@jbrowse/plugin-sv-inspector 2.17.0 → 2.18.0

package/dist/LaunchSvInspectorView/index.d.ts

@@ -1,2 +1,2 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default function LaunchSvInspectorViewF(pluginManager: PluginManager): void;

package/dist/LaunchSvInspectorView/index.js

@@ -2,9 +2,7 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.default = LaunchSvInspectorViewF;
 function LaunchSvInspectorViewF(pluginManager) {
-    pluginManager.addToExtensionPoint('LaunchView-SvInspectorView', 
-    // @ts-expect-error
-    async ({ session, assembly, uri, fileType, }) => {
+    pluginManager.addToExtensionPoint('LaunchView-SvInspectorView', async ({ session, assembly, uri, fileType, }) => {
         var _a, _b;
         const view = session.addView('SvInspectorView');
         const exts = uri.split('.');

package/dist/SvInspectorView/components/CircularViewOptions.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { SvInspectorViewModel } from '../models/SvInspectorView';
+import type { SvInspectorViewModel } from '../model';
 declare const CircularViewOptions: ({ svInspector, }: {
     svInspector: SvInspectorViewModel;
 }) => React.JSX.Element;

package/dist/SvInspectorView/components/CircularViewOptions.js

@@ -4,8 +4,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importDefault(require("react"));
-const mobx_react_1 = require("mobx-react");
 const material_1 = require("@mui/material");
+const mobx_react_1 = require("mobx-react");
 const mui_1 = require("tss-react/mui");
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
     circularViewOptions: {

package/dist/SvInspectorView/components/SvInspectorView.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { SvInspectorViewModel } from '../models/SvInspectorView';
+import type { SvInspectorViewModel } from '../model';
 declare const SvInspectorView: ({ model, }: {
     model: SvInspectorViewModel;
 }) => React.JSX.Element;

package/dist/SvInspectorView/components/SvInspectorView.js

@@ -4,9 +4,9 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importDefault(require("react"));
+const ui_1 = require("@jbrowse/core/ui");
 const mobx_react_1 = require("mobx-react");
 const mui_1 = require("tss-react/mui");
-const ui_1 = require("@jbrowse/core/ui");
 const CircularViewOptions_1 = __importDefault(require("./CircularViewOptions"));
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
     resizeHandleVert: {

package/dist/SvInspectorView/index.d.ts

@@ -1,2 +1,2 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default function SvInspectorViewF(pluginManager: PluginManager): void;

package/dist/SvInspectorView/index.js

@@ -5,24 +5,37 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.default = SvInspectorViewF;
 const ViewType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/ViewType"));
-const SvInspectorView_1 = __importDefault(require("./components/SvInspectorView"));
-const SvInspectorView_2 = __importDefault(require("./models/SvInspectorView"));
 const util_1 = require("@jbrowse/core/util");
-function defaultOnChordClick(feature, chordTrack, pluginManager) {
-    const session = (0, util_1.getSession)(chordTrack);
-    session.setSelection(feature);
-    const view = (0, util_1.getContainingView)(chordTrack);
-    const viewType = pluginManager.getViewType('BreakpointSplitView');
-    const viewSnapshot = viewType.snapshotFromBreakendFeature(feature, view);
-    // try to center the offsetPx
-    viewSnapshot.views[0].offsetPx -= view.width / 2 + 100;
-    viewSnapshot.views[1].offsetPx -= view.width / 2 + 100;
-    session.addView('BreakpointSplitView', viewSnapshot);
+const sv_core_1 = require("@jbrowse/sv-core");
+const mobx_state_tree_1 = require("mobx-state-tree");
+const SvInspectorView_1 = __importDefault(require("./components/SvInspectorView"));
+const model_1 = __importDefault(require("./model"));
+function defaultOnChordClick(feature, chordTrack) {
+    ;
+    (async () => {
+        const session = (0, util_1.getSession)(chordTrack);
+        try {
+            session.setSelection(feature);
+            const view = (0, util_1.getContainingView)(chordTrack);
+            const parentView = (0, mobx_state_tree_1.getParent)(view);
+            const stableViewId = `${parentView.id}_spawned`;
+            await (0, sv_core_1.navToMultiLevelBreak)({
+                assemblyName: view.assemblyNames[0],
+                session,
+                stableViewId,
+                feature,
+            });
+        }
+        catch (e) {
+            console.error(e);
+            session.notifyError(`${e}`, e);
+        }
+    })();
 }
 function SvInspectorViewF(pluginManager) {
     pluginManager.jexl.addFunction('defaultOnChordClick', defaultOnChordClick);
     pluginManager.addViewType(() => {
-        const stateModel = (0, SvInspectorView_2.default)(pluginManager);
+        const stateModel = (0, model_1.default)(pluginManager);
         return new ViewType_1.default({
             name: 'SvInspectorView',
             displayName: 'SV inspector',