@jbrowse/plugin-sv-inspector 2.12.0 → 2.12.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/LaunchSvInspectorView/index.js +1 -1
- package/dist/SvInspectorView/index.js +1 -1
- package/dist/SvInspectorView/models/SvInspectorView.d.ts +142 -33
- package/dist/SvInspectorView/models/adhocFeatureUtils.js +4 -5
- package/dist/SvInspectorView/models/breakpointSplitViewFromTableRow.js +4 -5
- package/esm/SvInspectorView/models/SvInspectorView.d.ts +142 -33
- package/package.json +2 -2
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@@ -1,5 +1,6 @@
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"use strict";
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.default = LaunchSvInspectorViewF;
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function LaunchSvInspectorViewF(pluginManager) {
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pluginManager.addToExtensionPoint('LaunchView-SvInspectorView',
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// @ts-expect-error
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@@ -24,4 +25,3 @@ function LaunchSvInspectorViewF(pluginManager) {
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await view.spreadsheetView.importWizard.import(assembly);
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});
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}
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exports.default = LaunchSvInspectorViewF;
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@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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return (mod && mod.__esModule) ? mod : { "default": mod };
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};
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.default = SvInspectorViewF;
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const ViewType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/ViewType"));
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const SvInspectorView_1 = __importDefault(require("./components/SvInspectorView"));
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const SvInspectorView_2 = __importDefault(require("./models/SvInspectorView"));
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@@ -31,4 +32,3 @@ function SvInspectorViewF(pluginManager) {
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});
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});
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}
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-
exports.default = SvInspectorViewF;
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@@ -1,4 +1,3 @@
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/// <reference types="react" />
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import { Instance } from 'mobx-state-tree';
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import PluginManager from '@jbrowse/core/PluginManager';
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import { Region } from '@jbrowse/core/util';
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@@ -66,15 +65,13 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
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fileTypes: string[];
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fileSource: any;
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error: unknown;
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loading: boolean;
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* #property
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*/
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loading: boolean;
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} & {
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readonly isReadyToOpen: any;
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readonly canCancel: any;
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readonly fileName: any;
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readonly requiresUnzip: any;
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-
isValidRefName(refName: string, assemblyName?: string
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isValidRefName(refName: string, assemblyName?: string): boolean;
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} & {
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setSelectedAssemblyName(s: string): void;
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setFileSource(newSource: unknown): void;
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@@ -365,10 +362,17 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
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anchorEl: Element;
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rowNumber: string;
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} | null): void;
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-
setSortColumns(newSort:
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setSortColumns(newSort: NonNullable<import("mobx-state-tree").SnapshotIn<import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
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columnNumber: import("mobx-state-tree").ISimpleType<number>;
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descending: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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-
}
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}, {
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switchDirection(): void;
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370
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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columnNumber: import("mobx-state-tree").ISimpleType<number>;
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descending: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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}, {
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switchDirection(): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>>>): void;
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setColumnType(columnNumber: number, newTypeName: string): void;
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unselectAll(): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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@@ -423,7 +427,13 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
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readonly assembly: ({
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[x: string]: any;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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-
setSubschema(slotName: string, data: unknown):
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setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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[x: string]: any;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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[x: string]: any;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | undefined;
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} & {
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setRowMenuItems(newItems: import("@jbrowse/core/ui").MenuItem[]): void;
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@@ -431,7 +441,7 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
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setHeight(newHeight: number): number;
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resizeHeight(distance: number): number;
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resizeWidth(distance: number): number;
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displaySpreadsheet(spreadsheet: import("mobx-state-tree").
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displaySpreadsheet(spreadsheet: import("mobx-state-tree").SnapshotIn<import("mobx-state-tree").IModelType<{
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rowSet: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
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isLoaded: import("mobx-state-tree").ISimpleType<true>;
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rows: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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@@ -611,7 +621,119 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
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switchDirection(): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}
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}, {
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defaultDataType: import("mobx-state-tree").IModelType<{
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type: import("mobx-state-tree").ISimpleType<string>;
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}, {
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DataCellReactComponent: import("react").FC<any> | null;
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FilterModelType: any;
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displayName: string;
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categoryName: string | undefined;
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} & {
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compare: any;
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readonly hasFilter: boolean;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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rowMenuPosition: {
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anchorEl: Element;
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rowNumber: string;
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} | null;
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isLoaded: boolean;
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} & {
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readonly initialized: boolean | undefined;
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readonly hideRowSelection: any;
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readonly dataTypeChoices: {
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typeName: "LocString" | "Text" | "LocRef" | "Number" | "LocStart" | "LocEnd";
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displayName: string;
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categoryName: string | undefined;
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}[];
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rowSortingComparisonFunction(rowA: {
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id: string;
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cells: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
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text: import("mobx-state-tree").ISimpleType<string>;
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extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
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}, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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text: import("mobx-state-tree").ISimpleType<string>;
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extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
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}, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
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extendedData: any;
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isSelected: boolean;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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toggleSelect(): void;
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unSelect(): void;
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select(): void;
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setExtendedData(data: unknown): void;
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} & {
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readonly cellsWithDerived: any;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").ISimpleType<string>;
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cells: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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text: import("mobx-state-tree").ISimpleType<string>;
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extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
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}, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
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isSelected: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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}, {
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toggleSelect(): void;
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unSelect(): void;
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select(): void;
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setExtendedData(data: unknown): void;
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} & {
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readonly cellsWithDerived: any;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>, rowB: {
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id: string;
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cells: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
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text: import("mobx-state-tree").ISimpleType<string>;
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extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
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}, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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text: import("mobx-state-tree").ISimpleType<string>;
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extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
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}, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
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extendedData: any;
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isSelected: boolean;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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toggleSelect(): void;
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unSelect(): void;
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select(): void;
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setExtendedData(data: unknown): void;
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} & {
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readonly cellsWithDerived: any;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").ISimpleType<string>;
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cells: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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text: import("mobx-state-tree").ISimpleType<string>;
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extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
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}, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
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isSelected: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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}, {
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toggleSelect(): void;
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unSelect(): void;
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select(): void;
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setExtendedData(data: unknown): void;
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} & {
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readonly cellsWithDerived: any;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): any;
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} & {
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afterAttach(): void;
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setLoaded(flag: boolean): void;
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setRowMenuPosition(newPosition: {
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anchorEl: Element;
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rowNumber: string;
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} | null): void;
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setSortColumns(newSort: NonNullable<import("mobx-state-tree").SnapshotIn<import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
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columnNumber: import("mobx-state-tree").ISimpleType<number>;
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descending: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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}, {
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switchDirection(): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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columnNumber: import("mobx-state-tree").ISimpleType<number>;
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descending: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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}, {
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switchDirection(): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>>>): void;
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setColumnType(columnNumber: number, newTypeName: string): void;
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unselectAll(): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
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setImportMode(): void;
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setDisplayMode(): void;
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closeView(): void;
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setBpPerPx(newVal: number): void;
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setModelViewWhenAdjust(secondCondition: boolean): void;
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closeView(): void;
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setDisplayedRegions(regions: import("mobx-state-tree").SnapshotOrInstance<import("
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refName: import("mobx-state-tree").ISimpleType<string>;
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start: import("mobx-state-tree").ISimpleType<number>;
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end: import("mobx-state-tree").ISimpleType<number>;
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reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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} & {
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assemblyName: import("mobx-state-tree").ISimpleType<string>;
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}, {
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setRefName(newRefName: string): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>[]): void;
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setDisplayedRegions(regions: import("mobx-state-tree").SnapshotOrInstance<typeof import("@jbrowse/core/util/types/mst").Region>[]): void;
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activateTrackSelector(): import("@jbrowse/core/util").Widget;
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toggleTrack(trackId: string): boolean;
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setError(error: unknown): void;
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showTrack(trackId: string, initialSnapshot?: {}): void;
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addTrackConf(configuration: {
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[x: string]: any;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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setSubschema(slotName: string, data: unknown): any;
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} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>, initialSnapshot?: {}): void;
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addTrackConf(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel, initialSnapshot?: {}): void;
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hideTrack(trackId: string): number;
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toggleFitToWindowLock(): boolean;
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exportSvg(opts?: import("@jbrowse/plugin-circular-view/src/CircularView/models/model").ExportSvgOptions): Promise<void>;
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@@ -797,29 +906,29 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
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} & {
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SpreadsheetViewReactComponent: import("react").LazyExoticComponent<import("react").ComponentClass<{
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model: any;
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session?: import("mobx-state-tree").IAnyStateTreeNode
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+
session?: import("mobx-state-tree").IAnyStateTreeNode;
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}, any> | import("react").FunctionComponent<{
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model: any;
|
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803
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-
session?: import("mobx-state-tree").IAnyStateTreeNode
|
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session?: import("mobx-state-tree").IAnyStateTreeNode;
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}>> | (import("react").ComponentClass<{
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|
model: any;
|
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806
|
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session?: import("mobx-state-tree").IAnyStateTreeNode
|
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session?: import("mobx-state-tree").IAnyStateTreeNode;
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}, any> | import("react").FunctionComponent<{
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model: any;
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809
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session?: import("mobx-state-tree").IAnyStateTreeNode
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session?: import("mobx-state-tree").IAnyStateTreeNode;
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}>);
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|
CircularViewReactComponent: import("react").LazyExoticComponent<import("react").ComponentClass<{
|
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921
|
model: any;
|
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813
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session?: import("mobx-state-tree").IAnyStateTreeNode
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session?: import("mobx-state-tree").IAnyStateTreeNode;
|
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}, any> | import("react").FunctionComponent<{
|
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model: any;
|
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816
|
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session?: import("mobx-state-tree").IAnyStateTreeNode
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session?: import("mobx-state-tree").IAnyStateTreeNode;
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817
926
|
}>> | (import("react").ComponentClass<{
|
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818
927
|
model: any;
|
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819
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-
session?: import("mobx-state-tree").IAnyStateTreeNode
|
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928
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+
session?: import("mobx-state-tree").IAnyStateTreeNode;
|
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820
929
|
}, any> | import("react").FunctionComponent<{
|
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821
930
|
model: any;
|
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822
|
-
session?: import("mobx-state-tree").IAnyStateTreeNode
|
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931
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+
session?: import("mobx-state-tree").IAnyStateTreeNode;
|
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823
932
|
}>);
|
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824
933
|
circularViewOptionsBarHeight: number;
|
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825
934
|
} & {
|
|
@@ -1,6 +1,9 @@
|
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1
1
|
"use strict";
|
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2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
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3
|
-
exports.
|
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3
|
+
exports.makeAdHocFeature = makeAdHocFeature;
|
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4
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+
exports.makeAdHocSvFeatureFromTwoLocations = makeAdHocSvFeatureFromTwoLocations;
|
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5
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+
exports.makeAdHocSvFeatureFromTwoRefStartEndSets = makeAdHocSvFeatureFromTwoRefStartEndSets;
|
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6
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+
exports.makeAdHocSvFeature = makeAdHocSvFeature;
|
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4
7
|
// this file contains the rather verbose functions for
|
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5
8
|
// creating features from CSV/TSV lines
|
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6
9
|
const util_1 = require("@jbrowse/core/util");
|
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@@ -31,7 +34,6 @@ function makeAdHocFeature(columns, columnsAlreadyUsedInLocations, row, loc1, loc
|
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34
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},
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35
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};
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}
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-
exports.makeAdHocFeature = makeAdHocFeature;
|
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37
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function makeAdHocSvFeatureFromTwoLocations(columns, locationColumnNumbers, row, rowNumber, isValidRefName) {
|
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38
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// use the first two locations we found (first according to *displayed* order)
|
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39
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const loc1 = (0, util_1.parseLocString)(row.cells[locationColumnNumbers[0]].text, isValidRefName);
|
|
@@ -42,7 +44,6 @@ function makeAdHocSvFeatureFromTwoLocations(columns, locationColumnNumbers, row,
|
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42
44
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];
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45
|
return makeAdHocFeature(columns, columnsAlreadyUsedInLocations, row, loc1, loc2, rowNumber);
|
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46
|
}
|
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45
|
-
exports.makeAdHocSvFeatureFromTwoLocations = makeAdHocSvFeatureFromTwoLocations;
|
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46
47
|
function makeAdHocSvFeatureFromTwoRefStartEndSets(columns, locRefColumnNumbers, locStartColumnNumbers, locEndColumnNumbers, row, rowNumber) {
|
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47
48
|
const textOf = colno => row.cells[colno].text;
|
|
48
49
|
const loc1 = {
|
|
@@ -65,7 +66,6 @@ function makeAdHocSvFeatureFromTwoRefStartEndSets(columns, locRefColumnNumbers,
|
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65
66
|
];
|
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66
67
|
return makeAdHocFeature(columns, columnsAlreadyUsedInLocations, row, loc1, loc2, rowNumber);
|
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68
|
}
|
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68
|
-
exports.makeAdHocSvFeatureFromTwoRefStartEndSets = makeAdHocSvFeatureFromTwoRefStartEndSets;
|
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// makes a feature data object (passed as `data` to a SimpleFeature constructor)
|
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// out of table row if the row has 2 location columns. undefined if not
|
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71
71
|
function makeAdHocSvFeature(sheet, rowNumber, row, isValidRefName) {
|
|
@@ -93,4 +93,3 @@ function makeAdHocSvFeature(sheet, rowNumber, row, isValidRefName) {
|
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93
93
|
}
|
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94
94
|
return undefined;
|
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95
95
|
}
|
|
96
|
-
exports.makeAdHocSvFeature = makeAdHocSvFeature;
|
|
@@ -1,6 +1,9 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
exports.
|
|
3
|
+
exports.getFeatureForRow = getFeatureForRow;
|
|
4
|
+
exports.breakpointSplitViewSnapshotFromTableRow = breakpointSplitViewSnapshotFromTableRow;
|
|
5
|
+
exports.openBreakpointSplitViewFromTableRow = openBreakpointSplitViewFromTableRow;
|
|
6
|
+
exports.canOpenBreakpointSplitViewFromTableRow = canOpenBreakpointSplitViewFromTableRow;
|
|
4
7
|
const util_1 = require("@jbrowse/core/util");
|
|
5
8
|
const adhocFeatureUtils_1 = require("./adhocFeatureUtils");
|
|
6
9
|
function getFeatureForRow(session, spreadsheetView, row, rowNumber) {
|
|
@@ -9,7 +12,6 @@ function getFeatureForRow(session, spreadsheetView, row, rowNumber) {
|
|
|
9
12
|
((_b = row.extendedData) === null || _b === void 0 ? void 0 : _b.feature) ||
|
|
10
13
|
(0, adhocFeatureUtils_1.makeAdHocSvFeature)(spreadsheetView.spreadsheet, rowNumber, row, session.assemblyManager.isValidRefName));
|
|
11
14
|
}
|
|
12
|
-
exports.getFeatureForRow = getFeatureForRow;
|
|
13
15
|
function breakpointSplitViewSnapshotFromTableRow(svInspectorView, spreadsheetView, spreadsheet, row, rowNumber) {
|
|
14
16
|
const { pluginManager } = (0, util_1.getEnv)(svInspectorView);
|
|
15
17
|
const session = (0, util_1.getSession)(spreadsheetView);
|
|
@@ -23,7 +25,6 @@ function breakpointSplitViewSnapshotFromTableRow(svInspectorView, spreadsheetVie
|
|
|
23
25
|
}
|
|
24
26
|
return undefined;
|
|
25
27
|
}
|
|
26
|
-
exports.breakpointSplitViewSnapshotFromTableRow = breakpointSplitViewSnapshotFromTableRow;
|
|
27
28
|
function openBreakpointSplitViewFromTableRow(svInspectorView, spreadsheetView, spreadsheet, row, rowNumber) {
|
|
28
29
|
const viewSnapshot = breakpointSplitViewSnapshotFromTableRow(svInspectorView, spreadsheetView, spreadsheet, row, rowNumber);
|
|
29
30
|
if (viewSnapshot) {
|
|
@@ -35,7 +36,6 @@ function openBreakpointSplitViewFromTableRow(svInspectorView, spreadsheetView, s
|
|
|
35
36
|
session.addView('BreakpointSplitView', viewSnapshot);
|
|
36
37
|
}
|
|
37
38
|
}
|
|
38
|
-
exports.openBreakpointSplitViewFromTableRow = openBreakpointSplitViewFromTableRow;
|
|
39
39
|
function canOpenBreakpointSplitViewFromTableRow(svInspectorView, spreadsheetView, spreadsheet, row, rowNumber) {
|
|
40
40
|
try {
|
|
41
41
|
return Boolean(breakpointSplitViewSnapshotFromTableRow(svInspectorView, spreadsheetView, spreadsheet, row, rowNumber));
|
|
@@ -45,4 +45,3 @@ function canOpenBreakpointSplitViewFromTableRow(svInspectorView, spreadsheetView
|
|
|
45
45
|
return false;
|
|
46
46
|
}
|
|
47
47
|
}
|
|
48
|
-
exports.canOpenBreakpointSplitViewFromTableRow = canOpenBreakpointSplitViewFromTableRow;
|
|
@@ -1,4 +1,3 @@
|
|
|
1
|
-
/// <reference types="react" />
|
|
2
1
|
import { Instance } from 'mobx-state-tree';
|
|
3
2
|
import PluginManager from '@jbrowse/core/PluginManager';
|
|
4
3
|
import { Region } from '@jbrowse/core/util';
|
|
@@ -66,15 +65,13 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
|
|
|
66
65
|
fileTypes: string[];
|
|
67
66
|
fileSource: any;
|
|
68
67
|
error: unknown;
|
|
69
|
-
loading: boolean;
|
|
70
|
-
* #property
|
|
71
|
-
*/
|
|
68
|
+
loading: boolean;
|
|
72
69
|
} & {
|
|
73
70
|
readonly isReadyToOpen: any;
|
|
74
71
|
readonly canCancel: any;
|
|
75
72
|
readonly fileName: any;
|
|
76
73
|
readonly requiresUnzip: any;
|
|
77
|
-
isValidRefName(refName: string, assemblyName?: string
|
|
74
|
+
isValidRefName(refName: string, assemblyName?: string): boolean;
|
|
78
75
|
} & {
|
|
79
76
|
setSelectedAssemblyName(s: string): void;
|
|
80
77
|
setFileSource(newSource: unknown): void;
|
|
@@ -365,10 +362,17 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
|
|
|
365
362
|
anchorEl: Element;
|
|
366
363
|
rowNumber: string;
|
|
367
364
|
} | null): void;
|
|
368
|
-
setSortColumns(newSort:
|
|
365
|
+
setSortColumns(newSort: NonNullable<import("mobx-state-tree").SnapshotIn<import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
|
|
369
366
|
columnNumber: import("mobx-state-tree").ISimpleType<number>;
|
|
370
367
|
descending: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
371
|
-
}
|
|
368
|
+
}, {
|
|
369
|
+
switchDirection(): void;
|
|
370
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
|
|
371
|
+
columnNumber: import("mobx-state-tree").ISimpleType<number>;
|
|
372
|
+
descending: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
373
|
+
}, {
|
|
374
|
+
switchDirection(): void;
|
|
375
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>>>): void;
|
|
372
376
|
setColumnType(columnNumber: number, newTypeName: string): void;
|
|
373
377
|
unselectAll(): void;
|
|
374
378
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
@@ -423,7 +427,13 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
|
|
|
423
427
|
readonly assembly: ({
|
|
424
428
|
[x: string]: any;
|
|
425
429
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
426
|
-
setSubschema(slotName: string, data: unknown):
|
|
430
|
+
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
431
|
+
[x: string]: any;
|
|
432
|
+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
433
|
+
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
434
|
+
[x: string]: any;
|
|
435
|
+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
436
|
+
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
427
437
|
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | undefined;
|
|
428
438
|
} & {
|
|
429
439
|
setRowMenuItems(newItems: import("@jbrowse/core/ui").MenuItem[]): void;
|
|
@@ -431,7 +441,7 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
|
|
|
431
441
|
setHeight(newHeight: number): number;
|
|
432
442
|
resizeHeight(distance: number): number;
|
|
433
443
|
resizeWidth(distance: number): number;
|
|
434
|
-
displaySpreadsheet(spreadsheet: import("mobx-state-tree").
|
|
444
|
+
displaySpreadsheet(spreadsheet: import("mobx-state-tree").SnapshotIn<import("mobx-state-tree").IModelType<{
|
|
435
445
|
rowSet: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
|
|
436
446
|
isLoaded: import("mobx-state-tree").ISimpleType<true>;
|
|
437
447
|
rows: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
|
|
@@ -611,7 +621,119 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
|
|
|
611
621
|
switchDirection(): void;
|
|
612
622
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
613
623
|
assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
614
|
-
}
|
|
624
|
+
}, {
|
|
625
|
+
defaultDataType: import("mobx-state-tree").IModelType<{
|
|
626
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
627
|
+
}, {
|
|
628
|
+
DataCellReactComponent: import("react").FC<any> | null;
|
|
629
|
+
FilterModelType: any;
|
|
630
|
+
displayName: string;
|
|
631
|
+
categoryName: string | undefined;
|
|
632
|
+
} & {
|
|
633
|
+
compare: any;
|
|
634
|
+
readonly hasFilter: boolean;
|
|
635
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
636
|
+
rowMenuPosition: {
|
|
637
|
+
anchorEl: Element;
|
|
638
|
+
rowNumber: string;
|
|
639
|
+
} | null;
|
|
640
|
+
isLoaded: boolean;
|
|
641
|
+
} & {
|
|
642
|
+
readonly initialized: boolean | undefined;
|
|
643
|
+
readonly hideRowSelection: any;
|
|
644
|
+
readonly dataTypeChoices: {
|
|
645
|
+
typeName: "LocString" | "Text" | "LocRef" | "Number" | "LocStart" | "LocEnd";
|
|
646
|
+
displayName: string;
|
|
647
|
+
categoryName: string | undefined;
|
|
648
|
+
}[];
|
|
649
|
+
rowSortingComparisonFunction(rowA: {
|
|
650
|
+
id: string;
|
|
651
|
+
cells: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
|
|
652
|
+
text: import("mobx-state-tree").ISimpleType<string>;
|
|
653
|
+
extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
|
|
654
|
+
}, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
|
|
655
|
+
text: import("mobx-state-tree").ISimpleType<string>;
|
|
656
|
+
extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
|
|
657
|
+
}, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
|
|
658
|
+
extendedData: any;
|
|
659
|
+
isSelected: boolean;
|
|
660
|
+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
661
|
+
toggleSelect(): void;
|
|
662
|
+
unSelect(): void;
|
|
663
|
+
select(): void;
|
|
664
|
+
setExtendedData(data: unknown): void;
|
|
665
|
+
} & {
|
|
666
|
+
readonly cellsWithDerived: any;
|
|
667
|
+
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
668
|
+
id: import("mobx-state-tree").ISimpleType<string>;
|
|
669
|
+
cells: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
|
|
670
|
+
text: import("mobx-state-tree").ISimpleType<string>;
|
|
671
|
+
extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
|
|
672
|
+
}, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
673
|
+
extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
|
|
674
|
+
isSelected: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
675
|
+
}, {
|
|
676
|
+
toggleSelect(): void;
|
|
677
|
+
unSelect(): void;
|
|
678
|
+
select(): void;
|
|
679
|
+
setExtendedData(data: unknown): void;
|
|
680
|
+
} & {
|
|
681
|
+
readonly cellsWithDerived: any;
|
|
682
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>, rowB: {
|
|
683
|
+
id: string;
|
|
684
|
+
cells: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
|
|
685
|
+
text: import("mobx-state-tree").ISimpleType<string>;
|
|
686
|
+
extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
|
|
687
|
+
}, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
|
|
688
|
+
text: import("mobx-state-tree").ISimpleType<string>;
|
|
689
|
+
extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
|
|
690
|
+
}, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
|
|
691
|
+
extendedData: any;
|
|
692
|
+
isSelected: boolean;
|
|
693
|
+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
694
|
+
toggleSelect(): void;
|
|
695
|
+
unSelect(): void;
|
|
696
|
+
select(): void;
|
|
697
|
+
setExtendedData(data: unknown): void;
|
|
698
|
+
} & {
|
|
699
|
+
readonly cellsWithDerived: any;
|
|
700
|
+
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
701
|
+
id: import("mobx-state-tree").ISimpleType<string>;
|
|
702
|
+
cells: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
|
|
703
|
+
text: import("mobx-state-tree").ISimpleType<string>;
|
|
704
|
+
extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
|
|
705
|
+
}, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
706
|
+
extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
|
|
707
|
+
isSelected: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
708
|
+
}, {
|
|
709
|
+
toggleSelect(): void;
|
|
710
|
+
unSelect(): void;
|
|
711
|
+
select(): void;
|
|
712
|
+
setExtendedData(data: unknown): void;
|
|
713
|
+
} & {
|
|
714
|
+
readonly cellsWithDerived: any;
|
|
715
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): any;
|
|
716
|
+
} & {
|
|
717
|
+
afterAttach(): void;
|
|
718
|
+
setLoaded(flag: boolean): void;
|
|
719
|
+
setRowMenuPosition(newPosition: {
|
|
720
|
+
anchorEl: Element;
|
|
721
|
+
rowNumber: string;
|
|
722
|
+
} | null): void;
|
|
723
|
+
setSortColumns(newSort: NonNullable<import("mobx-state-tree").SnapshotIn<import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
|
|
724
|
+
columnNumber: import("mobx-state-tree").ISimpleType<number>;
|
|
725
|
+
descending: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
726
|
+
}, {
|
|
727
|
+
switchDirection(): void;
|
|
728
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
|
|
729
|
+
columnNumber: import("mobx-state-tree").ISimpleType<number>;
|
|
730
|
+
descending: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
731
|
+
}, {
|
|
732
|
+
switchDirection(): void;
|
|
733
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>>>): void;
|
|
734
|
+
setColumnType(columnNumber: number, newTypeName: string): void;
|
|
735
|
+
unselectAll(): void;
|
|
736
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
|
|
615
737
|
setImportMode(): void;
|
|
616
738
|
setDisplayMode(): void;
|
|
617
739
|
closeView(): void;
|
|
@@ -710,25 +832,12 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
|
|
|
710
832
|
setBpPerPx(newVal: number): void;
|
|
711
833
|
setModelViewWhenAdjust(secondCondition: boolean): void;
|
|
712
834
|
closeView(): void;
|
|
713
|
-
setDisplayedRegions(regions: import("mobx-state-tree").SnapshotOrInstance<import("
|
|
714
|
-
refName: import("mobx-state-tree").ISimpleType<string>;
|
|
715
|
-
start: import("mobx-state-tree").ISimpleType<number>;
|
|
716
|
-
end: import("mobx-state-tree").ISimpleType<number>;
|
|
717
|
-
reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
718
|
-
} & {
|
|
719
|
-
assemblyName: import("mobx-state-tree").ISimpleType<string>;
|
|
720
|
-
}, {
|
|
721
|
-
setRefName(newRefName: string): void;
|
|
722
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>[]): void;
|
|
835
|
+
setDisplayedRegions(regions: import("mobx-state-tree").SnapshotOrInstance<typeof import("@jbrowse/core/util/types/mst").Region>[]): void;
|
|
723
836
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
724
837
|
toggleTrack(trackId: string): boolean;
|
|
725
838
|
setError(error: unknown): void;
|
|
726
839
|
showTrack(trackId: string, initialSnapshot?: {}): void;
|
|
727
|
-
addTrackConf(configuration: {
|
|
728
|
-
[x: string]: any;
|
|
729
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
730
|
-
setSubschema(slotName: string, data: unknown): any;
|
|
731
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>, initialSnapshot?: {}): void;
|
|
840
|
+
addTrackConf(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel, initialSnapshot?: {}): void;
|
|
732
841
|
hideTrack(trackId: string): number;
|
|
733
842
|
toggleFitToWindowLock(): boolean;
|
|
734
843
|
exportSvg(opts?: import("@jbrowse/plugin-circular-view/src/CircularView/models/model").ExportSvgOptions): Promise<void>;
|
|
@@ -797,29 +906,29 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
|
|
|
797
906
|
} & {
|
|
798
907
|
SpreadsheetViewReactComponent: import("react").LazyExoticComponent<import("react").ComponentClass<{
|
|
799
908
|
model: any;
|
|
800
|
-
session?: import("mobx-state-tree").IAnyStateTreeNode
|
|
909
|
+
session?: import("mobx-state-tree").IAnyStateTreeNode;
|
|
801
910
|
}, any> | import("react").FunctionComponent<{
|
|
802
911
|
model: any;
|
|
803
|
-
session?: import("mobx-state-tree").IAnyStateTreeNode
|
|
912
|
+
session?: import("mobx-state-tree").IAnyStateTreeNode;
|
|
804
913
|
}>> | (import("react").ComponentClass<{
|
|
805
914
|
model: any;
|
|
806
|
-
session?: import("mobx-state-tree").IAnyStateTreeNode
|
|
915
|
+
session?: import("mobx-state-tree").IAnyStateTreeNode;
|
|
807
916
|
}, any> | import("react").FunctionComponent<{
|
|
808
917
|
model: any;
|
|
809
|
-
session?: import("mobx-state-tree").IAnyStateTreeNode
|
|
918
|
+
session?: import("mobx-state-tree").IAnyStateTreeNode;
|
|
810
919
|
}>);
|
|
811
920
|
CircularViewReactComponent: import("react").LazyExoticComponent<import("react").ComponentClass<{
|
|
812
921
|
model: any;
|
|
813
|
-
session?: import("mobx-state-tree").IAnyStateTreeNode
|
|
922
|
+
session?: import("mobx-state-tree").IAnyStateTreeNode;
|
|
814
923
|
}, any> | import("react").FunctionComponent<{
|
|
815
924
|
model: any;
|
|
816
|
-
session?: import("mobx-state-tree").IAnyStateTreeNode
|
|
925
|
+
session?: import("mobx-state-tree").IAnyStateTreeNode;
|
|
817
926
|
}>> | (import("react").ComponentClass<{
|
|
818
927
|
model: any;
|
|
819
|
-
session?: import("mobx-state-tree").IAnyStateTreeNode
|
|
928
|
+
session?: import("mobx-state-tree").IAnyStateTreeNode;
|
|
820
929
|
}, any> | import("react").FunctionComponent<{
|
|
821
930
|
model: any;
|
|
822
|
-
session?: import("mobx-state-tree").IAnyStateTreeNode
|
|
931
|
+
session?: import("mobx-state-tree").IAnyStateTreeNode;
|
|
823
932
|
}>);
|
|
824
933
|
circularViewOptionsBarHeight: number;
|
|
825
934
|
} & {
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@jbrowse/plugin-sv-inspector",
|
|
3
|
-
"version": "2.12.
|
|
3
|
+
"version": "2.12.2",
|
|
4
4
|
"description": "JBrowse 2 SV inspector view",
|
|
5
5
|
"keywords": [
|
|
6
6
|
"jbrowse",
|
|
@@ -57,5 +57,5 @@
|
|
|
57
57
|
"publishConfig": {
|
|
58
58
|
"access": "public"
|
|
59
59
|
},
|
|
60
|
-
"gitHead": "
|
|
60
|
+
"gitHead": "1ec66736ce048a1637f52b7a7ef2eb02d956b771"
|
|
61
61
|
}
|