter/TrixTextSearchAdapter.d.ts CHANGED
@@ -9,6 +9,11 @@ export default class TrixTextSearchAdapter extends BaseAdapter implements BaseTe
9
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  trixJs: Trix;
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  tracksNames?: string[];
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  constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
12
+ /**
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+ * Returns list of results
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+ * @param args - search options/arguments include: search query
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+ * limit of results to return, searchType...prefix | full | exact", etc.
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+ */
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  searchIndex(args: BaseArgs): Promise<BaseResult[]>;
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  freeResources(): void;
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  }
package/dist/TrixTextSearchAdapter/TrixTextSearchAdapter.js CHANGED
@@ -38,7 +38,7 @@ class TrixTextSearchAdapter extends BaseAdapter_1.BaseAdapter {
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  }
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  this.trixJs = new trix_1.default((0, io_1.openLocation)(ixxFilePath), (0, io_1.openLocation)(ixFilePath), 1500);
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  }
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- /*
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+ /**
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  * Returns list of results
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  * @param args - search options/arguments include: search query
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  * limit of results to return, searchType...prefix | full | exact", etc.
package/dist/TrixTextSearchAdapter/configSchema.d.ts CHANGED
@@ -1,2 +1,2 @@
1
- declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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- export default _default;
1
+ declare const TrixTextSearchAdapter: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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+ export default TrixTextSearchAdapter;
package/dist/TrixTextSearchAdapter/configSchema.js CHANGED
@@ -1,31 +1,57 @@
1
1
  "use strict";
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  Object.defineProperty(exports, "__esModule", { value: true });
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  const configuration_1 = require("@jbrowse/core/configuration");
4
- exports.default = (0, configuration_1.ConfigurationSchema)('TrixTextSearchAdapter', {
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+ /**
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+ * #config TrixTextSearchAdapter
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+ */
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+ function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
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+ const TrixTextSearchAdapter = (0, configuration_1.ConfigurationSchema)('TrixTextSearchAdapter', {
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+ /**
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+ * #slot
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+ */
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  ixFilePath: {
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  type: 'fileLocation',
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  defaultValue: { uri: 'out.ix', locationType: 'UriLocation' },
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  description: 'the location of the trix ix file',
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  },
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+ /**
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+ * #slot
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+ */
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  ixxFilePath: {
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  type: 'fileLocation',
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  defaultValue: { uri: 'out.ixx', locationType: 'UriLocation' },
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  description: 'the location of the trix ixx file',
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  },
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+ /**
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+ * #slot
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+ */
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  metaFilePath: {
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  type: 'fileLocation',
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  defaultValue: { uri: 'meta.json', locationType: 'UriLocation' },
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  description: 'the location of the metadata json file for the trix index',
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  },
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+ /**
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+ * #slot
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+ */
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  tracks: {
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  type: 'stringArray',
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  defaultValue: [],
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  description: 'List of tracks covered by text search adapter',
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  },
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+ /**
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+ * #slot
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+ */
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  assemblyNames: {
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  type: 'stringArray',
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  defaultValue: [],
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  description: 'List of assemblies covered by text search adapter',
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  },
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- }, { explicitlyTyped: true, explicitIdentifier: 'textSearchAdapterId' });
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+ }, {
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+ explicitlyTyped: true,
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+ /**
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+ * #identifier
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+ */
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+ explicitIdentifier: 'textSearchAdapterId',
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+ });
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+ exports.default = TrixTextSearchAdapter;
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  //# sourceMappingURL=configSchema.js.map
package/dist/TrixTextSearchAdapter/configSchema.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/TrixTextSearchAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE,kBAAe,IAAA,mCAAmB,EAChC,uBAAuB,EACvB;IACE,UAAU,EAAE;QACV,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,QAAQ,EAAE,YAAY,EAAE,aAAa,EAAE;QAC5D,WAAW,EAAE,kCAAkC;KAChD;IACD,WAAW,EAAE;QACX,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,SAAS,EAAE,YAAY,EAAE,aAAa,EAAE;QAC7D,WAAW,EAAE,mCAAmC;KACjD;IACD,YAAY,EAAE;QACZ,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,WAAW,EAAE,YAAY,EAAE,aAAa,EAAE;QAC/D,WAAW,EAAE,2DAA2D;KACzE;IACD,MAAM,EAAE;QACN,IAAI,EAAE,aAAa;QACnB,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,+CAA+C;KAC7D;IACD,aAAa,EAAE;QACb,IAAI,EAAE,aAAa;QACnB,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,mDAAmD;KACjE;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,kBAAkB,EAAE,qBAAqB,EAAE,CACrE,CAAA"}
1
+ {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/TrixTextSearchAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,qBAAqB,GAAG,IAAA,mCAAmB,EAC/C,uBAAuB,EACvB;IACE;;OAEG;IACH,UAAU,EAAE;QACV,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,QAAQ,EAAE,YAAY,EAAE,aAAa,EAAE;QAC5D,WAAW,EAAE,kCAAkC;KAChD;IACD;;OAEG;IACH,WAAW,EAAE;QACX,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,SAAS,EAAE,YAAY,EAAE,aAAa,EAAE;QAC7D,WAAW,EAAE,mCAAmC;KACjD;IACD;;OAEG;IACH,YAAY,EAAE;QACZ,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,WAAW,EAAE,YAAY,EAAE,aAAa,EAAE;QAC/D,WAAW,EAAE,2DAA2D;KACzE;IACD;;OAEG;IACH,MAAM,EAAE;QACN,IAAI,EAAE,aAAa;QACnB,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,+CAA+C;KAC7D;IACD;;OAEG;IACH,aAAa,EAAE;QACb,IAAI,EAAE,aAAa;QACnB,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,mDAAmD;KACjE;CACF,EACD;IACE,eAAe,EAAE,IAAI;IACrB;;OAEG;IACH,kBAAkB,EAAE,qBAAqB;CAC1C,CACF,CAAA;AAED,kBAAe,qBAAqB,CAAA"}
package/esm/TrixTextSearchAdapter/TrixTextSearchAdapter.d.ts CHANGED
@@ -9,6 +9,11 @@ export default class TrixTextSearchAdapter extends BaseAdapter implements BaseTe
9
9
  trixJs: Trix;
10
10
  tracksNames?: string[];
11
11
  constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
12
+ /**
13
+ * Returns list of results
14
+ * @param args - search options/arguments include: search query
15
+ * limit of results to return, searchType...prefix | full | exact", etc.
16
+ */
12
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  searchIndex(args: BaseArgs): Promise<BaseResult[]>;
13
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  freeResources(): void;
14
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  }
package/esm/TrixTextSearchAdapter/TrixTextSearchAdapter.js CHANGED
@@ -33,7 +33,7 @@ export default class TrixTextSearchAdapter extends BaseAdapter {
33
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  }
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  this.trixJs = new Trix(openLocation(ixxFilePath), openLocation(ixFilePath), 1500);
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  }
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- /*
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+ /**
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  * Returns list of results
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  * @param args - search options/arguments include: search query
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  * limit of results to return, searchType...prefix | full | exact", etc.
package/esm/TrixTextSearchAdapter/configSchema.d.ts CHANGED
@@ -1,2 +1,2 @@
1
- declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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- export default _default;
1
+ declare const TrixTextSearchAdapter: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
2
+ export default TrixTextSearchAdapter;
package/esm/TrixTextSearchAdapter/configSchema.js CHANGED
@@ -1,29 +1,55 @@
1
1
  import { ConfigurationSchema } from '@jbrowse/core/configuration';
2
- export default ConfigurationSchema('TrixTextSearchAdapter', {
2
+ /**
3
+ * #config TrixTextSearchAdapter
4
+ */
5
+ function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
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+ const TrixTextSearchAdapter = ConfigurationSchema('TrixTextSearchAdapter', {
7
+ /**
8
+ * #slot
9
+ */
3
10
  ixFilePath: {
4
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  type: 'fileLocation',
5
12
  defaultValue: { uri: 'out.ix', locationType: 'UriLocation' },
6
13
  description: 'the location of the trix ix file',
7
14
  },
15
+ /**
16
+ * #slot
17
+ */
8
18
  ixxFilePath: {
9
19
  type: 'fileLocation',
10
20
  defaultValue: { uri: 'out.ixx', locationType: 'UriLocation' },
11
21
  description: 'the location of the trix ixx file',
12
22
  },
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+ /**
24
+ * #slot
25
+ */
13
26
  metaFilePath: {
14
27
  type: 'fileLocation',
15
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  defaultValue: { uri: 'meta.json', locationType: 'UriLocation' },
16
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  description: 'the location of the metadata json file for the trix index',
17
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  },
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+ /**
32
+ * #slot
33
+ */
18
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  tracks: {
19
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  type: 'stringArray',
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  defaultValue: [],
21
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  description: 'List of tracks covered by text search adapter',
22
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  },
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+ /**
40
+ * #slot
41
+ */
23
42
  assemblyNames: {
24
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  type: 'stringArray',
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  defaultValue: [],
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  description: 'List of assemblies covered by text search adapter',
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  },
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- }, { explicitlyTyped: true, explicitIdentifier: 'textSearchAdapterId' });
47
+ }, {
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+ explicitlyTyped: true,
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+ /**
50
+ * #identifier
51
+ */
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+ explicitIdentifier: 'textSearchAdapterId',
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+ });
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+ export default TrixTextSearchAdapter;
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  //# sourceMappingURL=configSchema.js.map
package/esm/TrixTextSearchAdapter/configSchema.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/TrixTextSearchAdapter/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE,eAAe,mBAAmB,CAChC,uBAAuB,EACvB;IACE,UAAU,EAAE;QACV,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,QAAQ,EAAE,YAAY,EAAE,aAAa,EAAE;QAC5D,WAAW,EAAE,kCAAkC;KAChD;IACD,WAAW,EAAE;QACX,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,SAAS,EAAE,YAAY,EAAE,aAAa,EAAE;QAC7D,WAAW,EAAE,mCAAmC;KACjD;IACD,YAAY,EAAE;QACZ,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,WAAW,EAAE,YAAY,EAAE,aAAa,EAAE;QAC/D,WAAW,EAAE,2DAA2D;KACzE;IACD,MAAM,EAAE;QACN,IAAI,EAAE,aAAa;QACnB,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,+CAA+C;KAC7D;IACD,aAAa,EAAE;QACb,IAAI,EAAE,aAAa;QACnB,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,mDAAmD;KACjE;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,kBAAkB,EAAE,qBAAqB,EAAE,CACrE,CAAA"}
1
+ {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/TrixTextSearchAdapter/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,qBAAqB,GAAG,mBAAmB,CAC/C,uBAAuB,EACvB;IACE;;OAEG;IACH,UAAU,EAAE;QACV,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,QAAQ,EAAE,YAAY,EAAE,aAAa,EAAE;QAC5D,WAAW,EAAE,kCAAkC;KAChD;IACD;;OAEG;IACH,WAAW,EAAE;QACX,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,SAAS,EAAE,YAAY,EAAE,aAAa,EAAE;QAC7D,WAAW,EAAE,mCAAmC;KACjD;IACD;;OAEG;IACH,YAAY,EAAE;QACZ,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,WAAW,EAAE,YAAY,EAAE,aAAa,EAAE;QAC/D,WAAW,EAAE,2DAA2D;KACzE;IACD;;OAEG;IACH,MAAM,EAAE;QACN,IAAI,EAAE,aAAa;QACnB,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,+CAA+C;KAC7D;IACD;;OAEG;IACH,aAAa,EAAE;QACb,IAAI,EAAE,aAAa;QACnB,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,mDAAmD;KACjE;CACF,EACD;IACE,eAAe,EAAE,IAAI;IACrB;;OAEG;IACH,kBAAkB,EAAE,qBAAqB;CAC1C,CACF,CAAA;AAED,eAAe,qBAAqB,CAAA"}
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-trix",
3
- "version": "2.1.6",
3
+ "version": "2.2.0",
4
4
  "description": "JBrowse 2 trix text search adapter",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -54,5 +54,5 @@
54
54
  "distModule": "esm/index.js",
55
55
  "srcModule": "src/index.ts",
56
56
  "module": "esm/index.js",
57
- "gitHead": "df810d2a4f057adcd8f5345d54972508fba007a7"
57
+ "gitHead": "cf31db8d833117f8822510340664fb3f045975cb"
58
58
  }
package/src/TrixTextSearchAdapter/TrixTextSearchAdapter.ts CHANGED
@@ -62,7 +62,7 @@ export default class TrixTextSearchAdapter
62
62
  )
63
63
  }
64
64
 
65
- /*
65
+ /**
66
66
  * Returns list of results
67
67
  * @param args - search options/arguments include: search query
68
68
  * limit of results to return, searchType...prefix | full | exact", etc.
package/src/TrixTextSearchAdapter/configSchema.ts CHANGED
@@ -1,33 +1,61 @@
1
1
  import { ConfigurationSchema } from '@jbrowse/core/configuration'
2
2
 
3
- export default ConfigurationSchema(
3
+ /**
4
+ * #config TrixTextSearchAdapter
5
+ */
6
+ function x() {} // eslint-disable-line @typescript-eslint/no-unused-vars
7
+
8
+ const TrixTextSearchAdapter = ConfigurationSchema(
4
9
  'TrixTextSearchAdapter',
5
10
  {
11
+ /**
12
+ * #slot
13
+ */
6
14
  ixFilePath: {
7
15
  type: 'fileLocation',
8
16
  defaultValue: { uri: 'out.ix', locationType: 'UriLocation' },
9
17
  description: 'the location of the trix ix file',
10
18
  },
19
+ /**
20
+ * #slot
21
+ */
11
22
  ixxFilePath: {
12
23
  type: 'fileLocation',
13
24
  defaultValue: { uri: 'out.ixx', locationType: 'UriLocation' },
14
25
  description: 'the location of the trix ixx file',
15
26
  },
27
+ /**
28
+ * #slot
29
+ */
16
30
  metaFilePath: {
17
31
  type: 'fileLocation',
18
32
  defaultValue: { uri: 'meta.json', locationType: 'UriLocation' },
19
33
  description: 'the location of the metadata json file for the trix index',
20
34
  },
35
+ /**
36
+ * #slot
37
+ */
21
38
  tracks: {
22
39
  type: 'stringArray',
23
40
  defaultValue: [],
24
41
  description: 'List of tracks covered by text search adapter',
25
42
  },
43
+ /**
44
+ * #slot
45
+ */
26
46
  assemblyNames: {
27
47
  type: 'stringArray',
28
48
  defaultValue: [],
29
49
  description: 'List of assemblies covered by text search adapter',
30
50
  },
31
51
  },
32
- { explicitlyTyped: true, explicitIdentifier: 'textSearchAdapterId' },
52
+ {
53
+ explicitlyTyped: true,
54
+ /**
55
+ * #identifier
56
+ */
57
+ explicitIdentifier: 'textSearchAdapterId',
58
+ },
33
59
  )
60
+
61
+ export default TrixTextSearchAdapter