@jbrowse/plugin-spreadsheet-view 3.6.5 → 4.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/LaunchSpreadsheetView/index.js +6 -13
- package/esm/SpreadsheetView/ImportWizard.d.ts +11 -15
- package/esm/SpreadsheetView/ImportWizard.js +45 -47
- package/esm/SpreadsheetView/SpreadsheetModel.d.ts +13 -16
- package/esm/SpreadsheetView/SpreadsheetModel.js +14 -22
- package/esm/SpreadsheetView/SpreadsheetViewModel.d.ts +68 -171
- package/esm/SpreadsheetView/SpreadsheetViewModel.js +54 -16
- package/esm/SpreadsheetView/components/BreakpointSplitViewChoiceDialog.d.ts +1 -0
- package/esm/SpreadsheetView/components/BreakpointSplitViewChoiceDialog.js +1 -0
- package/esm/SpreadsheetView/components/FeatureMenu.js +6 -29
- package/esm/SpreadsheetView/components/ImportWizard.d.ts +1 -1
- package/esm/SpreadsheetView/components/ImportWizard.js +5 -6
- package/esm/SpreadsheetView/components/LocationCell.js +3 -3
- package/esm/SpreadsheetView/components/NumberEditor.d.ts +1 -1
- package/esm/SpreadsheetView/components/NumberEditor.js +2 -2
- package/esm/SpreadsheetView/components/SpreadsheetDataGrid.d.ts +1 -1
- package/esm/SpreadsheetView/components/SpreadsheetDataGrid.js +4 -3
- package/esm/SpreadsheetView/components/SpreadsheetView.d.ts +1 -1
- package/esm/SpreadsheetView/components/SpreadsheetView.js +4 -5
- package/esm/SpreadsheetView/components/SpreadsheetViewActual.d.ts +1 -1
- package/esm/SpreadsheetView/components/SpreadsheetViewActual.js +3 -3
- package/esm/SpreadsheetView/components/TrackSelector.d.ts +1 -1
- package/esm/SpreadsheetView/components/TrackSelector.js +4 -5
- package/esm/SpreadsheetView/importAdapters/BedImport.js +4 -5
- package/esm/SpreadsheetView/importAdapters/BedpeImport.js +3 -4
- package/esm/SpreadsheetView/importAdapters/STARFusionImport.js +2 -2
- package/esm/SpreadsheetView/importAdapters/VcfImport.js +6 -4
- package/esm/SpreadsheetView/index.d.ts +1 -1
- package/esm/SpreadsheetView/index.js +2 -2
- package/esm/index.d.ts +1 -1
- package/esm/index.js +4 -6
- package/package.json +29 -36
- package/dist/LaunchSpreadsheetView/index.d.ts +0 -2
- package/dist/LaunchSpreadsheetView/index.js +0 -21
- package/dist/SpreadsheetView/ImportWizard.d.ts +0 -51
- package/dist/SpreadsheetView/ImportWizard.js +0 -250
- package/dist/SpreadsheetView/SpreadsheetModel.d.ts +0 -78
- package/dist/SpreadsheetView/SpreadsheetModel.js +0 -119
- package/dist/SpreadsheetView/SpreadsheetViewModel.d.ts +0 -299
- package/dist/SpreadsheetView/SpreadsheetViewModel.js +0 -101
- package/dist/SpreadsheetView/components/BreakendMultiLevelOptionDialog.d.ts +0 -1
- package/dist/SpreadsheetView/components/BreakendMultiLevelOptionDialog.js +0 -5
- package/dist/SpreadsheetView/components/BreakendSingleLevelOptionDialog.d.ts +0 -1
- package/dist/SpreadsheetView/components/BreakendSingleLevelOptionDialog.js +0 -5
- package/dist/SpreadsheetView/components/FeatureMenu.d.ts +0 -7
- package/dist/SpreadsheetView/components/FeatureMenu.js +0 -105
- package/dist/SpreadsheetView/components/ImportWizard.d.ts +0 -5
- package/dist/SpreadsheetView/components/ImportWizard.js +0 -47
- package/dist/SpreadsheetView/components/LocationCell.d.ts +0 -7
- package/dist/SpreadsheetView/components/LocationCell.js +0 -29
- package/dist/SpreadsheetView/components/NumberEditor.d.ts +0 -8
- package/dist/SpreadsheetView/components/NumberEditor.js +0 -32
- package/dist/SpreadsheetView/components/SpreadsheetDataGrid.d.ts +0 -5
- package/dist/SpreadsheetView/components/SpreadsheetDataGrid.js +0 -23
- package/dist/SpreadsheetView/components/SpreadsheetView.d.ts +0 -5
- package/dist/SpreadsheetView/components/SpreadsheetView.js +0 -48
- package/dist/SpreadsheetView/components/SpreadsheetViewActual.d.ts +0 -5
- package/dist/SpreadsheetView/components/SpreadsheetViewActual.js +0 -34
- package/dist/SpreadsheetView/components/TrackSelector.d.ts +0 -6
- package/dist/SpreadsheetView/components/TrackSelector.js +0 -27
- package/dist/SpreadsheetView/components/util.d.ts +0 -1
- package/dist/SpreadsheetView/components/util.js +0 -17
- package/dist/SpreadsheetView/importAdapters/BedImport.d.ts +0 -26
- package/dist/SpreadsheetView/importAdapters/BedImport.js +0 -58
- package/dist/SpreadsheetView/importAdapters/BedpeImport.d.ts +0 -36
- package/dist/SpreadsheetView/importAdapters/BedpeImport.js +0 -79
- package/dist/SpreadsheetView/importAdapters/STARFusionImport.d.ts +0 -25
- package/dist/SpreadsheetView/importAdapters/STARFusionImport.js +0 -35
- package/dist/SpreadsheetView/importAdapters/VcfImport.d.ts +0 -20
- package/dist/SpreadsheetView/importAdapters/VcfImport.js +0 -66
- package/dist/SpreadsheetView/importAdapters/isNumber.d.ts +0 -1
- package/dist/SpreadsheetView/importAdapters/isNumber.js +0 -14
- package/dist/SpreadsheetView/importAdapters/util.d.ts +0 -2
- package/dist/SpreadsheetView/importAdapters/util.js +0 -22
- package/dist/SpreadsheetView/index.d.ts +0 -3
- package/dist/SpreadsheetView/index.js +0 -52
- package/dist/SpreadsheetView/util.d.ts +0 -7
- package/dist/SpreadsheetView/util.js +0 -13
- package/dist/index.d.ts +0 -8
- package/dist/index.js +0 -33
- package/esm/SpreadsheetView/components/BreakendMultiLevelOptionDialog.d.ts +0 -1
- package/esm/SpreadsheetView/components/BreakendMultiLevelOptionDialog.js +0 -1
- package/esm/SpreadsheetView/components/BreakendSingleLevelOptionDialog.d.ts +0 -1
- package/esm/SpreadsheetView/components/BreakendSingleLevelOptionDialog.js +0 -1
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import type { SimpleFeatureSerialized } from '@jbrowse/core/util';
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import type { Instance } from 'mobx-state-tree';
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export interface Row {
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feature?: SimpleFeatureSerialized;
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cellData?: Record<string, unknown>;
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cells?: {
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text: unknown;
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}[];
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}
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export interface RowSet {
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rows: Row[];
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}
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export default function stateModelFactory(): import("mobx-state-tree").IModelType<{
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rowSet: import("mobx-state-tree").IType<RowSet | undefined, RowSet | undefined, RowSet | undefined>;
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columns: import("mobx-state-tree").IType<{
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name: string;
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}[], {
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name: string;
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}[], {
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name: string;
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}[]>;
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assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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visibleColumns: import("mobx-state-tree").IType<Record<string, boolean>, Record<string, boolean>, Record<string, boolean>>;
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}, {
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visibleRowFlags: Record<number, boolean> | undefined;
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} & {
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readonly rows: {
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id: number;
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feature: SimpleFeatureSerialized | undefined;
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}[] | undefined;
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readonly initialized: boolean | undefined;
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} & {
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readonly dataGridColumns: ({
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field: string;
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width: number;
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type: "number" | undefined;
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} | {
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field: string;
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width: number;
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renderCell: ({ row }: import("@mui/x-data-grid").GridRenderCellParams<{
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id: number;
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feature: SimpleFeatureSerialized | undefined;
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}, any, any, import("@mui/x-data-grid").GridTreeNodeWithRender>) => import("react/jsx-runtime").JSX.Element | "N/A";
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type?: undefined;
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valueGetter?: undefined;
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valueFormatter?: undefined;
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} | {
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field: string;
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type: "number";
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width: number;
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valueGetter: (_val: unknown, row: {
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feature?: SimpleFeatureSerialized;
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}) => number | undefined;
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valueFormatter: (arg: never) => string;
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renderCell?: undefined;
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})[] | undefined;
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} & {
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readonly visibleRows: {
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id: number;
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feature: SimpleFeatureSerialized | undefined;
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}[] | undefined;
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} & {
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setVisibleRows(arg?: Record<number, boolean>): void;
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setVisibleColumns(arg: Record<string, boolean>): void;
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}, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
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rowSet: import("mobx-state-tree").IType<RowSet | undefined, RowSet | undefined, RowSet | undefined>;
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columns: import("mobx-state-tree").IType<{
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name: string;
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}[], {
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}[], {
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name: string;
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}[]>;
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assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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visibleColumns: import("mobx-state-tree").IType<Record<string, boolean>, Record<string, boolean>, Record<string, boolean>>;
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}>>, import("mobx-state-tree")._NotCustomized>;
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export type SpreadsheetStateModel = ReturnType<typeof stateModelFactory>;
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export type SpreadsheetModel = Instance<SpreadsheetStateModel>;
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"use strict";
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var __importDefault = (this && this.__importDefault) || function (mod) {
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return (mod && mod.__esModule) ? mod : { "default": mod };
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};
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.default = stateModelFactory;
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const jsx_runtime_1 = require("react/jsx-runtime");
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const util_1 = require("@jbrowse/core/util");
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const mobx_state_tree_1 = require("mobx-state-tree");
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const LocationCell_1 = __importDefault(require("./components/LocationCell"));
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function stateModelFactory() {
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return mobx_state_tree_1.types
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.model('Spreadsheet', {
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rowSet: mobx_state_tree_1.types.frozen(),
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columns: mobx_state_tree_1.types.frozen(),
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assemblyName: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
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visibleColumns: mobx_state_tree_1.types.frozen(),
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})
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.volatile(() => ({
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visibleRowFlags: undefined,
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}))
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.views(self => ({
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get rows() {
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var _a;
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return (_a = self.rowSet) === null || _a === void 0 ? void 0 : _a.rows.map((row, i) => ({
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id: i,
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feature: row.feature,
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...Object.fromEntries(self.columns.map((c, idx) => {
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var _a, _b, _c, _d;
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return [
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c.name,
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(_b = (_a = row.cellData) === null || _a === void 0 ? void 0 : _a[c.name]) !== null && _b !== void 0 ? _b : (_d = (_c = row.cells) === null || _c === void 0 ? void 0 : _c[idx]) === null || _d === void 0 ? void 0 : _d.text,
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];
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})),
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}));
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},
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get initialized() {
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var _a;
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const session = (0, util_1.getSession)(self);
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const name = self.assemblyName;
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return (self.rowSet &&
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(name ? (_a = session.assemblyManager.get(name)) === null || _a === void 0 ? void 0 : _a.initialized : false));
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},
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}))
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.views(self => ({
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get dataGridColumns() {
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const { rows } = self;
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return rows
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? [
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{
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field: 'Location',
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width: (0, util_1.measureGridWidth)(rows.map(row => row.feature ? (0, util_1.assembleLocStringFast)(row.feature) : 0)) + 40,
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renderCell: ({ row }) => {
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const { feature } = row;
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return feature ? ((0, jsx_runtime_1.jsx)(LocationCell_1.default, { model: self, feature: feature })) : ('N/A');
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},
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},
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{
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field: 'Length',
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type: 'number',
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width: (0, util_1.measureGridWidth)(rows.map(row => {
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const { feature } = row;
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return feature ? feature.end - feature.start : 0;
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})),
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valueGetter: (_val, row) => {
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const { feature } = row;
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return feature ? feature.end - feature.start : undefined;
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},
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valueFormatter: arg => (0, util_1.toLocale)(arg),
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},
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...self.columns.map(f => ({
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field: f.name,
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width: (0, util_1.measureGridWidth)([...rows.map(r => r[f.name]), f.name], { minWidth: 20 }),
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type: typeof rows[0][f.name] === 'number'
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? 'number'
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: undefined,
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})),
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]
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: undefined;
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},
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}))
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.views(self => ({
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get visibleRows() {
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const { visibleRowFlags } = self;
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return visibleRowFlags
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? (_a = self.rows) === null || _a === void 0 ? void 0 : _a.filter((_f, idx) => !!visibleRowFlags[idx])
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: self.rows;
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}))
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.actions(self => ({
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setVisibleRows(arg) {
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self.visibleRowFlags = arg;
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},
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setVisibleColumns(arg) {
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self.visibleColumns = arg;
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},
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}))
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.preProcessSnapshot(snap => {
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return snap
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? {
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columns: snap.columns.filter(f => !f.isDerived),
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rowSet: snap.rowSet
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? {
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rows: snap.rowSet.rows.map(r => {
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return ({
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});
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}
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import type { SpreadsheetModel } from './SpreadsheetModel';
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import type { MenuItem } from '@jbrowse/core/ui';
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import type { Instance } from 'mobx-state-tree';
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export default function stateModelFactory(): import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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} & {
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type: import("mobx-state-tree").ISimpleType<"SpreadsheetView">;
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offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
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height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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hideVerticalResizeHandle: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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hideFilterControls: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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importWizard: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
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fileType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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hasColumnNameLine: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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columnNameLineNumber: import("mobx-state-tree").IType<number | undefined, number, number>;
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selectedAssemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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cachedFileLocation: import("mobx-state-tree").IType<import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined>;
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}, {
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fileTypes: string[];
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error: unknown;
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loading: boolean;
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isValidRefName(refName: string, assemblyName?: string): boolean;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
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label: string;
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assemblyNames: any;
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loc: import("@jbrowse/core/util").FileLocation;
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}[];
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setSelectedAssemblyName(s: string): void;
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setColumnNameLineNumber(newnumber: number): void;
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setFileType(typeName: string): void;
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setError(error: unknown): void;
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setLoading(arg: boolean): void;
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cancelButton(): void;
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setCachedFileHandle(arg: import("@jbrowse/core/util").FileLocation): void;
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import(assemblyName: string): Promise<void>;
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afterAttach(): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
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spreadsheet: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IModelType<{
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rowSet: import("mobx-state-tree").IType<import("./SpreadsheetModel").RowSet | undefined, import("./SpreadsheetModel").RowSet | undefined, import("./SpreadsheetModel").RowSet | undefined>;
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assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}, {
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feature: import("@jbrowse/core/util").SimpleFeatureSerialized | undefined;
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}, any, any, import("@mui/x-data-grid").GridTreeNodeWithRender>) => import("react/jsx-runtime").JSX.Element | "N/A";
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type: "number";
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}) => number | undefined;
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})[] | undefined;
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} & {
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readonly visibleRows: {
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id: number;
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feature: import("@jbrowse/core/util").SimpleFeatureSerialized | undefined;
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} & {
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setVisibleRows(arg?: Record<number, boolean>): void;
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setVisibleColumns(arg: Record<string, boolean>): void;
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}, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
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rowSet: import("mobx-state-tree").IType<import("./SpreadsheetModel").RowSet | undefined, import("./SpreadsheetModel").RowSet | undefined, import("./SpreadsheetModel").RowSet | undefined>;
|
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columns: import("mobx-state-tree").IType<{
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name: string;
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}[], {
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name: string;
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}[], {
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}[]>;
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assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
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|
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visibleColumns: import("mobx-state-tree").IType<Record<string, boolean>, Record<string, boolean>, Record<string, boolean>>;
|
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|
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}>>, import("mobx-state-tree")._NotCustomized>>;
|
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|
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}, {
|
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|
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width: number;
|
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|
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} & {
|
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|
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menuItems(): MenuItem[];
|
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|
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} & {
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|
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setDisplayName(name: string): void;
|
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|
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setWidth(newWidth: number): void;
|
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|
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setMinimized(flag: boolean): void;
|
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|
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} & {
|
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|
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width: number;
|
|
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|
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rowMenuItems: MenuItem[];
|
|
136
|
-
} & {
|
|
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|
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readonly assembly: any;
|
|
138
|
-
} & {
|
|
139
|
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setRowMenuItems(newItems: MenuItem[]): void;
|
|
140
|
-
setWidth(newWidth: number): number;
|
|
141
|
-
setHeight(newHeight: number): number;
|
|
142
|
-
resizeHeight(distance: number): number;
|
|
143
|
-
resizeWidth(distance: number): number;
|
|
144
|
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displaySpreadsheet(spreadsheet?: SpreadsheetModel): void;
|
|
145
|
-
} & {
|
|
146
|
-
menuItems(): {
|
|
147
|
-
label: string;
|
|
148
|
-
icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
|
|
149
|
-
muiName: string;
|
|
150
|
-
};
|
|
151
|
-
onClick: () => void;
|
|
152
|
-
}[];
|
|
153
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree").ModelSnapshotType<{
|
|
154
|
-
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
155
|
-
displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
156
|
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minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
157
|
-
} & {
|
|
158
|
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type: import("mobx-state-tree").ISimpleType<"SpreadsheetView">;
|
|
159
|
-
offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
160
|
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height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
161
|
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hideVerticalResizeHandle: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
162
|
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hideFilterControls: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
163
|
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importWizard: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
|
|
164
|
-
fileType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
165
|
-
hasColumnNameLine: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
166
|
-
columnNameLineNumber: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
167
|
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selectedAssemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
168
|
-
cachedFileLocation: import("mobx-state-tree").IType<import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined>;
|
|
169
|
-
}, {
|
|
170
|
-
fileTypes: string[];
|
|
171
|
-
fileSource: any;
|
|
172
|
-
error: unknown;
|
|
173
|
-
loading: boolean;
|
|
174
|
-
} & {
|
|
175
|
-
readonly isReadyToOpen: any;
|
|
176
|
-
readonly fileName: any;
|
|
177
|
-
readonly requiresUnzip: any;
|
|
178
|
-
isValidRefName(refName: string, assemblyName?: string): boolean;
|
|
179
|
-
tracksForAssembly(selectedAssembly: string): {
|
|
180
|
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track: {
|
|
181
|
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[x: string]: any;
|
|
182
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
183
|
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setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
184
|
-
[x: string]: any;
|
|
185
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
186
|
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setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
187
|
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[x: string]: any;
|
|
188
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
189
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
190
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
|
|
191
|
-
label: string;
|
|
192
|
-
assemblyNames: any;
|
|
193
|
-
type: string;
|
|
194
|
-
loc: import("@jbrowse/core/util").FileLocation;
|
|
195
|
-
}[];
|
|
196
|
-
} & {
|
|
197
|
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setSelectedAssemblyName(s: string): void;
|
|
198
|
-
setFileSource(newSource: unknown): void;
|
|
199
|
-
setColumnNameLineNumber(newnumber: number): void;
|
|
200
|
-
setFileType(typeName: string): void;
|
|
201
|
-
setError(error: unknown): void;
|
|
202
|
-
setLoading(arg: boolean): void;
|
|
203
|
-
cancelButton(): void;
|
|
204
|
-
setCachedFileHandle(arg: import("@jbrowse/core/util").FileLocation): void;
|
|
205
|
-
} & {
|
|
206
|
-
import(assemblyName: string): Promise<void>;
|
|
207
|
-
} & {
|
|
208
|
-
afterAttach(): void;
|
|
209
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
|
|
210
|
-
spreadsheet: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IModelType<{
|
|
211
|
-
rowSet: import("mobx-state-tree").IType<import("./SpreadsheetModel").RowSet | undefined, import("./SpreadsheetModel").RowSet | undefined, import("./SpreadsheetModel").RowSet | undefined>;
|
|
212
|
-
columns: import("mobx-state-tree").IType<{
|
|
213
|
-
name: string;
|
|
214
|
-
}[], {
|
|
215
|
-
name: string;
|
|
216
|
-
}[], {
|
|
217
|
-
name: string;
|
|
218
|
-
}[]>;
|
|
219
|
-
assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
220
|
-
visibleColumns: import("mobx-state-tree").IType<Record<string, boolean>, Record<string, boolean>, Record<string, boolean>>;
|
|
221
|
-
}, {
|
|
222
|
-
visibleRowFlags: Record<number, boolean> | undefined;
|
|
223
|
-
} & {
|
|
224
|
-
readonly rows: {
|
|
225
|
-
id: number;
|
|
226
|
-
feature: import("@jbrowse/core/util").SimpleFeatureSerialized | undefined;
|
|
227
|
-
}[] | undefined;
|
|
228
|
-
readonly initialized: boolean | undefined;
|
|
229
|
-
} & {
|
|
230
|
-
readonly dataGridColumns: ({
|
|
231
|
-
field: string;
|
|
232
|
-
width: number;
|
|
233
|
-
type: "number" | undefined;
|
|
234
|
-
} | {
|
|
235
|
-
field: string;
|
|
236
|
-
width: number;
|
|
237
|
-
renderCell: ({ row }: import("@mui/x-data-grid").GridRenderCellParams<{
|
|
238
|
-
id: number;
|
|
239
|
-
feature: import("@jbrowse/core/util").SimpleFeatureSerialized | undefined;
|
|
240
|
-
}, any, any, import("@mui/x-data-grid").GridTreeNodeWithRender>) => import("react/jsx-runtime").JSX.Element | "N/A";
|
|
241
|
-
type?: undefined;
|
|
242
|
-
valueGetter?: undefined;
|
|
243
|
-
valueFormatter?: undefined;
|
|
244
|
-
} | {
|
|
245
|
-
field: string;
|
|
246
|
-
type: "number";
|
|
247
|
-
width: number;
|
|
248
|
-
valueGetter: (_val: unknown, row: {
|
|
249
|
-
feature?: import("@jbrowse/core/util").SimpleFeatureSerialized;
|
|
250
|
-
}) => number | undefined;
|
|
251
|
-
valueFormatter: (arg: never) => string;
|
|
252
|
-
renderCell?: undefined;
|
|
253
|
-
})[] | undefined;
|
|
254
|
-
} & {
|
|
255
|
-
readonly visibleRows: {
|
|
256
|
-
id: number;
|
|
257
|
-
feature: import("@jbrowse/core/util").SimpleFeatureSerialized | undefined;
|
|
258
|
-
}[] | undefined;
|
|
259
|
-
} & {
|
|
260
|
-
setVisibleRows(arg?: Record<number, boolean>): void;
|
|
261
|
-
setVisibleColumns(arg: Record<string, boolean>): void;
|
|
262
|
-
}, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
|
|
263
|
-
rowSet: import("mobx-state-tree").IType<import("./SpreadsheetModel").RowSet | undefined, import("./SpreadsheetModel").RowSet | undefined, import("./SpreadsheetModel").RowSet | undefined>;
|
|
264
|
-
columns: import("mobx-state-tree").IType<{
|
|
265
|
-
name: string;
|
|
266
|
-
}[], {
|
|
267
|
-
name: string;
|
|
268
|
-
}[], {
|
|
269
|
-
name: string;
|
|
270
|
-
}[]>;
|
|
271
|
-
assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
272
|
-
visibleColumns: import("mobx-state-tree").IType<Record<string, boolean>, Record<string, boolean>, Record<string, boolean>>;
|
|
273
|
-
}>>, import("mobx-state-tree")._NotCustomized>>;
|
|
274
|
-
}> | {
|
|
275
|
-
spreadsheet: {
|
|
276
|
-
columns: {
|
|
277
|
-
name: string;
|
|
278
|
-
}[];
|
|
279
|
-
assemblyName: string | undefined;
|
|
280
|
-
visibleColumns: Record<string, boolean>;
|
|
281
|
-
};
|
|
282
|
-
id: string;
|
|
283
|
-
type: "SpreadsheetView";
|
|
284
|
-
height: number;
|
|
285
|
-
displayName: string | undefined;
|
|
286
|
-
minimized: boolean;
|
|
287
|
-
hideVerticalResizeHandle: boolean;
|
|
288
|
-
offsetPx: number;
|
|
289
|
-
hideFilterControls: boolean;
|
|
290
|
-
importWizard: import("mobx-state-tree").ModelSnapshotType<{
|
|
291
|
-
fileType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
292
|
-
hasColumnNameLine: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
293
|
-
columnNameLineNumber: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
294
|
-
selectedAssemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
295
|
-
cachedFileLocation: import("mobx-state-tree").IType<import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined>;
|
|
296
|
-
}>;
|
|
297
|
-
}>;
|
|
298
|
-
export type SpreadsheetViewStateModel = ReturnType<typeof stateModelFactory>;
|
|
299
|
-
export type SpreadsheetViewModel = Instance<SpreadsheetViewStateModel>;
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"use strict";
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var __importDefault = (this && this.__importDefault) || function (mod) {
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return (mod && mod.__esModule) ? mod : { "default": mod };
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};
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.default = stateModelFactory;
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const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
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const util_1 = require("@jbrowse/core/util");
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const FolderOpen_1 = __importDefault(require("@mui/icons-material/FolderOpen"));
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const mobx_state_tree_1 = require("mobx-state-tree");
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const ImportWizard_1 = __importDefault(require("./ImportWizard"));
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const SpreadsheetModel_1 = __importDefault(require("./SpreadsheetModel"));
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const minHeight = 40;
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const defaultHeight = 440;
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function x() { }
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function stateModelFactory() {
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const ImportWizardModel = (0, ImportWizard_1.default)();
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return mobx_state_tree_1.types
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.compose(models_1.BaseViewModel, mobx_state_tree_1.types
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.model('SpreadsheetView', {
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type: mobx_state_tree_1.types.literal('SpreadsheetView'),
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offsetPx: 0,
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height: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.number, defaultHeight),
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hideVerticalResizeHandle: false,
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hideFilterControls: false,
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importWizard: mobx_state_tree_1.types.optional(ImportWizardModel, () => ImportWizardModel.create()),
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spreadsheet: mobx_state_tree_1.types.maybe((0, SpreadsheetModel_1.default)()),
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})
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.volatile(() => ({
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width: 400,
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rowMenuItems: [],
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}))
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.views(self => ({
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get assembly() {
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var _a, _b;
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const name = (_a = self.spreadsheet) === null || _a === void 0 ? void 0 : _a.assemblyName;
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return name
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? (_b = (0, util_1.getSession)(self).assemblyManager.get(name)) === null || _b === void 0 ? void 0 : _b.configuration
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: undefined;
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},
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}))
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.actions(self => ({
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setRowMenuItems(newItems) {
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self.rowMenuItems = newItems;
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},
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setWidth(newWidth) {
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self.width = newWidth;
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return self.width;
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},
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setHeight(newHeight) {
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self.height = Math.max(newHeight, minHeight);
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return self.height;
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},
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resizeHeight(distance) {
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const oldHeight = self.height;
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const newHeight = this.setHeight(self.height + distance);
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return newHeight - oldHeight;
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},
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resizeWidth(distance) {
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const oldWidth = self.width;
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const newWidth = this.setWidth(self.width + distance);
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return newWidth - oldWidth;
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},
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displaySpreadsheet(spreadsheet) {
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self.spreadsheet = (0, mobx_state_tree_1.cast)(spreadsheet);
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},
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}))
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.views(self => ({
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menuItems() {
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return [
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{
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label: 'Return to import form',
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icon: FolderOpen_1.default,
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onClick: () => {
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self.displaySpreadsheet(undefined);
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},
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},
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];
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},
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})))
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.postProcessSnapshot(snap => {
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const { importWizard, spreadsheet } = snap;
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if (importWizard.cachedFileLocation && spreadsheet) {
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const { rowSet, ...rest } = spreadsheet;
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return {
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...snap,
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spreadsheet: rest,
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};
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}
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else if (spreadsheet) {
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const { rowSet, ...rest } = spreadsheet;
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return rowSet && JSON.stringify(rowSet).length > 1000000
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? {
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...snap,
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spreadsheet: rest,
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}
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: snap;
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}
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return snap;
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});
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}
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export { BreakendMultiLevelOptionDialog as default } from '@jbrowse/sv-core';
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"use strict";
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.default = void 0;
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var sv_core_1 = require("@jbrowse/sv-core");
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Object.defineProperty(exports, "default", { enumerable: true, get: function () { return sv_core_1.BreakendMultiLevelOptionDialog; } });
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export { BreakendSingleLevelOptionDialog as default } from '@jbrowse/sv-core';
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"use strict";
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.default = void 0;
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var sv_core_1 = require("@jbrowse/sv-core");
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Object.defineProperty(exports, "default", { enumerable: true, get: function () { return sv_core_1.BreakendSingleLevelOptionDialog; } });
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import type { AbstractSessionModel, SimpleFeatureSerialized } from '@jbrowse/core/util';
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export default function FeatureMenu({ assemblyName, session, spreadsheetViewId, feature, }: {
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spreadsheetViewId: string;
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assemblyName: string;
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session: AbstractSessionModel;
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feature: SimpleFeatureSerialized;
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}): import("react/jsx-runtime").JSX.Element;
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