@jbrowse/plugin-sv-inspector 2.7.1 → 2.8.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -11,7 +11,6 @@ function defaultOnChordClick(feature, chordTrack, pluginManager) {
11
11
  const session = (0, util_1.getSession)(chordTrack);
12
12
  session.setSelection(feature);
13
13
  const view = (0, util_1.getContainingView)(chordTrack);
14
- // eslint-disable-next-line @typescript-eslint/no-explicit-any
15
14
  const viewType = pluginManager.getViewType('BreakpointSplitView');
16
15
  const viewSnapshot = viewType.snapshotFromBreakendFeature(feature, view);
17
16
  // try to center the offsetPx
@@ -43,14 +43,19 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
43
43
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
44
44
  columnFilters: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
45
45
  }, {
46
- readonly filters: any[]; /**
46
+ readonly filters: any[];
47
+ /**
48
+ * #property
49
+ */
50
+ setRowFullTextFilter(stringToFind: string): void; /**
47
51
  * #property
48
52
  */
49
- setRowFullTextFilter(stringToFind: string): void;
50
53
  rowPassesFilters(sheet: unknown, row: unknown): boolean;
51
54
  } & {
52
55
  addBlankColumnFilter(columnNumber: number): void;
53
- removeColumnFilter(filter: import("mobx-state-tree").IAnyType): boolean;
56
+ removeColumnFilter(filter: import("mobx-state-tree").IAnyType): boolean; /**
57
+ * #property
58
+ */
54
59
  clearAllFilters(): void;
55
60
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
56
61
  mode: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -381,9 +386,7 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
381
386
  setMinimized(flag: boolean): void;
382
387
  } & {
383
388
  width: number;
384
- rowMenuItems: import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/models/SpreadsheetView").MenuItemWithDisabledCallback[]; /**
385
- * #property
386
- */
389
+ rowMenuItems: import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/models/SpreadsheetView").MenuItemWithDisabledCallback[];
387
390
  } & {
388
391
  readonly readyToDisplay: boolean;
389
392
  readonly hideRowSelection: boolean;
@@ -647,9 +650,7 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
647
650
  } & {
648
651
  assemblyName: import("mobx-state-tree").ISimpleType<string>;
649
652
  }, {
650
- setRefName(newRefName: string): void; /**
651
- * #property
652
- */
653
+ setRefName(newRefName: string): void;
653
654
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
654
655
  scrollX: import("mobx-state-tree").IType<number | undefined, number, number>;
655
656
  scrollY: import("mobx-state-tree").IType<number | undefined, number, number>;
@@ -669,17 +670,19 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
669
670
  setWidth(newWidth: number): void;
670
671
  setMinimized(flag: boolean): void;
671
672
  } & {
672
- volatileWidth: number | undefined; /**
673
+ volatileWidth: number | undefined;
674
+ error: unknown; /**
673
675
  * #getter
674
676
  */
675
- error: unknown;
676
677
  } & {
677
678
  readonly width: number;
678
679
  readonly visibleSection: {
679
680
  rho: [number, number];
680
681
  theta: [number, number];
681
682
  };
682
- readonly circumferencePx: number;
683
+ readonly circumferencePx: number; /**
684
+ * #getter
685
+ */
683
686
  readonly radiusPx: number;
684
687
  readonly bpPerRadian: number;
685
688
  readonly pxPerRadian: number;
@@ -694,6 +697,9 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
694
697
  readonly figureDimensions: [number, number];
695
698
  readonly figureWidth: number;
696
699
  readonly figureHeight: number;
700
+ /**
701
+ * #action
702
+ */
697
703
  readonly elidedRegions: import("@jbrowse/plugin-circular-view/src/CircularView/models/slices").SliceRegion[];
698
704
  readonly assemblyNames: string[];
699
705
  readonly initialized: boolean;
@@ -723,9 +729,7 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
723
729
  } & {
724
730
  assemblyName: import("mobx-state-tree").ISimpleType<string>;
725
731
  }, {
726
- setRefName(newRefName: string): void; /**
727
- * #property
728
- */
732
+ setRefName(newRefName: string): void;
729
733
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>[]): void;
730
734
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
731
735
  toggleTrack(trackId: string): void;
@@ -30,7 +30,7 @@ function SvInspectorViewF(pluginManager) {
30
30
  const headerHeight = 52;
31
31
  const circularViewOptionsBarHeight = 52;
32
32
  return mobx_state_tree_1.types
33
- .compose(models_1.BaseViewModel, mobx_state_tree_1.types.model('SvInspectorView', {
33
+ .compose('SvInspectorView', models_1.BaseViewModel, mobx_state_tree_1.types.model({
34
34
  /**
35
35
  * #property
36
36
  */
@@ -6,7 +6,6 @@ function defaultOnChordClick(feature, chordTrack, pluginManager) {
6
6
  const session = getSession(chordTrack);
7
7
  session.setSelection(feature);
8
8
  const view = getContainingView(chordTrack);
9
- // eslint-disable-next-line @typescript-eslint/no-explicit-any
10
9
  const viewType = pluginManager.getViewType('BreakpointSplitView');
11
10
  const viewSnapshot = viewType.snapshotFromBreakendFeature(feature, view);
12
11
  // try to center the offsetPx
@@ -43,14 +43,19 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
43
43
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
44
44
  columnFilters: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
45
45
  }, {
46
- readonly filters: any[]; /**
46
+ readonly filters: any[];
47
+ /**
48
+ * #property
49
+ */
50
+ setRowFullTextFilter(stringToFind: string): void; /**
47
51
  * #property
48
52
  */
49
- setRowFullTextFilter(stringToFind: string): void;
50
53
  rowPassesFilters(sheet: unknown, row: unknown): boolean;
51
54
  } & {
52
55
  addBlankColumnFilter(columnNumber: number): void;
53
- removeColumnFilter(filter: import("mobx-state-tree").IAnyType): boolean;
56
+ removeColumnFilter(filter: import("mobx-state-tree").IAnyType): boolean; /**
57
+ * #property
58
+ */
54
59
  clearAllFilters(): void;
55
60
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
56
61
  mode: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -381,9 +386,7 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
381
386
  setMinimized(flag: boolean): void;
382
387
  } & {
383
388
  width: number;
384
- rowMenuItems: import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/models/SpreadsheetView").MenuItemWithDisabledCallback[]; /**
385
- * #property
386
- */
389
+ rowMenuItems: import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/models/SpreadsheetView").MenuItemWithDisabledCallback[];
387
390
  } & {
388
391
  readonly readyToDisplay: boolean;
389
392
  readonly hideRowSelection: boolean;
@@ -647,9 +650,7 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
647
650
  } & {
648
651
  assemblyName: import("mobx-state-tree").ISimpleType<string>;
649
652
  }, {
650
- setRefName(newRefName: string): void; /**
651
- * #property
652
- */
653
+ setRefName(newRefName: string): void;
653
654
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
654
655
  scrollX: import("mobx-state-tree").IType<number | undefined, number, number>;
655
656
  scrollY: import("mobx-state-tree").IType<number | undefined, number, number>;
@@ -669,17 +670,19 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
669
670
  setWidth(newWidth: number): void;
670
671
  setMinimized(flag: boolean): void;
671
672
  } & {
672
- volatileWidth: number | undefined; /**
673
+ volatileWidth: number | undefined;
674
+ error: unknown; /**
673
675
  * #getter
674
676
  */
675
- error: unknown;
676
677
  } & {
677
678
  readonly width: number;
678
679
  readonly visibleSection: {
679
680
  rho: [number, number];
680
681
  theta: [number, number];
681
682
  };
682
- readonly circumferencePx: number;
683
+ readonly circumferencePx: number; /**
684
+ * #getter
685
+ */
683
686
  readonly radiusPx: number;
684
687
  readonly bpPerRadian: number;
685
688
  readonly pxPerRadian: number;
@@ -694,6 +697,9 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
694
697
  readonly figureDimensions: [number, number];
695
698
  readonly figureWidth: number;
696
699
  readonly figureHeight: number;
700
+ /**
701
+ * #action
702
+ */
697
703
  readonly elidedRegions: import("@jbrowse/plugin-circular-view/src/CircularView/models/slices").SliceRegion[];
698
704
  readonly assemblyNames: string[];
699
705
  readonly initialized: boolean;
@@ -723,9 +729,7 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
723
729
  } & {
724
730
  assemblyName: import("mobx-state-tree").ISimpleType<string>;
725
731
  }, {
726
- setRefName(newRefName: string): void; /**
727
- * #property
728
- */
732
+ setRefName(newRefName: string): void;
729
733
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>[]): void;
730
734
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
731
735
  toggleTrack(trackId: string): void;
@@ -25,7 +25,7 @@ function SvInspectorViewF(pluginManager) {
25
25
  const headerHeight = 52;
26
26
  const circularViewOptionsBarHeight = 52;
27
27
  return types
28
- .compose(BaseViewModel, types.model('SvInspectorView', {
28
+ .compose('SvInspectorView', BaseViewModel, types.model({
29
29
  /**
30
30
  * #property
31
31
  */
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-sv-inspector",
3
- "version": "2.7.1",
3
+ "version": "2.8.0",
4
4
  "description": "JBrowse 2 SV inspector view",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -57,5 +57,5 @@
57
57
  "publishConfig": {
58
58
  "access": "public"
59
59
  },
60
- "gitHead": "2cda1611eebd12517f2a3cfc1b612face27005d4"
60
+ "gitHead": "ee8c2bdc8bd4f1a70b1eefda984f04a2830d9ca0"
61
61
  }