@jbrowse/plugin-sv-inspector 2.18.0 → 3.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -1,6 +1,5 @@
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- import React from 'react';
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  import type { SvInspectorViewModel } from '../model';
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  declare const CircularViewOptions: ({ svInspector, }: {
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  svInspector: SvInspectorViewModel;
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- }) => React.JSX.Element;
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+ }) => import("react/jsx-runtime").JSX.Element;
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  export default CircularViewOptions;
@@ -1,9 +1,6 @@
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  "use strict";
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- var __importDefault = (this && this.__importDefault) || function (mod) {
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- return (mod && mod.__esModule) ? mod : { "default": mod };
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- };
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  Object.defineProperty(exports, "__esModule", { value: true });
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- const react_1 = __importDefault(require("react"));
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+ const jsx_runtime_1 = require("react/jsx-runtime");
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  const material_1 = require("@mui/material");
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  const mobx_react_1 = require("mobx-react");
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  const mui_1 = require("tss-react/mui");
@@ -14,10 +11,8 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
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  }));
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  const CircularViewOptions = (0, mobx_react_1.observer)(function ({ svInspector, }) {
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  const { classes } = useStyles();
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- return (react_1.default.createElement(material_1.Grid, { container: true, className: classes.circularViewOptions, style: { height: svInspector.circularViewOptionsBarHeight } },
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- react_1.default.createElement(material_1.Grid, { item: true },
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- react_1.default.createElement(material_1.FormControlLabel, { control: react_1.default.createElement(material_1.Checkbox, { checked: svInspector.onlyDisplayRelevantRegionsInCircularView, onChange: e => {
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+ return ((0, jsx_runtime_1.jsx)(material_1.Grid, { container: true, className: classes.circularViewOptions, style: { height: svInspector.circularViewOptionsBarHeight }, children: (0, jsx_runtime_1.jsx)(material_1.Grid, { item: true, children: (0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { control: (0, jsx_runtime_1.jsx)(material_1.Checkbox, { checked: svInspector.onlyDisplayRelevantRegionsInCircularView, onChange: e => {
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  svInspector.setOnlyDisplayRelevantRegionsInCircularView(e.target.checked);
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- } }), label: "show only regions with data" }))));
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+ } }), label: "show only regions with data" }) }) }));
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  });
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  exports.default = CircularViewOptions;
@@ -1,6 +1,5 @@
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- import React from 'react';
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  import type { SvInspectorViewModel } from '../model';
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  declare const SvInspectorView: ({ model, }: {
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  model: SvInspectorViewModel;
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- }) => React.JSX.Element;
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+ }) => import("react/jsx-runtime").JSX.Element;
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  export default SvInspectorView;
@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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- const react_1 = __importDefault(require("react"));
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+ const jsx_runtime_1 = require("react/jsx-runtime");
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  const ui_1 = require("@jbrowse/core/ui");
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  const mobx_react_1 = require("mobx-react");
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  const mui_1 = require("tss-react/mui");
@@ -34,18 +34,11 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
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  const SvInspectorView = (0, mobx_react_1.observer)(function ({ model, }) {
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  const { classes } = useStyles();
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  const { SpreadsheetViewReactComponent, CircularViewReactComponent, showCircularView, } = model;
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- return (react_1.default.createElement("div", { className: classes.container },
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- react_1.default.createElement("div", { className: classes.viewsContainer },
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- react_1.default.createElement("div", { style: { width: model.spreadsheetView.width }, className: classes.container },
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- react_1.default.createElement(SpreadsheetViewReactComponent, { model: model.spreadsheetView })),
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- showCircularView ? (react_1.default.createElement(react_1.default.Fragment, null,
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- react_1.default.createElement(ui_1.ResizeHandle, { onDrag: distance => {
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- const ret1 = model.circularView.resizeWidth(-distance);
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- return model.spreadsheetView.resizeWidth(-ret1);
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- }, vertical: true, flexbox: true, className: classes.resizeHandleVert }),
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- react_1.default.createElement("div", { style: { width: model.circularView.width } },
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- react_1.default.createElement(CircularViewOptions_1.default, { svInspector: model }),
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- react_1.default.createElement(CircularViewReactComponent, { model: model.circularView })))) : null),
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- react_1.default.createElement(ui_1.ResizeHandle, { onDrag: model.resizeHeight, className: classes.resizeHandleHoriz })));
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+ return ((0, jsx_runtime_1.jsxs)("div", { className: classes.container, children: [(0, jsx_runtime_1.jsxs)("div", { className: classes.viewsContainer, children: [(0, jsx_runtime_1.jsx)("div", { style: {
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+ width: model.spreadsheetView.width,
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+ }, className: classes.container, children: (0, jsx_runtime_1.jsx)(SpreadsheetViewReactComponent, { model: model.spreadsheetView }) }), showCircularView ? ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(ui_1.ResizeHandle, { onDrag: distance => {
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+ const ret1 = model.circularView.resizeWidth(-distance);
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+ return model.spreadsheetView.resizeWidth(-ret1);
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+ }, vertical: true, flexbox: true, className: classes.resizeHandleVert }), (0, jsx_runtime_1.jsxs)("div", { style: { width: model.circularView.width }, children: [(0, jsx_runtime_1.jsx)(CircularViewOptions_1.default, { svInspector: model }), (0, jsx_runtime_1.jsx)(CircularViewReactComponent, { model: model.circularView })] })] })) : null] }), (0, jsx_runtime_1.jsx)(ui_1.ResizeHandle, { onDrag: model.resizeHeight, className: classes.resizeHandleHoriz })] }));
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  });
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  exports.default = SvInspectorView;
@@ -1,14 +1,47 @@
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  "use strict";
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+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ var desc = Object.getOwnPropertyDescriptor(m, k);
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+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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+ desc = { enumerable: true, get: function() { return m[k]; } };
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+ }
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+ Object.defineProperty(o, k2, desc);
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+ }) : (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ o[k2] = m[k];
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+ }));
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+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
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+ Object.defineProperty(o, "default", { enumerable: true, value: v });
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+ }) : function(o, v) {
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+ o["default"] = v;
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+ });
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+ var __importStar = (this && this.__importStar) || (function () {
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+ var ownKeys = function(o) {
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+ ownKeys = Object.getOwnPropertyNames || function (o) {
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+ var ar = [];
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+ for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
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+ return ar;
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+ };
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+ return ownKeys(o);
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+ };
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+ return function (mod) {
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+ if (mod && mod.__esModule) return mod;
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+ var result = {};
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+ if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
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+ __setModuleDefault(result, mod);
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+ return result;
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+ };
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+ })();
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  var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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  exports.default = SvInspectorViewF;
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+ const react_1 = require("react");
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  const ViewType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/ViewType"));
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  const util_1 = require("@jbrowse/core/util");
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  const sv_core_1 = require("@jbrowse/sv-core");
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  const mobx_state_tree_1 = require("mobx-state-tree");
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- const SvInspectorView_1 = __importDefault(require("./components/SvInspectorView"));
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  const model_1 = __importDefault(require("./model"));
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  function defaultOnChordClick(feature, chordTrack) {
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  ;
@@ -40,7 +73,7 @@ function SvInspectorViewF(pluginManager) {
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  name: 'SvInspectorView',
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  displayName: 'SV inspector',
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  stateModel,
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- ReactComponent: SvInspectorView_1.default,
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+ ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/SvInspectorView')))),
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  });
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  });
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  }
@@ -79,7 +79,6 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
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  assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  visibleColumns: import("mobx-state-tree").IType<Record<string, boolean>, Record<string, boolean>, Record<string, boolean>>;
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  }, {
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- isLoaded: boolean;
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  visibleRowFlags: Record<number, boolean> | undefined;
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  } & {
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  readonly rows: {
@@ -91,17 +90,20 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
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  readonly dataGridColumns: ({
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  field: string;
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  width: number;
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+ type: "number" | undefined;
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  } | {
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  field: string;
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  width: number;
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  renderCell: ({ row }: import("@mui/x-data-grid").GridRenderCellParams<{
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  id: number;
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  feature: import("@jbrowse/core/util").SimpleFeatureSerialized | undefined;
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- }, any, any, import("@mui/x-data-grid").GridTreeNodeWithRender>) => import("react").JSX.Element | "N/A";
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+ }, any, any, import("@mui/x-data-grid").GridTreeNodeWithRender>) => import("react/jsx-runtime").JSX.Element | "N/A";
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+ type?: undefined;
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  valueGetter?: undefined;
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  valueFormatter?: undefined;
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  } | {
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  field: string;
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+ type: "number";
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  width: number;
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  valueGetter: (_val: unknown, row: {
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  feature?: import("@jbrowse/core/util").SimpleFeatureSerialized;
@@ -117,8 +119,6 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
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  } & {
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  setVisibleRows(arg?: Record<number, boolean>): void;
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  setVisibleColumns(arg: Record<string, boolean>): void;
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- setLoaded(flag: boolean): void;
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- afterAttach(): void;
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  }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
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  rowSet: import("mobx-state-tree").IType<import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined>;
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  columns: import("mobx-state-tree").IType<{
@@ -228,7 +228,6 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
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  assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  visibleColumns: import("mobx-state-tree").IType<Record<string, boolean>, Record<string, boolean>, Record<string, boolean>>;
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  }, {
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- isLoaded: boolean;
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  visibleRowFlags: Record<number, boolean> | undefined;
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  } & {
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  readonly rows: {
@@ -240,17 +239,20 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
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  readonly dataGridColumns: ({
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  field: string;
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  width: number;
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+ type: "number" | undefined;
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  } | {
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  field: string;
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  width: number;
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  renderCell: ({ row }: import("@mui/x-data-grid").GridRenderCellParams<{
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  id: number;
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  feature: import("@jbrowse/core/util").SimpleFeatureSerialized | undefined;
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- }, any, any, import("@mui/x-data-grid").GridTreeNodeWithRender>) => import("react").JSX.Element | "N/A";
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+ }, any, any, import("@mui/x-data-grid").GridTreeNodeWithRender>) => import("react/jsx-runtime").JSX.Element | "N/A";
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+ type?: undefined;
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  valueGetter?: undefined;
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  valueFormatter?: undefined;
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  } | {
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  field: string;
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+ type: "number";
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  width: number;
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  valueGetter: (_val: unknown, row: {
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  feature?: import("@jbrowse/core/util").SimpleFeatureSerialized;
@@ -266,8 +268,6 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
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  } & {
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  setVisibleRows(arg?: Record<number, boolean>): void;
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  setVisibleColumns(arg: Record<string, boolean>): void;
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- setLoaded(flag: boolean): void;
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- afterAttach(): void;
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  }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
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  rowSet: import("mobx-state-tree").IType<import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined>;
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  columns: import("mobx-state-tree").IType<{
@@ -690,7 +690,6 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
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  assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  visibleColumns: import("mobx-state-tree").IType<Record<string, boolean>, Record<string, boolean>, Record<string, boolean>>;
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  }, {
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- isLoaded: boolean;
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  visibleRowFlags: Record<number, boolean> | undefined;
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  } & {
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  readonly rows: {
@@ -702,17 +701,20 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
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  readonly dataGridColumns: ({
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  field: string;
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  width: number;
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+ type: "number" | undefined;
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  } | {
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  field: string;
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  width: number;
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  renderCell: ({ row }: import("@mui/x-data-grid").GridRenderCellParams<{
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  id: number;
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  feature: import("@jbrowse/core/util").SimpleFeatureSerialized | undefined;
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- }, any, any, import("@mui/x-data-grid").GridTreeNodeWithRender>) => import("react").JSX.Element | "N/A";
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+ }, any, any, import("@mui/x-data-grid").GridTreeNodeWithRender>) => import("react/jsx-runtime").JSX.Element | "N/A";
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+ type?: undefined;
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  valueGetter?: undefined;
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  valueFormatter?: undefined;
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  } | {
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  field: string;
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+ type: "number";
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  width: number;
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  valueGetter: (_val: unknown, row: {
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  feature?: import("@jbrowse/core/util").SimpleFeatureSerialized;
@@ -728,8 +730,6 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
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  } & {
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  setVisibleRows(arg?: Record<number, boolean>): void;
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  setVisibleColumns(arg: Record<string, boolean>): void;
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- setLoaded(flag: boolean): void;
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- afterAttach(): void;
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  }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
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  rowSet: import("mobx-state-tree").IType<import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined>;
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  columns: import("mobx-state-tree").IType<{
@@ -50,7 +50,8 @@ function SvInspectorViewF(pluginManager) {
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  : undefined;
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  },
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  get showCircularView() {
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- return !!self.spreadsheetView.spreadsheet;
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+ var _a;
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+ return !!((_a = self.spreadsheetView.spreadsheet) === null || _a === void 0 ? void 0 : _a.rowSet);
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  },
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  get features() {
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  var _a, _b;
@@ -153,13 +154,15 @@ function SvInspectorViewF(pluginManager) {
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  (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(() => {
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  self.spreadsheetView.setHeight(self.height - headerHeight);
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  self.circularView.setHeight(self.height - headerHeight - circularViewOptionsBarHeight);
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- }, { name: 'SvInspectorView height binding' }));
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+ }, {
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+ name: 'SvInspectorView height binding',
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+ }));
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  (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(async () => {
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  const { onlyDisplayRelevantRegionsInCircularView, circularView, canonicalFeatureRefNameSet, currentAssembly, } = self;
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  if (!circularView.initialized || !(currentAssembly === null || currentAssembly === void 0 ? void 0 : currentAssembly.regions)) {
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  return;
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  }
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- if (onlyDisplayRelevantRegionsInCircularView) {
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+ else if (onlyDisplayRelevantRegionsInCircularView) {
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  if (circularView.tracks.length === 1) {
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  try {
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  circularView.setDisplayedRegions(structuredClone(currentAssembly.regions.filter(r => canonicalFeatureRefNameSet.has(r.refName))));
@@ -1,6 +1,5 @@
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- import React from 'react';
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  import type { SvInspectorViewModel } from '../model';
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  declare const CircularViewOptions: ({ svInspector, }: {
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  svInspector: SvInspectorViewModel;
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- }) => React.JSX.Element;
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+ }) => import("react/jsx-runtime").JSX.Element;
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  export default CircularViewOptions;
@@ -1,4 +1,4 @@
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- import React from 'react';
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+ import { jsx as _jsx } from "react/jsx-runtime";
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  import { Checkbox, FormControlLabel, Grid } from '@mui/material';
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  import { observer } from 'mobx-react';
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  import { makeStyles } from 'tss-react/mui';
@@ -9,10 +9,8 @@ const useStyles = makeStyles()(theme => ({
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  }));
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  const CircularViewOptions = observer(function ({ svInspector, }) {
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  const { classes } = useStyles();
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- return (React.createElement(Grid, { container: true, className: classes.circularViewOptions, style: { height: svInspector.circularViewOptionsBarHeight } },
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- React.createElement(Grid, { item: true },
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- React.createElement(FormControlLabel, { control: React.createElement(Checkbox, { checked: svInspector.onlyDisplayRelevantRegionsInCircularView, onChange: e => {
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+ return (_jsx(Grid, { container: true, className: classes.circularViewOptions, style: { height: svInspector.circularViewOptionsBarHeight }, children: _jsx(Grid, { item: true, children: _jsx(FormControlLabel, { control: _jsx(Checkbox, { checked: svInspector.onlyDisplayRelevantRegionsInCircularView, onChange: e => {
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  svInspector.setOnlyDisplayRelevantRegionsInCircularView(e.target.checked);
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- } }), label: "show only regions with data" }))));
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+ } }), label: "show only regions with data" }) }) }));
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  });
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  export default CircularViewOptions;
@@ -1,6 +1,5 @@
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- import React from 'react';
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  import type { SvInspectorViewModel } from '../model';
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  declare const SvInspectorView: ({ model, }: {
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  model: SvInspectorViewModel;
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- }) => React.JSX.Element;
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+ }) => import("react/jsx-runtime").JSX.Element;
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  export default SvInspectorView;
@@ -1,4 +1,4 @@
1
- import React from 'react';
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+ import { jsx as _jsx, jsxs as _jsxs, Fragment as _Fragment } from "react/jsx-runtime";
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  import { ResizeHandle } from '@jbrowse/core/ui';
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  import { observer } from 'mobx-react';
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  import { makeStyles } from 'tss-react/mui';
@@ -29,18 +29,11 @@ const useStyles = makeStyles()(theme => ({
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  const SvInspectorView = observer(function ({ model, }) {
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  const { classes } = useStyles();
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  const { SpreadsheetViewReactComponent, CircularViewReactComponent, showCircularView, } = model;
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- return (React.createElement("div", { className: classes.container },
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- React.createElement("div", { className: classes.viewsContainer },
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- React.createElement("div", { style: { width: model.spreadsheetView.width }, className: classes.container },
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- React.createElement(SpreadsheetViewReactComponent, { model: model.spreadsheetView })),
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- showCircularView ? (React.createElement(React.Fragment, null,
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- React.createElement(ResizeHandle, { onDrag: distance => {
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- const ret1 = model.circularView.resizeWidth(-distance);
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- return model.spreadsheetView.resizeWidth(-ret1);
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- }, vertical: true, flexbox: true, className: classes.resizeHandleVert }),
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- React.createElement("div", { style: { width: model.circularView.width } },
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- React.createElement(CircularViewOptions, { svInspector: model }),
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- React.createElement(CircularViewReactComponent, { model: model.circularView })))) : null),
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- React.createElement(ResizeHandle, { onDrag: model.resizeHeight, className: classes.resizeHandleHoriz })));
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+ return (_jsxs("div", { className: classes.container, children: [_jsxs("div", { className: classes.viewsContainer, children: [_jsx("div", { style: {
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+ width: model.spreadsheetView.width,
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+ }, className: classes.container, children: _jsx(SpreadsheetViewReactComponent, { model: model.spreadsheetView }) }), showCircularView ? (_jsxs(_Fragment, { children: [_jsx(ResizeHandle, { onDrag: distance => {
35
+ const ret1 = model.circularView.resizeWidth(-distance);
36
+ return model.spreadsheetView.resizeWidth(-ret1);
37
+ }, vertical: true, flexbox: true, className: classes.resizeHandleVert }), _jsxs("div", { style: { width: model.circularView.width }, children: [_jsx(CircularViewOptions, { svInspector: model }), _jsx(CircularViewReactComponent, { model: model.circularView })] })] })) : null] }), _jsx(ResizeHandle, { onDrag: model.resizeHeight, className: classes.resizeHandleHoriz })] }));
45
38
  });
46
39
  export default SvInspectorView;
@@ -1,8 +1,8 @@
1
+ import { lazy } from 'react';
1
2
  import ViewType from '@jbrowse/core/pluggableElementTypes/ViewType';
2
3
  import { getContainingView, getSession } from '@jbrowse/core/util';
3
4
  import { navToMultiLevelBreak } from '@jbrowse/sv-core';
4
5
  import { getParent } from 'mobx-state-tree';
5
- import ReactComponent from './components/SvInspectorView';
6
6
  import stateModelFactory from './model';
7
7
  function defaultOnChordClick(feature, chordTrack) {
8
8
  ;
@@ -34,7 +34,7 @@ export default function SvInspectorViewF(pluginManager) {
34
34
  name: 'SvInspectorView',
35
35
  displayName: 'SV inspector',
36
36
  stateModel,
37
- ReactComponent,
37
+ ReactComponent: lazy(() => import('./components/SvInspectorView')),
38
38
  });
39
39
  });
40
40
  }
@@ -79,7 +79,6 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
79
79
  assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
80
80
  visibleColumns: import("mobx-state-tree").IType<Record<string, boolean>, Record<string, boolean>, Record<string, boolean>>;
81
81
  }, {
82
- isLoaded: boolean;
83
82
  visibleRowFlags: Record<number, boolean> | undefined;
84
83
  } & {
85
84
  readonly rows: {
@@ -91,17 +90,20 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
91
90
  readonly dataGridColumns: ({
92
91
  field: string;
93
92
  width: number;
93
+ type: "number" | undefined;
94
94
  } | {
95
95
  field: string;
96
96
  width: number;
97
97
  renderCell: ({ row }: import("@mui/x-data-grid").GridRenderCellParams<{
98
98
  id: number;
99
99
  feature: import("@jbrowse/core/util").SimpleFeatureSerialized | undefined;
100
- }, any, any, import("@mui/x-data-grid").GridTreeNodeWithRender>) => import("react").JSX.Element | "N/A";
100
+ }, any, any, import("@mui/x-data-grid").GridTreeNodeWithRender>) => import("react/jsx-runtime").JSX.Element | "N/A";
101
+ type?: undefined;
101
102
  valueGetter?: undefined;
102
103
  valueFormatter?: undefined;
103
104
  } | {
104
105
  field: string;
106
+ type: "number";
105
107
  width: number;
106
108
  valueGetter: (_val: unknown, row: {
107
109
  feature?: import("@jbrowse/core/util").SimpleFeatureSerialized;
@@ -117,8 +119,6 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
117
119
  } & {
118
120
  setVisibleRows(arg?: Record<number, boolean>): void;
119
121
  setVisibleColumns(arg: Record<string, boolean>): void;
120
- setLoaded(flag: boolean): void;
121
- afterAttach(): void;
122
122
  }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
123
123
  rowSet: import("mobx-state-tree").IType<import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined>;
124
124
  columns: import("mobx-state-tree").IType<{
@@ -228,7 +228,6 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
228
228
  assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
229
229
  visibleColumns: import("mobx-state-tree").IType<Record<string, boolean>, Record<string, boolean>, Record<string, boolean>>;
230
230
  }, {
231
- isLoaded: boolean;
232
231
  visibleRowFlags: Record<number, boolean> | undefined;
233
232
  } & {
234
233
  readonly rows: {
@@ -240,17 +239,20 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
240
239
  readonly dataGridColumns: ({
241
240
  field: string;
242
241
  width: number;
242
+ type: "number" | undefined;
243
243
  } | {
244
244
  field: string;
245
245
  width: number;
246
246
  renderCell: ({ row }: import("@mui/x-data-grid").GridRenderCellParams<{
247
247
  id: number;
248
248
  feature: import("@jbrowse/core/util").SimpleFeatureSerialized | undefined;
249
- }, any, any, import("@mui/x-data-grid").GridTreeNodeWithRender>) => import("react").JSX.Element | "N/A";
249
+ }, any, any, import("@mui/x-data-grid").GridTreeNodeWithRender>) => import("react/jsx-runtime").JSX.Element | "N/A";
250
+ type?: undefined;
250
251
  valueGetter?: undefined;
251
252
  valueFormatter?: undefined;
252
253
  } | {
253
254
  field: string;
255
+ type: "number";
254
256
  width: number;
255
257
  valueGetter: (_val: unknown, row: {
256
258
  feature?: import("@jbrowse/core/util").SimpleFeatureSerialized;
@@ -266,8 +268,6 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
266
268
  } & {
267
269
  setVisibleRows(arg?: Record<number, boolean>): void;
268
270
  setVisibleColumns(arg: Record<string, boolean>): void;
269
- setLoaded(flag: boolean): void;
270
- afterAttach(): void;
271
271
  }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
272
272
  rowSet: import("mobx-state-tree").IType<import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined>;
273
273
  columns: import("mobx-state-tree").IType<{
@@ -690,7 +690,6 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
690
690
  assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
691
691
  visibleColumns: import("mobx-state-tree").IType<Record<string, boolean>, Record<string, boolean>, Record<string, boolean>>;
692
692
  }, {
693
- isLoaded: boolean;
694
693
  visibleRowFlags: Record<number, boolean> | undefined;
695
694
  } & {
696
695
  readonly rows: {
@@ -702,17 +701,20 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
702
701
  readonly dataGridColumns: ({
703
702
  field: string;
704
703
  width: number;
704
+ type: "number" | undefined;
705
705
  } | {
706
706
  field: string;
707
707
  width: number;
708
708
  renderCell: ({ row }: import("@mui/x-data-grid").GridRenderCellParams<{
709
709
  id: number;
710
710
  feature: import("@jbrowse/core/util").SimpleFeatureSerialized | undefined;
711
- }, any, any, import("@mui/x-data-grid").GridTreeNodeWithRender>) => import("react").JSX.Element | "N/A";
711
+ }, any, any, import("@mui/x-data-grid").GridTreeNodeWithRender>) => import("react/jsx-runtime").JSX.Element | "N/A";
712
+ type?: undefined;
712
713
  valueGetter?: undefined;
713
714
  valueFormatter?: undefined;
714
715
  } | {
715
716
  field: string;
717
+ type: "number";
716
718
  width: number;
717
719
  valueGetter: (_val: unknown, row: {
718
720
  feature?: import("@jbrowse/core/util").SimpleFeatureSerialized;
@@ -728,8 +730,6 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
728
730
  } & {
729
731
  setVisibleRows(arg?: Record<number, boolean>): void;
730
732
  setVisibleColumns(arg: Record<string, boolean>): void;
731
- setLoaded(flag: boolean): void;
732
- afterAttach(): void;
733
733
  }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
734
734
  rowSet: import("mobx-state-tree").IType<import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined>;
735
735
  columns: import("mobx-state-tree").IType<{
@@ -45,7 +45,8 @@ function SvInspectorViewF(pluginManager) {
45
45
  : undefined;
46
46
  },
47
47
  get showCircularView() {
48
- return !!self.spreadsheetView.spreadsheet;
48
+ var _a;
49
+ return !!((_a = self.spreadsheetView.spreadsheet) === null || _a === void 0 ? void 0 : _a.rowSet);
49
50
  },
50
51
  get features() {
51
52
  var _a, _b;
@@ -148,13 +149,15 @@ function SvInspectorViewF(pluginManager) {
148
149
  addDisposer(self, autorun(() => {
149
150
  self.spreadsheetView.setHeight(self.height - headerHeight);
150
151
  self.circularView.setHeight(self.height - headerHeight - circularViewOptionsBarHeight);
151
- }, { name: 'SvInspectorView height binding' }));
152
+ }, {
153
+ name: 'SvInspectorView height binding',
154
+ }));
152
155
  addDisposer(self, autorun(async () => {
153
156
  const { onlyDisplayRelevantRegionsInCircularView, circularView, canonicalFeatureRefNameSet, currentAssembly, } = self;
154
157
  if (!circularView.initialized || !(currentAssembly === null || currentAssembly === void 0 ? void 0 : currentAssembly.regions)) {
155
158
  return;
156
159
  }
157
- if (onlyDisplayRelevantRegionsInCircularView) {
160
+ else if (onlyDisplayRelevantRegionsInCircularView) {
158
161
  if (circularView.tracks.length === 1) {
159
162
  try {
160
163
  circularView.setDisplayedRegions(structuredClone(currentAssembly.regions.filter(r => canonicalFeatureRefNameSet.has(r.refName))));
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-sv-inspector",
3
- "version": "2.18.0",
3
+ "version": "3.0.0",
4
4
  "description": "JBrowse 2 SV inspector view",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -36,7 +36,7 @@
36
36
  "clean": "rimraf dist esm *.tsbuildinfo"
37
37
  },
38
38
  "dependencies": {
39
- "@jbrowse/sv-core": "^2.18.0",
39
+ "@jbrowse/sv-core": "^3.0.0",
40
40
  "@mui/icons-material": "^6.0.0"
41
41
  },
42
42
  "peerDependencies": {
@@ -57,5 +57,5 @@
57
57
  "publishConfig": {
58
58
  "access": "public"
59
59
  },
60
- "gitHead": "c344ea60099cb7e460b77f15808946b24a7eee74"
60
+ "gitHead": "2c6897f1fa732b1db5b094d1dca197e333e95319"
61
61
  }