@jbrowse/plugin-trix 2.1.0 → 2.1.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -1,80 +1,13 @@
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  "use strict";
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- var __extends = (this && this.__extends) || (function () {
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- var extendStatics = function (d, b) {
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- extendStatics = Object.setPrototypeOf ||
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- ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
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- function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
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- return extendStatics(d, b);
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- };
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- return function (d, b) {
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- if (typeof b !== "function" && b !== null)
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- throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
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- extendStatics(d, b);
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- function __() { this.constructor = d; }
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- d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
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- };
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- })();
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- var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
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- function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
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- return new (P || (P = Promise))(function (resolve, reject) {
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- function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
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- function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
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- function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
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- step((generator = generator.apply(thisArg, _arguments || [])).next());
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- });
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- };
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- var __generator = (this && this.__generator) || function (thisArg, body) {
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- var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
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- return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
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- function verb(n) { return function (v) { return step([n, v]); }; }
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- function step(op) {
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- if (f) throw new TypeError("Generator is already executing.");
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- while (_) try {
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- if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
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- if (y = 0, t) op = [op[0] & 2, t.value];
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- switch (op[0]) {
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- case 0: case 1: t = op; break;
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- case 4: _.label++; return { value: op[1], done: false };
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- case 5: _.label++; y = op[1]; op = [0]; continue;
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- case 7: op = _.ops.pop(); _.trys.pop(); continue;
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- default:
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- if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
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- if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
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- if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
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- if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
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- if (t[2]) _.ops.pop();
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- _.trys.pop(); continue;
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- }
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- op = body.call(thisArg, _);
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- } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
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- if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
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- }
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- };
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- var __read = (this && this.__read) || function (o, n) {
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- var m = typeof Symbol === "function" && o[Symbol.iterator];
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- if (!m) return o;
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- var i = m.call(o), r, ar = [], e;
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- try {
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- while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
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- }
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- catch (error) { e = { error: error }; }
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- finally {
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- try {
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- if (r && !r.done && (m = i["return"])) m.call(i);
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- }
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- finally { if (e) throw e.error; }
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- }
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- return ar;
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- };
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  var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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- var trix_1 = __importDefault(require("@gmod/trix"));
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- var BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
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- var io_1 = require("@jbrowse/core/util/io");
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- var BaseResults_1 = __importDefault(require("@jbrowse/core/TextSearch/BaseResults"));
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- var configuration_1 = require("@jbrowse/core/configuration");
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+ const trix_1 = __importDefault(require("@gmod/trix"));
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+ const BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
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+ const io_1 = require("@jbrowse/core/util/io");
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+ const BaseResults_1 = __importDefault(require("@jbrowse/core/TextSearch/BaseResults"));
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+ const configuration_1 = require("@jbrowse/core/configuration");
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  function decodeURIComponentNoThrow(uri) {
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  try {
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  return decodeURIComponent(uri);
@@ -84,89 +17,67 @@ function decodeURIComponentNoThrow(uri) {
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  return uri;
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  }
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  }
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- function shorten(str, term, w) {
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- if (w === void 0) { w = 15; }
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- var tidx = str.toLowerCase().indexOf(term);
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+ function shorten(str, term, w = 15) {
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+ const tidx = str.toLowerCase().indexOf(term);
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  return str.length < 40
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  ? str
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  : (Math.max(0, tidx - w) > 0 ? '...' : '') +
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  str.slice(Math.max(0, tidx - w), tidx + term.length + w).trim() +
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  (tidx + term.length < str.length ? '...' : '');
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  }
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- var TrixTextSearchAdapter = /** @class */ (function (_super) {
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- __extends(TrixTextSearchAdapter, _super);
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- function TrixTextSearchAdapter(config, getSubAdapter, pluginManager) {
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- var _this = _super.call(this, config, getSubAdapter, pluginManager) || this;
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- var ixFilePath = (0, configuration_1.readConfObject)(config, 'ixFilePath');
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- var ixxFilePath = (0, configuration_1.readConfObject)(config, 'ixxFilePath');
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+ class TrixTextSearchAdapter extends BaseAdapter_1.BaseAdapter {
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+ constructor(config, getSubAdapter, pluginManager) {
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+ super(config, getSubAdapter, pluginManager);
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+ const ixFilePath = (0, configuration_1.readConfObject)(config, 'ixFilePath');
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+ const ixxFilePath = (0, configuration_1.readConfObject)(config, 'ixxFilePath');
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  if (!ixFilePath) {
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  throw new Error('must provide out.ix');
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  }
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  if (!ixxFilePath) {
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  throw new Error('must provide out.ixx');
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  }
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- _this.trixJs = new trix_1.default((0, io_1.openLocation)(ixxFilePath), (0, io_1.openLocation)(ixFilePath), 1500);
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- return _this;
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+ this.trixJs = new trix_1.default((0, io_1.openLocation)(ixxFilePath), (0, io_1.openLocation)(ixFilePath), 1500);
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  }
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  /*
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  * Returns list of results
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  * @param args - search options/arguments include: search query
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  * limit of results to return, searchType...prefix | full | exact", etc.
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  */
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- TrixTextSearchAdapter.prototype.searchIndex = function (args) {
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- return __awaiter(this, void 0, void 0, function () {
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- var query, strs, results, formatted;
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- return __generator(this, function (_a) {
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- switch (_a.label) {
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- case 0:
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- query = args.queryString.toLowerCase();
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- strs = query.split(' ');
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- return [4 /*yield*/, this.trixJs.search(query)];
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- case 1:
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- results = _a.sent();
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- formatted = results
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- // if multi-word search try to filter out relevant items
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- .filter(function (_a) {
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- var _b = __read(_a, 2), data = _b[1];
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- return strs.every(function (r) {
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- return decodeURIComponentNoThrow(data).toLowerCase().includes(r);
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- });
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- })
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- .map(function (_a) {
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- var _b = __read(_a, 2), term = _b[0], data = _b[1];
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- var result = JSON.parse(data.replace(/\|/g, ','));
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- var _c = __read(result.map(function (record) {
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- return decodeURIComponentNoThrow(record);
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- })), loc = _c[0], trackId = _c[1], rest = _c.slice(2);
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- var labelFieldIdx = rest.findIndex(function (elt) { return !!elt; });
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- var contextIdx = rest
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- .map(function (elt) { return elt.toLowerCase(); })
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- .findIndex(function (f) { return f.indexOf(term.toLowerCase()) !== -1; });
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- var labelField = rest[labelFieldIdx];
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- var contextField = rest[contextIdx];
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- var context = contextIdx !== -1 ? shorten(contextField, term) : undefined;
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- var label = shorten(labelField, term);
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- var displayString = !context || label.toLowerCase() === context.toLowerCase()
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- ? label
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- : "".concat(label, " (").concat(context, ")");
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- return new BaseResults_1.default({
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- locString: loc,
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- label: labelField,
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- displayString: displayString,
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- matchedObject: result.map(function (record) { return decodeURIComponent(record); }),
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- trackId: trackId,
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- });
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- });
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- if (args.searchType === 'exact') {
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- return [2 /*return*/, formatted.filter(function (res) { return res.getLabel().toLowerCase() === args.queryString.toLowerCase(); })];
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- }
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- return [2 /*return*/, formatted];
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- }
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+ async searchIndex(args) {
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+ const query = args.queryString.toLowerCase();
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+ const strs = query.split(' ');
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+ const results = await this.trixJs.search(query);
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+ const formatted = results
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+ // if multi-word search try to filter out relevant items
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+ .filter(([, data]) => strs.every(r => decodeURIComponentNoThrow(data).toLowerCase().includes(r)))
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+ .map(([term, data]) => {
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+ const result = JSON.parse(data.replace(/\|/g, ','));
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+ const [loc, trackId, ...rest] = result.map(record => decodeURIComponentNoThrow(record));
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+ const labelFieldIdx = rest.findIndex(elt => !!elt);
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+ const contextIdx = rest
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+ .map(elt => elt.toLowerCase())
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+ .findIndex(f => f.indexOf(term.toLowerCase()) !== -1);
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+ const labelField = rest[labelFieldIdx];
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+ const contextField = rest[contextIdx];
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+ const context = contextIdx !== -1 ? shorten(contextField, term) : undefined;
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+ const label = shorten(labelField, term);
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+ const displayString = !context || label.toLowerCase() === context.toLowerCase()
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+ ? label
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+ : `${label} (${context})`;
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+ return new BaseResults_1.default({
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+ locString: loc,
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+ label: labelField,
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+ displayString,
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+ matchedObject: result.map(record => decodeURIComponent(record)),
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+ trackId,
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  });
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  });
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- };
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- TrixTextSearchAdapter.prototype.freeResources = function () { };
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- return TrixTextSearchAdapter;
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- }(BaseAdapter_1.BaseAdapter));
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+ if (args.searchType === 'exact') {
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+ return formatted.filter(res => res.getLabel().toLowerCase() === args.queryString.toLowerCase());
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+ }
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+ return formatted;
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+ }
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+ freeResources() { }
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+ }
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  exports.default = TrixTextSearchAdapter;
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  //# sourceMappingURL=TrixTextSearchAdapter.js.map
@@ -1 +1 @@
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1
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@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
- var configuration_1 = require("@jbrowse/core/configuration");
3
+ const configuration_1 = require("@jbrowse/core/configuration");
4
4
  exports.default = (0, configuration_1.ConfigurationSchema)('TrixTextSearchAdapter', {
5
5
  ixFilePath: {
6
6
  type: 'fileLocation',
@@ -1 +1 @@
1
- {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/TrixTextSearchAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,6DAAiE;AAEjE,kBAAe,IAAA,mCAAmB,EAChC,uBAAuB,EACvB;IACE,UAAU,EAAE;QACV,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,QAAQ,EAAE,YAAY,EAAE,aAAa,EAAE;QAC5D,WAAW,EAAE,kCAAkC;KAChD;IACD,WAAW,EAAE;QACX,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,SAAS,EAAE,YAAY,EAAE,aAAa,EAAE;QAC7D,WAAW,EAAE,mCAAmC;KACjD;IACD,YAAY,EAAE;QACZ,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,WAAW,EAAE,YAAY,EAAE,aAAa,EAAE;QAC/D,WAAW,EAAE,2DAA2D;KACzE;IACD,MAAM,EAAE;QACN,IAAI,EAAE,aAAa;QACnB,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,+CAA+C;KAC7D;IACD,aAAa,EAAE;QACb,IAAI,EAAE,aAAa;QACnB,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,mDAAmD;KACjE;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,kBAAkB,EAAE,qBAAqB,EAAE,CACrE,CAAA"}
1
+ {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/TrixTextSearchAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE,kBAAe,IAAA,mCAAmB,EAChC,uBAAuB,EACvB;IACE,UAAU,EAAE;QACV,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,QAAQ,EAAE,YAAY,EAAE,aAAa,EAAE;QAC5D,WAAW,EAAE,kCAAkC;KAChD;IACD,WAAW,EAAE;QACX,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,SAAS,EAAE,YAAY,EAAE,aAAa,EAAE;QAC7D,WAAW,EAAE,mCAAmC;KACjD;IACD,YAAY,EAAE;QACZ,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,WAAW,EAAE,YAAY,EAAE,aAAa,EAAE;QAC/D,WAAW,EAAE,2DAA2D;KACzE;IACD,MAAM,EAAE;QACN,IAAI,EAAE,aAAa;QACnB,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,+CAA+C;KAC7D;IACD,aAAa,EAAE;QACb,IAAI,EAAE,aAAa;QACnB,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,mDAAmD;KACjE;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,kBAAkB,EAAE,qBAAqB,EAAE,CACrE,CAAA"}
package/dist/index.js CHANGED
@@ -1,44 +1,24 @@
1
1
  "use strict";
2
- var __extends = (this && this.__extends) || (function () {
3
- var extendStatics = function (d, b) {
4
- extendStatics = Object.setPrototypeOf ||
5
- ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
6
- function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
7
- return extendStatics(d, b);
8
- };
9
- return function (d, b) {
10
- if (typeof b !== "function" && b !== null)
11
- throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
12
- extendStatics(d, b);
13
- function __() { this.constructor = d; }
14
- d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
15
- };
16
- })();
17
2
  var __importDefault = (this && this.__importDefault) || function (mod) {
18
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
19
4
  };
20
5
  Object.defineProperty(exports, "__esModule", { value: true });
21
- var TextSearchAdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/TextSearchAdapterType"));
22
- var Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
23
- var TrixTextSearchAdapter_1 = require("./TrixTextSearchAdapter");
24
- var default_1 = /** @class */ (function (_super) {
25
- __extends(default_1, _super);
26
- function default_1() {
27
- var _this = _super !== null && _super.apply(this, arguments) || this;
28
- _this.name = 'TrixPlugin';
29
- return _this;
6
+ const TextSearchAdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/TextSearchAdapterType"));
7
+ const Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
8
+ const TrixTextSearchAdapter_1 = require("./TrixTextSearchAdapter");
9
+ class default_1 extends Plugin_1.default {
10
+ constructor() {
11
+ super(...arguments);
12
+ this.name = 'TrixPlugin';
30
13
  }
31
- default_1.prototype.install = function (pluginManager) {
32
- pluginManager.addTextSearchAdapterType(function () {
33
- return new TextSearchAdapterType_1.default({
34
- name: 'TrixTextSearchAdapter',
35
- configSchema: TrixTextSearchAdapter_1.configSchema,
36
- AdapterClass: TrixTextSearchAdapter_1.AdapterClass,
37
- description: 'Trix adapter',
38
- });
39
- });
40
- };
41
- return default_1;
42
- }(Plugin_1.default));
14
+ install(pluginManager) {
15
+ pluginManager.addTextSearchAdapterType(() => new TextSearchAdapterType_1.default({
16
+ name: 'TrixTextSearchAdapter',
17
+ configSchema: TrixTextSearchAdapter_1.configSchema,
18
+ AdapterClass: TrixTextSearchAdapter_1.AdapterClass,
19
+ description: 'Trix adapter',
20
+ }));
21
+ }
22
+ }
43
23
  exports.default = default_1;
44
24
  //# sourceMappingURL=index.js.map
package/dist/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;AAAA,oHAA6F;AAC7F,gEAAyC;AAEzC,iEAGgC;AAEhC;IAA6B,6BAAM;IAAnC;QAAA,qEAcC;QAbC,UAAI,GAAG,YAAY,CAAA;;IAarB,CAAC;IAXC,2BAAO,GAAP,UAAQ,aAA4B;QAClC,aAAa,CAAC,wBAAwB,CACpC;YACE,OAAA,IAAI,+BAAqB,CAAC;gBACxB,IAAI,EAAE,uBAAuB;gBAC7B,YAAY,EAAE,oCAAuB;gBACrC,YAAY,EAAE,oCAA0B;gBACxC,WAAW,EAAE,cAAc;aAC5B,CAAC;QALF,CAKE,CACL,CAAA;IACH,CAAC;IACH,gBAAC;AAAD,CAAC,AAdD,CAA6B,gBAAM,GAclC"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;AAAA,sHAA6F;AAC7F,kEAAyC;AAEzC,mEAGgC;AAEhC,eAAqB,SAAQ,gBAAM;IAAnC;;QACE,SAAI,GAAG,YAAY,CAAA;IAarB,CAAC;IAXC,OAAO,CAAC,aAA4B;QAClC,aAAa,CAAC,wBAAwB,CACpC,GAAG,EAAE,CACH,IAAI,+BAAqB,CAAC;YACxB,IAAI,EAAE,uBAAuB;YAC7B,YAAY,EAAE,oCAAuB;YACrC,YAAY,EAAE,oCAA0B;YACxC,WAAW,EAAE,cAAc;SAC5B,CAAC,CACL,CAAA;IACH,CAAC;CACF;AAdD,4BAcC"}
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-trix",
3
- "version": "2.1.0",
3
+ "version": "2.1.2",
4
4
  "description": "JBrowse 2 trix text search adapter",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -46,7 +46,6 @@
46
46
  "react": ">=16.8.0"
47
47
  },
48
48
  "dependencies": {
49
- "@babel/runtime": "^7.17.9",
50
49
  "@gmod/trix": "^2.0.4"
51
50
  },
52
51
  "publishConfig": {
@@ -55,5 +54,5 @@
55
54
  "distModule": "esm/index.js",
56
55
  "srcModule": "src/index.ts",
57
56
  "module": "esm/index.js",
58
- "gitHead": "0db0462fa1f9f15ab4869da085bcab032b9483c3"
57
+ "gitHead": "449b17325c9a4a97181f7ddddf48e80219f03b8d"
59
58
  }