@jbrowse/plugin-spreadsheet-view 3.7.0 → 4.0.1

package/dist/SpreadsheetView/components/FeatureMenu.js

@@ -1,105 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = FeatureMenu;
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const CascadingMenuButton_1 = __importDefault(require("@jbrowse/core/ui/CascadingMenuButton"));
-const util_1 = require("@jbrowse/core/util");
-const ArrowDropDown_1 = __importDefault(require("@mui/icons-material/ArrowDropDown"));
-const mobx_state_tree_1 = require("mobx-state-tree");
-const util_2 = require("../util");
-const BreakendMultiLevelOptionDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./BreakendMultiLevelOptionDialog'))));
-const BreakendSingleLevelOptionDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./BreakendSingleLevelOptionDialog'))));
-function FeatureMenu({ assemblyName, session, spreadsheetViewId, feature, }) {
-    return ((0, jsx_runtime_1.jsx)(CascadingMenuButton_1.default, { menuItems: [
-            {
-                label: 'Open in linear genome view',
-                onClick: async () => {
-                    try {
-                        await (0, util_2.locationLinkClick)({
-                            spreadsheetViewId,
-                            assemblyName,
-                            session,
-                            locString: (0, util_1.assembleLocStringFast)(feature),
-                        });
-                    }
-                    catch (e) {
-                        console.error(e);
-                        session.notifyError(`${e}`, e);
-                    }
-                },
-            },
-            {
-                label: 'Open in single-level split view',
-                onClick: async () => {
-                    const { pluginManager } = (0, mobx_state_tree_1.getEnv)(session);
-                    const viewType = pluginManager.getViewType('BreakpointSplitView');
-                    session.queueDialog(handleClose => [
-                        BreakendSingleLevelOptionDialog,
-                        {
-                            handleClose,
-                            session,
-                            stableViewId: `${spreadsheetViewId}_${assemblyName}_breakpointsplitview_singlelevel`,
-                            feature: new util_1.SimpleFeature(feature),
-                            viewType,
-                            assemblyName,
-                        },
-                    ]);
-                },
-            },
-            {
-                label: 'Open in multi-level split view',
-                onClick: async () => {
-                    const { pluginManager } = (0, mobx_state_tree_1.getEnv)(session);
-                    const viewType = pluginManager.getViewType('BreakpointSplitView');
-                    session.queueDialog(handleClose => [
-                        BreakendMultiLevelOptionDialog,
-                        {
-                            handleClose,
-                            session,
-                            stableViewId: `${spreadsheetViewId}_${assemblyName}_breakpointsplitview_multilevel`,
-                            feature: new util_1.SimpleFeature(feature),
-                            viewType,
-                            assemblyName,
-                        },
-                    ]);
-                },
-            },
-        ], children: (0, jsx_runtime_1.jsx)(ArrowDropDown_1.default, {}) }));
-}

package/dist/SpreadsheetView/components/ImportWizard.d.ts

@@ -1,5 +0,0 @@
-import type { ImportWizardModel } from '../ImportWizard';
-declare const ImportWizard: ({ model, }: {
-    model: ImportWizardModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default ImportWizard;

package/dist/SpreadsheetView/components/ImportWizard.js

@@ -1,47 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const util_1 = require("@jbrowse/core/util");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const mui_1 = require("tss-react/mui");
-const TrackSelector_1 = __importDefault(require("./TrackSelector"));
-const useStyles = (0, mui_1.makeStyles)()({
-    container: {
-        margin: '0 auto',
-        maxWidth: '40em',
-        padding: 20,
-    },
-});
-const ImportWizard = (0, mobx_react_1.observer)(function ({ model, }) {
-    var _a;
-    const session = (0, util_1.getSession)(model);
-    const { classes } = useStyles();
-    const { assemblyNames, assemblyManager } = session;
-    const { loading, fileType, fileSource, isReadyToOpen, fileTypes, error } = model;
-    const [selectedAssembly, setSelectedAssembly] = (0, react_1.useState)(assemblyNames[0]);
-    const [selectorType, setSelectorType] = (0, react_1.useState)('custom');
-    const err = ((_a = assemblyManager.get(selectedAssembly)) === null || _a === void 0 ? void 0 : _a.error) || error;
-    const rootModel = (0, mobx_state_tree_1.getRoot)(model);
-    return ((0, jsx_runtime_1.jsxs)("div", { children: [err ? (0, jsx_runtime_1.jsx)(ui_1.ErrorMessage, { error: err }) : null, (0, jsx_runtime_1.jsxs)(material_1.Paper, { className: classes.container, children: [loading ? (0, jsx_runtime_1.jsx)(ui_1.LoadingEllipses, { variant: "h6" }) : null, (0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)(material_1.FormControl, { component: "fieldset", children: (0, jsx_runtime_1.jsx)(material_1.RadioGroup, { row: true, "aria-label": "file type", name: "type", value: fileType, onChange: event => {
-                                    setSelectorType(event.target.value);
-                                }, children: Object.entries({
-                                    custom: 'Open file from URL or local computer',
-                                    existing: 'Open from track',
-                                }).map(([key, val]) => ((0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { checked: selectorType === key, value: key, control: (0, jsx_runtime_1.jsx)(material_1.Radio, {}), label: val }, key))) }) }) }), selectorType === 'custom' ? ((0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)(material_1.FormControl, { component: "fieldset", children: (0, jsx_runtime_1.jsx)(material_1.FormGroup, { children: (0, jsx_runtime_1.jsx)(ui_1.FileSelector, { inline: true, location: fileSource, rootModel: rootModel, setLocation: arg => {
-                                        model.setFileSource(arg);
-                                    } }) }) }) })) : selectedAssembly ? ((0, jsx_runtime_1.jsx)(TrackSelector_1.default, { model: model, selectedAssembly: selectedAssembly })) : ((0, jsx_runtime_1.jsx)("div", { children: "Select assembly" })), (0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsxs)(material_1.FormControl, { component: "fieldset", children: [(0, jsx_runtime_1.jsx)(material_1.FormLabel, { component: "legend", children: "File Type" }), (0, jsx_runtime_1.jsx)(material_1.RadioGroup, { row: true, "aria-label": "file type", name: "type", value: fileType, onChange: event => {
-                                        model.setFileType(event.target.value);
-                                    }, children: fileTypes.map(fileTypeName => ((0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { checked: fileType === fileTypeName, value: fileTypeName, control: (0, jsx_runtime_1.jsx)(material_1.Radio, {}), label: fileTypeName }, fileTypeName))) })] }) }), (0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)(ui_1.AssemblySelector, { session: session, selected: selectedAssembly, onChange: val => {
-                                setSelectedAssembly(val);
-                            } }) }), (0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)(material_1.Button, { disabled: !isReadyToOpen || !!err, variant: "contained", "data-testid": "open_spreadsheet", color: "primary", onClick: () => {
-                                model.import(selectedAssembly);
-                            }, children: "Open" }) })] })] }));
-});
-exports.default = ImportWizard;

package/dist/SpreadsheetView/components/LocationCell.d.ts

@@ -1,7 +0,0 @@
-import type { SimpleFeatureSerialized } from '@jbrowse/core/util';
-export default function LocationCell({ model, feature, }: {
-    model: {
-        assemblyName?: string;
-    };
-    feature: SimpleFeatureSerialized;
-}): import("react/jsx-runtime").JSX.Element;

package/dist/SpreadsheetView/components/LocationCell.js

@@ -1,29 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = LocationCell;
-const jsx_runtime_1 = require("react/jsx-runtime");
-const util_1 = require("@jbrowse/core/util");
-const material_1 = require("@mui/material");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const util_2 = require("../util");
-const FeatureMenu_1 = __importDefault(require("./FeatureMenu"));
-function LocationCell({ model, feature, }) {
-    return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(FeatureMenu_1.default, { session: (0, util_1.getSession)(model), spreadsheetViewId: (0, mobx_state_tree_1.getParent)(model).id, assemblyName: model.assemblyName, feature: feature }), (0, jsx_runtime_1.jsx)(material_1.Link, { href: "#", onClick: async (event) => {
-                    try {
-                        event.preventDefault();
-                        await (0, util_2.locationLinkClick)({
-                            spreadsheetViewId: (0, mobx_state_tree_1.getParent)(model).id,
-                            session: (0, util_1.getSession)(model),
-                            locString: (0, util_1.assembleLocString)(feature),
-                            assemblyName: model.assemblyName,
-                        });
-                    }
-                    catch (e) {
-                        console.error(e);
-                        (0, util_1.getSession)(model).notifyError(`${e}`, e);
-                    }
-                }, children: (0, util_1.assembleLocString)(feature) })] }));
-}

package/dist/SpreadsheetView/components/NumberEditor.d.ts

@@ -1,8 +0,0 @@
-import type { ImportWizardModel } from '../ImportWizard';
-declare const NumberEditor: ({ model, disabled, modelPropName, modelSetterName, }: {
-    model: ImportWizardModel;
-    disabled: boolean;
-    modelPropName: string;
-    modelSetterName: string;
-}) => import("react/jsx-runtime").JSX.Element;
-export default NumberEditor;

package/dist/SpreadsheetView/components/NumberEditor.js

@@ -1,32 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const useStyles = (0, mui_1.makeStyles)()({
-    textField: {
-        width: '2rem',
-        verticalAlign: 'baseline',
-    },
-});
-const NumberEditor = (0, mobx_react_1.observer)(function ({ model, disabled, modelPropName, modelSetterName, }) {
-    const [val, setVal] = (0, react_1.useState)(model[modelPropName]);
-    const { classes } = useStyles();
-    (0, react_1.useEffect)(() => {
-        const num = Number.parseInt(val, 10);
-        if (!Number.isNaN(num)) {
-            if (num > 0) {
-                model[modelSetterName](num);
-            }
-            else {
-                setVal(1);
-            }
-        }
-    }, [model, modelSetterName, val]);
-    return ((0, jsx_runtime_1.jsx)(material_1.TextField, { value: val, disabled: disabled, type: "number", onChange: evt => {
-            setVal(evt.target.value);
-        }, className: classes.textField }));
-});
-exports.default = NumberEditor;

package/dist/SpreadsheetView/components/SpreadsheetDataGrid.d.ts

@@ -1,5 +0,0 @@
-import type { SpreadsheetModel } from '../SpreadsheetModel';
-declare const SpreadsheetDataGrid: ({ model, }: {
-    model: SpreadsheetModel;
-}) => import("react/jsx-runtime").JSX.Element | null;
-export default SpreadsheetDataGrid;

package/dist/SpreadsheetView/components/SpreadsheetDataGrid.js

@@ -1,23 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const x_data_grid_1 = require("@mui/x-data-grid");
-const mobx_react_1 = require("mobx-react");
-const SpreadsheetDataGrid = (0, mobx_react_1.observer)(function ({ model, }) {
-    const { rows, dataGridColumns, visibleColumns } = model;
-    const apiRef = (0, x_data_grid_1.useGridApiRef)();
-    return rows && dataGridColumns ? ((0, jsx_runtime_1.jsx)(x_data_grid_1.DataGrid, { "data-testid": "spreadsheet-view-data-grid", apiRef: apiRef, checkboxSelection: true, disableRowSelectionOnClick: true, columnHeaderHeight: 35, columnVisibilityModel: visibleColumns, onFilterModelChange: () => {
-            setTimeout(() => {
-                if (apiRef.current) {
-                    model.setVisibleRows(apiRef.current.state.visibleRowsLookup);
-                }
-            });
-        }, onColumnVisibilityModelChange: n => {
-            model.setVisibleColumns(n);
-        }, rowHeight: 25, hideFooter: rows.length < 100, slotProps: {
-            toolbar: {
-                showQuickFilter: true,
-            },
-        }, showToolbar: true, rows: rows, columns: dataGridColumns })) : null;
-});
-exports.default = SpreadsheetDataGrid;

package/dist/SpreadsheetView/components/SpreadsheetView.d.ts

@@ -1,5 +0,0 @@
-import type { SpreadsheetViewModel } from '../SpreadsheetViewModel';
-declare const SpreadsheetContainer: ({ model, }: {
-    model: SpreadsheetViewModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default SpreadsheetContainer;

package/dist/SpreadsheetView/components/SpreadsheetView.js

@@ -1,48 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const mobx_react_1 = require("mobx-react");
-const SpreadsheetViewActual_1 = __importDefault(require("./SpreadsheetViewActual"));
-const ImportWizard = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./ImportWizard'))));
-const SpreadsheetContainer = (0, mobx_react_1.observer)(function ({ model, }) {
-    var _a;
-    return !((_a = model.spreadsheet) === null || _a === void 0 ? void 0 : _a.initialized) ? ((0, jsx_runtime_1.jsx)(react_1.Suspense, { fallback: null, children: (0, jsx_runtime_1.jsx)(ImportWizard, { model: model.importWizard }) })) : ((0, jsx_runtime_1.jsx)(SpreadsheetViewActual_1.default, { model: model }));
-});
-exports.default = SpreadsheetContainer;

package/dist/SpreadsheetView/components/SpreadsheetViewActual.d.ts

@@ -1,5 +0,0 @@
-import type { SpreadsheetViewModel } from '../SpreadsheetViewModel';
-declare const SpreadsheetViewActual: ({ model, }: {
-    model: SpreadsheetViewModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default SpreadsheetViewActual;

package/dist/SpreadsheetView/components/SpreadsheetViewActual.js

@@ -1,34 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const SpreadsheetDataGrid_1 = __importDefault(require("./SpreadsheetDataGrid"));
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    contentArea: {
-        overflow: 'auto',
-        position: 'relative',
-        marginBottom: theme.spacing(1),
-        background: theme.palette.background.paper,
-    },
-    resizeHandle: {
-        height: 5,
-        boxSizing: 'border-box',
-        background: theme.palette.action.disabled,
-        borderTop: '1px solid #fafafa',
-    },
-}));
-const SpreadsheetViewActual = (0, mobx_react_1.observer)(function ({ model, }) {
-    const [initialHeight, setInitialHeight] = (0, react_1.useState)(0);
-    const { classes } = useStyles();
-    const { spreadsheet, hideVerticalResizeHandle, height } = model;
-    return spreadsheet ? ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)("div", { style: { height }, className: classes.contentArea, children: (0, jsx_runtime_1.jsx)(SpreadsheetDataGrid_1.default, { model: spreadsheet }) }), hideVerticalResizeHandle ? null : ((0, jsx_runtime_1.jsx)(ui_1.ResizeHandle, { onMouseDown: () => {
-                    setInitialHeight(height);
-                }, onDrag: (_, dist) => model.setHeight(initialHeight - dist), className: classes.resizeHandle }))] })) : ((0, jsx_runtime_1.jsx)("div", { children: "Unknown" }));
-});
-exports.default = SpreadsheetViewActual;

package/dist/SpreadsheetView/components/TrackSelector.d.ts

@@ -1,6 +0,0 @@
-import type { ImportWizardModel } from '../ImportWizard';
-declare const TrackSelector: ({ model, selectedAssembly, }: {
-    model: ImportWizardModel;
-    selectedAssembly: string;
-}) => import("react/jsx-runtime").JSX.Element;
-export default TrackSelector;

package/dist/SpreadsheetView/components/TrackSelector.js

@@ -1,27 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const util_1 = require("@jbrowse/core/util");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const TrackSelector = (0, mobx_react_1.observer)(function ({ model, selectedAssembly, }) {
-    var _a;
-    const filteredTracks = selectedAssembly
-        ? model.tracksForAssembly(selectedAssembly)
-        : undefined;
-    const resetTrack = ((_a = filteredTracks === null || filteredTracks === void 0 ? void 0 : filteredTracks[0]) === null || _a === void 0 ? void 0 : _a.track.trackId) || '';
-    const [selectedTrack, setSelectedTrack] = (0, react_1.useState)(resetTrack);
-    (0, react_1.useEffect)(() => {
-        const entry = filteredTracks === null || filteredTracks === void 0 ? void 0 : filteredTracks.find(f => selectedTrack === f.track.trackId);
-        if (entry) {
-            model.setFileSource(entry.loc);
-            model.setFileType(entry.type);
-        }
-    }, [model, selectedTrack, filteredTracks]);
-    return ((0, jsx_runtime_1.jsx)("div", { children: (filteredTracks === null || filteredTracks === void 0 ? void 0 : filteredTracks.length) ? ((0, jsx_runtime_1.jsx)(material_1.TextField, { select: true, label: "Tracks", variant: "outlined", value: selectedTrack, onChange: event => {
-                setSelectedTrack(event.target.value);
-            }, children: filteredTracks.map(({ track, label }) => ((0, jsx_runtime_1.jsx)(material_1.MenuItem, { value: track.trackId, children: (0, util_1.coarseStripHTML)(label) }, track.trackId))) })) : ((0, jsx_runtime_1.jsx)(ui_1.ErrorMessage, { error: `No tracks found for ${selectedAssembly}` })) }));
-});
-exports.default = TrackSelector;

package/dist/SpreadsheetView/components/util.d.ts

@@ -1 +0,0 @@
-export declare function numToColName(num: number): string;

package/dist/SpreadsheetView/components/util.js

@@ -1,17 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.numToColName = numToColName;
-function letterFor(n) {
-    return String.fromCharCode(n + 65);
-}
-function numToColName(num) {
-    if (num >= 0) {
-        if (num < 26) {
-            return letterFor(num);
-        }
-        if (num < 27 * 26) {
-            return letterFor(Math.floor(num / 26 - 1)) + letterFor(num % 26);
-        }
-    }
-    throw new RangeError('column number out of range');
-}

package/dist/SpreadsheetView/importAdapters/BedImport.d.ts

@@ -1,26 +0,0 @@
-export declare function parseBedBuffer(buffer: Uint8Array): {
-    columns: {
-        name: string;
-    }[];
-    rowSet: {
-        rows: {
-            cellData: {
-                refName: string | undefined;
-                start: number;
-                end: number;
-                name: string | undefined;
-                score: string | undefined;
-                strand: string | undefined;
-            };
-            feature: {
-                uniqueId: string;
-                refName: string | undefined;
-                start: number;
-                end: number;
-                name: string | undefined;
-                score: string | undefined;
-                strand: number | undefined;
-            };
-        }[];
-    };
-};

package/dist/SpreadsheetView/importAdapters/BedImport.js

@@ -1,58 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.parseBedBuffer = parseBedBuffer;
-const isNumber_1 = require("./isNumber");
-const util_1 = require("./util");
-function parseBedBuffer(buffer) {
-    var _a;
-    const lines = (0, util_1.bufferToLines)(buffer);
-    const rest = lines.filter(line => !(line.startsWith('#') ||
-        line.startsWith('browser') ||
-        line.startsWith('track')));
-    const lastHeaderLine = lines.findLast(line => line.startsWith('#'));
-    const coreColumns = ['refName', 'start', 'end'];
-    const numExtraColumns = Math.max(0, (((_a = rest[0]) === null || _a === void 0 ? void 0 : _a.split('\t').length) || 0) - coreColumns.length);
-    const extraNames = (lastHeaderLine === null || lastHeaderLine === void 0 ? void 0 : lastHeaderLine.includes('\t'))
-        ? lastHeaderLine
-            .slice(1)
-            .split('\t')
-            .slice(coreColumns.length)
-            .map(t => t.trim())
-        : Array.from({ length: numExtraColumns }, (_v, i) => `field_${i}`);
-    const colNames = [...coreColumns, ...extraNames];
-    return {
-        columns: colNames.map(c => ({ name: c })),
-        rowSet: {
-            rows: rest.map((line, idx) => {
-                const cols = line.split('\t');
-                return {
-                    cellData: {
-                        refName: cols[0],
-                        start: +cols[1],
-                        end: +cols[2],
-                        name: cols[3],
-                        score: cols[4],
-                        strand: cols[5],
-                        ...Object.fromEntries(extraNames.map((n, idx) => {
-                            const r = cols[idx + coreColumns.length];
-                            return [n, (0, isNumber_1.isNumber)(r) ? +r : r];
-                        })),
-                    },
-                    feature: {
-                        uniqueId: `bed-${idx}`,
-                        refName: cols[0],
-                        start: +cols[1],
-                        end: +cols[2],
-                        name: cols[3],
-                        score: cols[4],
-                        strand: (0, util_1.parseStrand)(cols[5]),
-                        ...Object.fromEntries(extraNames.map((n, idx) => {
-                            const r = cols[idx + coreColumns.length];
-                            return [n, (0, isNumber_1.isNumber)(r) ? +r : r];
-                        })),
-                    },
-                };
-            }),
-        },
-    };
-}

package/dist/SpreadsheetView/importAdapters/BedpeImport.d.ts

@@ -1,36 +0,0 @@
-export declare function parseBedPEBuffer(buffer: Uint8Array): {
-    columns: {
-        name: string;
-    }[];
-    rowSet: {
-        rows: {
-            cellData: {
-                refName: string | undefined;
-                start: string | undefined;
-                end: string | undefined;
-                mateRefName: string | undefined;
-                mateStart: string | undefined;
-                mateEnd: string | undefined;
-                name: string | undefined;
-                score: string | number | undefined;
-                strand: string | undefined;
-                mateStrand: string | undefined;
-            };
-            feature: {
-                uniqueId: string;
-                refName: string | undefined;
-                start: number;
-                end: number;
-                strand: number | undefined;
-                mate: {
-                    refName: string | undefined;
-                    start: number;
-                    end: number;
-                    strand: number | undefined;
-                };
-                name: string | undefined;
-                score: string | undefined;
-            };
-        }[];
-    };
-};

package/dist/SpreadsheetView/importAdapters/BedpeImport.js

@@ -1,79 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.parseBedPEBuffer = parseBedPEBuffer;
-const internals_1 = require("@mui/x-data-grid/internals");
-const util_1 = require("./util");
-function parseBedPEBuffer(buffer) {
-    var _a;
-    const lines = (0, util_1.bufferToLines)(buffer);
-    const rest = lines.filter(line => !(line.startsWith('#') ||
-        line.startsWith('browser') ||
-        line.startsWith('track')));
-    const lastHeaderLine = lines.findLast(line => line.startsWith('#'));
-    const coreColumns = [
-        'refName',
-        'start',
-        'end',
-        'mateRef',
-        'mateStart',
-        'mateEnd',
-        'name',
-        'score',
-        'strand',
-        'mateStrand',
-    ];
-    const numExtraColumns = Math.max(0, (((_a = rest[0]) === null || _a === void 0 ? void 0 : _a.split('\t').length) || 0) - coreColumns.length);
-    const extraNames = (lastHeaderLine === null || lastHeaderLine === void 0 ? void 0 : lastHeaderLine.includes('\t'))
-        ? lastHeaderLine
-            .slice(1)
-            .split('\t')
-            .slice(coreColumns.length)
-            .map(t => t.trim())
-        : Array.from({ length: numExtraColumns }, (_v, i) => `field_${i}`);
-    const colNames = [...coreColumns, ...extraNames];
-    return {
-        columns: colNames.map(c => ({ name: c })),
-        rowSet: {
-            rows: rest.map((line, idx) => {
-                const cols = line.split('\t');
-                return {
-                    cellData: {
-                        refName: cols[0],
-                        start: cols[1],
-                        end: cols[2],
-                        mateRefName: cols[3],
-                        mateStart: cols[4],
-                        mateEnd: cols[5],
-                        name: cols[6],
-                        score: +cols[7] || cols[7],
-                        strand: cols[8],
-                        mateStrand: cols[9],
-                        ...Object.fromEntries(extraNames.map((n, idx) => {
-                            const r = cols[idx + coreColumns.length];
-                            return [n, (0, internals_1.isNumber)(r) ? +r : r];
-                        })),
-                    },
-                    feature: {
-                        uniqueId: `bedpe-${idx}`,
-                        refName: cols[0],
-                        start: +cols[1],
-                        end: +cols[2],
-                        strand: (0, util_1.parseStrand)(cols[8]),
-                        mate: {
-                            refName: cols[3],
-                            start: +cols[4],
-                            end: +cols[5],
-                            strand: (0, util_1.parseStrand)(cols[9]),
-                        },
-                        name: cols[6],
-                        score: cols[7],
-                        ...Object.fromEntries(extraNames.map((n, idx) => {
-                            const r = cols[idx + coreColumns.length];
-                            return [n, (0, internals_1.isNumber)(r) ? +r : r];
-                        })),
-                    },
-                };
-            }),
-        },
-    };
-}