@jbrowse/plugin-trix 1.7.1 → 1.7.5

package/dist/TrixTextSearchAdapter/TrixTextSearchAdapter.js

@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
@@ -39,7 +39,7 @@ var _BaseResults = _interopRequireDefault(require("@jbrowse/core/TextSearch/Base
 
 var _configuration = require("@jbrowse/core/configuration");
 
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
 
 function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
 
@@ -59,18 +59,18 @@ function shorten(str, term) {
 }
 
 var TrixTextSearchAdapter = /*#__PURE__*/function (_BaseAdapter) {
-  (0, _inherits2["default"])(TrixTextSearchAdapter, _BaseAdapter);
+  (0, _inherits2.default)(TrixTextSearchAdapter, _BaseAdapter);
 
   var _super = _createSuper(TrixTextSearchAdapter);
 
   function TrixTextSearchAdapter(config, getSubAdapter, pluginManager) {
     var _this;
 
-    (0, _classCallCheck2["default"])(this, TrixTextSearchAdapter);
+    (0, _classCallCheck2.default)(this, TrixTextSearchAdapter);
     _this = _super.call(this, config, getSubAdapter, pluginManager);
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "indexingAttributes", void 0);
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "trixJs", void 0);
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "tracksNames", void 0);
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "indexingAttributes", void 0);
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "trixJs", void 0);
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "tracksNames", void 0);
     var ixFilePath = (0, _configuration.readConfObject)(config, 'ixFilePath');
     var ixxFilePath = (0, _configuration.readConfObject)(config, 'ixxFilePath');
 
@@ -82,7 +82,7 @@ var TrixTextSearchAdapter = /*#__PURE__*/function (_BaseAdapter) {
       throw new Error('must provide out.ixx');
     }
 
-    _this.trixJs = new _trix["default"]((0, _io.openLocation)(ixxFilePath), (0, _io.openLocation)(ixFilePath), 1500);
+    _this.trixJs = new _trix.default((0, _io.openLocation)(ixxFilePath), (0, _io.openLocation)(ixFilePath), 1500);
     return _this;
   }
   /*
@@ -92,12 +92,12 @@ var TrixTextSearchAdapter = /*#__PURE__*/function (_BaseAdapter) {
    */
 
 
-  (0, _createClass2["default"])(TrixTextSearchAdapter, [{
+  (0, _createClass2.default)(TrixTextSearchAdapter, [{
     key: "searchIndex",
     value: function () {
-      var _searchIndex = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(args) {
+      var _searchIndex = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(args) {
         var query, strs, results, formatted;
-        return _regenerator["default"].wrap(function _callee$(_context) {
+        return _regenerator.default.wrap(function _callee$(_context) {
           while (1) {
             switch (_context.prev = _context.next) {
               case 0:
@@ -110,14 +110,14 @@ var TrixTextSearchAdapter = /*#__PURE__*/function (_BaseAdapter) {
                 results = _context.sent;
                 formatted = results // if multi-word search try to filter out relevant items
                 .filter(function (_ref) {
-                  var _ref2 = (0, _slicedToArray2["default"])(_ref, 2),
+                  var _ref2 = (0, _slicedToArray2.default)(_ref, 2),
                       data = _ref2[1];
 
                   return strs.every(function (r) {
                     return decodeURIComponentNoThrow(data).toLowerCase().includes(r);
                   });
                 }).map(function (_ref3) {
-                  var _ref4 = (0, _slicedToArray2["default"])(_ref3, 2),
+                  var _ref4 = (0, _slicedToArray2.default)(_ref3, 2),
                       term = _ref4[0],
                       data = _ref4[1];
 
@@ -126,7 +126,7 @@ var TrixTextSearchAdapter = /*#__PURE__*/function (_BaseAdapter) {
                   var _result$map = result.map(function (record) {
                     return decodeURIComponentNoThrow(record);
                   }),
-                      _result$map2 = (0, _toArray2["default"])(_result$map),
+                      _result$map2 = (0, _toArray2.default)(_result$map),
                       loc = _result$map2[0],
                       trackId = _result$map2[1],
                       rest = _result$map2.slice(2);
@@ -144,7 +144,7 @@ var TrixTextSearchAdapter = /*#__PURE__*/function (_BaseAdapter) {
                   var context = contextIdx !== -1 ? shorten(contextField, term) : undefined;
                   var label = shorten(labelField, term);
                   var displayString = !context || label.toLowerCase() === context.toLowerCase() ? label : "".concat(label, " (").concat(context, ")");
-                  return new _BaseResults["default"]({
+                  return new _BaseResults.default({
                     locString: loc,
                     label: labelField,
                     displayString: displayString,
@@ -188,4 +188,4 @@ var TrixTextSearchAdapter = /*#__PURE__*/function (_BaseAdapter) {
   return TrixTextSearchAdapter;
 }(_BaseAdapter2.BaseAdapter);
 
-exports["default"] = TrixTextSearchAdapter;
+exports.default = TrixTextSearchAdapter;

package/dist/TrixTextSearchAdapter/TrixTextSearchAdapter.test.js

@@ -14,13 +14,13 @@ var _TrixTextSearchAdapter = _interopRequireDefault(require("./TrixTextSearchAda
 
 var _configSchema = _interopRequireDefault(require("./configSchema"));
 
-test('adapter can fetch output files', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
+test('adapter can fetch output files', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
   var rootTemplate, urlPath, args, adapter, results, results2, test2;
-  return _regenerator["default"].wrap(function _callee$(_context) {
+  return _regenerator.default.wrap(function _callee$(_context) {
     while (1) {
       switch (_context.prev = _context.next) {
         case 0:
-          rootTemplate = _path["default"].join(__dirname, '..', '..', '..', '..', 'test_data', 'volvox', 'trix').replace(/\\/g, '\\\\');
+          rootTemplate = _path.default.join(__dirname, '..', '..', '..', '..', 'test_data', 'volvox', 'trix').replace(/\\/g, '\\\\');
           urlPath = decodeURI(new URL("file://".concat(rootTemplate)).href);
           args = {
             type: 'TrixTextSearchAdapter',
@@ -39,7 +39,7 @@ test('adapter can fetch output files', /*#__PURE__*/(0, _asyncToGenerator2["defa
             }
           }; // create adapter
 
-          adapter = new _TrixTextSearchAdapter["default"](_configSchema["default"].create(args)); // prefix search
+          adapter = new _TrixTextSearchAdapter.default(_configSchema.default.create(args)); // prefix search
 
           _context.next = 6;
           return adapter.searchIndex({
@@ -49,7 +49,7 @@ test('adapter can fetch output files', /*#__PURE__*/(0, _asyncToGenerator2["defa
         case 6:
           results = _context.sent;
           // check results are of type BaseResult for prefix search
-          expect(results[0] instanceof _BaseResults["default"]).toBeTruthy();
+          expect(results[0] instanceof _BaseResults.default).toBeTruthy();
           expect(results[0].getLabel()).toEqual('Apple2');
           expect(results[1].getLabel()).toEqual('Apple3'); // exact search
 
@@ -63,7 +63,7 @@ test('adapter can fetch output files', /*#__PURE__*/(0, _asyncToGenerator2["defa
           // check results are of type location for exact search
           expect(results2.length).toEqual(1);
           test2 = results2[0];
-          expect(test2 instanceof _BaseResults["default"]).toBeTruthy();
+          expect(test2 instanceof _BaseResults.default).toBeTruthy();
           expect(test2.getLabel()).toEqual('Apple3');
           expect(test2.getLocation()).toEqual('ctgA:17400..23000');
 

package/dist/TrixTextSearchAdapter/configSchema.js

@@ -3,7 +3,7 @@
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _configuration = require("@jbrowse/core/configuration");
 
@@ -47,4 +47,4 @@ var _default = (0, _configuration.ConfigurationSchema)('TrixTextSearchAdapter',
   explicitIdentifier: 'textSearchAdapterId'
 });
 
-exports["default"] = _default;
+exports.default = _default;

package/dist/TrixTextSearchAdapter/index.js

@@ -8,13 +8,13 @@ Object.defineProperty(exports, "__esModule", {
 Object.defineProperty(exports, "AdapterClass", {
   enumerable: true,
   get: function get() {
-    return _TrixTextSearchAdapter["default"];
+    return _TrixTextSearchAdapter.default;
   }
 });
 Object.defineProperty(exports, "configSchema", {
   enumerable: true,
   get: function get() {
-    return _configSchema["default"];
+    return _configSchema.default;
   }
 });
 

package/dist/index.js

@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
@@ -27,34 +27,34 @@ var _Plugin2 = _interopRequireDefault(require("@jbrowse/core/Plugin"));
 
 var _TrixTextSearchAdapter = require("./TrixTextSearchAdapter");
 
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
 
 function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
 
 var _default = /*#__PURE__*/function (_Plugin) {
-  (0, _inherits2["default"])(_default, _Plugin);
+  (0, _inherits2.default)(_default, _Plugin);
 
   var _super = _createSuper(_default);
 
   function _default() {
     var _this;
 
-    (0, _classCallCheck2["default"])(this, _default);
+    (0, _classCallCheck2.default)(this, _default);
 
     for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
       args[_key] = arguments[_key];
     }
 
     _this = _super.call.apply(_super, [this].concat(args));
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "name", 'TrixPlugin');
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'TrixPlugin');
     return _this;
   }
 
-  (0, _createClass2["default"])(_default, [{
+  (0, _createClass2.default)(_default, [{
     key: "install",
     value: function install(pluginManager) {
       pluginManager.addTextSearchAdapterType(function () {
-        return new _TextSearchAdapterType["default"]({
+        return new _TextSearchAdapterType.default({
           name: 'TrixTextSearchAdapter',
           configSchema: _TrixTextSearchAdapter.configSchema,
           AdapterClass: _TrixTextSearchAdapter.AdapterClass,
@@ -64,6 +64,6 @@ var _default = /*#__PURE__*/function (_Plugin) {
     }
   }]);
   return _default;
-}(_Plugin2["default"]);
+}(_Plugin2.default);
 
-exports["default"] = _default;
+exports.default = _default;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-trix",
-  "version": "1.7.1",
+  "version": "1.7.5",
   "description": "JBrowse 2 trix text search adapter",
   "keywords": [
     "jbrowse",
@@ -42,10 +42,11 @@
     "react": ">=16.8.0"
   },
   "dependencies": {
-    "@gmod/trix": "^2.0.1"
+    "@babel/runtime": "^7.17.9",
+    "@gmod/trix": "^2.0.4"
   },
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "6da232090c90f22ac96fd464c33082c89b8da14b"
+  "gitHead": "2c3a1f0c95a47b24eba790eaeb49274caf297aeb"
 }

package/src/TrixTextSearchAdapter/TrixTextSearchAdapter.test.ts

@@ -31,7 +31,6 @@ test('adapter can fetch output files', async () => {
   const results = await adapter.searchIndex({
     queryString: 'apple',
   })
-
   // check results are of type BaseResult for prefix search
   expect(results[0] instanceof BaseResult).toBeTruthy()
   expect(results[0].getLabel()).toEqual('Apple2')