@jbrowse/plugin-spreadsheet-view 2.6.3 → 2.7.1

package/dist/SpreadsheetView/components/NumberEditor.d.ts

@@ -1,9 +1,9 @@
 import React from 'react';
 import { ImportWizardModel } from '../models/ImportWizard';
-declare const _default: ({ model, disabled, modelPropName, modelSetterName, }: {
+declare const NumberEditor: ({ model, disabled, modelPropName, modelSetterName, }: {
     model: ImportWizardModel;
     disabled: boolean;
     modelPropName: string;
     modelSetterName: string;
 }) => React.JSX.Element;
-export default _default;
+export default NumberEditor;

package/dist/SpreadsheetView/components/NumberEditor.js

@@ -33,7 +33,7 @@ const useStyles = (0, mui_1.makeStyles)()({
         verticalAlign: 'baseline',
     },
 });
-exports.default = (0, mobx_react_1.observer)(function ({ model, disabled, modelPropName, modelSetterName, }) {
+const NumberEditor = (0, mobx_react_1.observer)(function ({ model, disabled, modelPropName, modelSetterName, }) {
     // @ts-expect-error
     const [val, setVal] = (0, react_1.useState)(model[modelPropName]);
     const { classes } = useStyles();
@@ -51,3 +51,4 @@ exports.default = (0, mobx_react_1.observer)(function ({ model, disabled, modelP
     }, [model, modelSetterName, val]);
     return (react_1.default.createElement(material_1.TextField, { value: val, disabled: disabled, type: "number", onChange: evt => setVal(evt.target.value), className: classes.textField }));
 });
+exports.default = NumberEditor;

package/dist/SpreadsheetView/components/RowMenu.js

@@ -30,7 +30,7 @@ const RowMenu = (0, mobx_react_1.observer)(function ({ viewModel, spreadsheetMod
         }
         return item;
     });
-    return (react_1.default.createElement(ui_1.Menu, { anchorEl: currentRowMenu && currentRowMenu.anchorEl, open: Boolean(currentRowMenu), onMenuItemClick: handleMenuItemClick, onClose: rowMenuClose, menuItems: menuItems, anchorOrigin: {
+    return (react_1.default.createElement(ui_1.Menu, { anchorEl: currentRowMenu === null || currentRowMenu === void 0 ? void 0 : currentRowMenu.anchorEl, open: Boolean(currentRowMenu), onMenuItemClick: handleMenuItemClick, onClose: rowMenuClose, menuItems: menuItems, anchorOrigin: {
             vertical: 'bottom',
             horizontal: 'right',
         } }));

package/dist/SpreadsheetView/components/SpreadsheetView.d.ts

@@ -1,6 +1,6 @@
 import React from 'react';
 import { SpreadsheetViewModel } from '../models/SpreadsheetView';
-declare const _default: ({ model }: {
+declare const SpreadsheetView: ({ model, }: {
     model: SpreadsheetViewModel;
 }) => React.JSX.Element;
-export default _default;
+export default SpreadsheetView;

package/dist/SpreadsheetView/components/SpreadsheetView.js

@@ -61,7 +61,7 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
         borderTop: '1px solid #fafafa',
     },
 }));
-exports.default = (0, mobx_react_1.observer)(function ({ model }) {
+const SpreadsheetView = (0, mobx_react_1.observer)(function ({ model, }) {
     const { classes } = useStyles();
     const { spreadsheet, filterControls, hideFilterControls, hideVerticalResizeHandle, mode, height, } = model;
     const [page, setPage] = (0, react_1.useState)(0);
@@ -83,3 +83,4 @@ exports.default = (0, mobx_react_1.observer)(function ({ model }) {
         spreadsheet ? (react_1.default.createElement(StatusBar_1.default, { page: page, setPage: setPage, rowsPerPage: rowsPerPage, setRowsPerPage: setRowsPerPage, mode: mode, spreadsheet: spreadsheet })) : null,
         hideVerticalResizeHandle ? null : (react_1.default.createElement(ui_1.ResizeHandle, { onDrag: model.resizeHeight, className: classes.resizeHandle }))));
 });
+exports.default = SpreadsheetView;

package/dist/SpreadsheetView/importAdapters/ImportUtils.js

@@ -43,7 +43,7 @@ function guessColumnType(rowSet, columnNumber, isValidRefName) {
     catch (error) {
         //
     }
-    if (parsedLoc && parsedLoc.refName && typeof parsedLoc.start === 'number') {
+    if ((parsedLoc === null || parsedLoc === void 0 ? void 0 : parsedLoc.refName) && typeof parsedLoc.start === 'number') {
         guessedType = 'LocString';
     }
     else if (/^\d+(\.\d+)?$/.test(text)) {

package/dist/SpreadsheetView/models/ColumnDataTypes/LocString.js

@@ -120,7 +120,7 @@ const FilterModelType = mobx_state_tree_1.types
         return function stringPredicate(_sheet, row) {
             const { cellsWithDerived: cells } = row;
             const cell = cells[columnNumber];
-            if (!cell || !cell.text || !cell.extendedData) {
+            if (!(cell === null || cell === void 0 ? void 0 : cell.text) || !cell.extendedData) {
                 return false;
             }
             const parsedCellText = cell.extendedData;

package/dist/SpreadsheetView/models/ColumnDataTypes/Number.js

@@ -90,7 +90,7 @@ const FilterModelType = mobx_state_tree_1.types
         return function stringPredicate(_sheet, row) {
             const { cellsWithDerived } = row;
             const cell = cellsWithDerived[columnNumber];
-            if (!cell || !cell.text) {
+            if (!(cell === null || cell === void 0 ? void 0 : cell.text)) {
                 return false;
             }
             const parsedCellText = parseFloat(cell.text);

package/dist/SpreadsheetView/models/ColumnDataTypes/Text.js

@@ -30,7 +30,7 @@ const OPERATION_PREDICATES = {
         return textInCell.toLowerCase() === stringToFind;
     },
     'starts with': (textInCell, stringToFind) => {
-        return textInCell.toLowerCase().indexOf(stringToFind) === 0;
+        return textInCell.toLowerCase().startsWith(stringToFind);
     },
     'ends with': (textInCell, stringToFind) => {
         const index = textInCell.toLowerCase().indexOf(stringToFind);
@@ -100,7 +100,7 @@ const ColumnTextFilter = mobx_state_tree_1.types
         return function stringPredicate(_sheet, row) {
             const { cellsWithDerived } = row;
             const cell = cellsWithDerived[columnNumber];
-            if (!cell || !cell.text) {
+            if (!(cell === null || cell === void 0 ? void 0 : cell.text)) {
                 return false;
             }
             const predicate = OPERATION_PREDICATES[operation];

package/dist/SpreadsheetView/models/FilterControls.js

@@ -58,8 +58,8 @@ const model = mobx_state_tree_1.types
         };
     },
     rowPassesFilters(sheet, row) {
-        for (let i = 0; i < this.filters.length; i += 1) {
-            if (!this.filters[i].predicate(sheet, row)) {
+        for (const filter of this.filters) {
+            if (!filter.predicate(sheet, row)) {
                 return false;
             }
         }

package/dist/SpreadsheetView/models/ImportWizard.js

@@ -103,18 +103,19 @@ const ImportWizard = mobx_state_tree_1.types
         self.selectedAssemblyName = s;
     },
     setFileSource(newSource) {
+        var _a;
         self.fileSource = newSource;
         self.error = undefined;
         if (self.fileSource) {
             // try to autodetect the file type, ignore errors
             const name = self.fileName;
             if (name) {
-                const match = fileTypesRegexp.exec(name);
-                if (match && match[1]) {
+                const firstMatch = (_a = fileTypesRegexp.exec(name)) === null || _a === void 0 ? void 0 : _a[1];
+                if (firstMatch) {
                     self.fileType =
-                        match[1] === 'tsv' && name.includes('star-fusion')
+                        firstMatch === 'tsv' && name.includes('star-fusion')
                             ? 'STAR-Fusion'
-                            : match[1].toUpperCase();
+                            : firstMatch.toUpperCase();
                 }
             }
         }

package/dist/SpreadsheetView/models/Spreadsheet.js

@@ -111,8 +111,7 @@ const Spreadsheet = mobx_state_tree_1.types
      * #method
      */
     rowSortingComparisonFunction(rowA, rowB) {
-        for (let i = 0; i < self.sortColumns.length; i += 1) {
-            const { columnNumber, descending } = self.sortColumns[i];
+        for (const { columnNumber, descending } of self.sortColumns) {
             const { dataType } = self.columns[columnNumber];
             const result = dataType.compare(rowA.cellsWithDerived[columnNumber], rowB.cellsWithDerived[columnNumber]);
             if (result) {

package/dist/SpreadsheetView/models/SpreadsheetView.d.ts

@@ -361,9 +361,7 @@ declare const SpreadsheetView: import("mobx-state-tree").IModelType<{
             descending: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         }>>[]): void;
         setColumnType(columnNumber: number, newTypeName: string): void;
-        unselectAll(): void; /**
-         * #method
-         */
+        unselectAll(): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
 }, {
     width: number;

package/esm/SpreadsheetView/components/NumberEditor.d.ts

@@ -1,9 +1,9 @@
 import React from 'react';
 import { ImportWizardModel } from '../models/ImportWizard';
-declare const _default: ({ model, disabled, modelPropName, modelSetterName, }: {
+declare const NumberEditor: ({ model, disabled, modelPropName, modelSetterName, }: {
     model: ImportWizardModel;
     disabled: boolean;
     modelPropName: string;
     modelSetterName: string;
 }) => React.JSX.Element;
-export default _default;
+export default NumberEditor;

package/esm/SpreadsheetView/components/NumberEditor.js

@@ -8,7 +8,7 @@ const useStyles = makeStyles()({
         verticalAlign: 'baseline',
     },
 });
-export default observer(function ({ model, disabled, modelPropName, modelSetterName, }) {
+const NumberEditor = observer(function ({ model, disabled, modelPropName, modelSetterName, }) {
     // @ts-expect-error
     const [val, setVal] = useState(model[modelPropName]);
     const { classes } = useStyles();
@@ -26,3 +26,4 @@ export default observer(function ({ model, disabled, modelPropName, modelSetterN
     }, [model, modelSetterName, val]);
     return (React.createElement(TextField, { value: val, disabled: disabled, type: "number", onChange: evt => setVal(evt.target.value), className: classes.textField }));
 });
+export default NumberEditor;

package/esm/SpreadsheetView/components/RowMenu.js

@@ -25,7 +25,7 @@ const RowMenu = observer(function ({ viewModel, spreadsheetModel, }) {
         }
         return item;
     });
-    return (React.createElement(Menu, { anchorEl: currentRowMenu && currentRowMenu.anchorEl, open: Boolean(currentRowMenu), onMenuItemClick: handleMenuItemClick, onClose: rowMenuClose, menuItems: menuItems, anchorOrigin: {
+    return (React.createElement(Menu, { anchorEl: currentRowMenu === null || currentRowMenu === void 0 ? void 0 : currentRowMenu.anchorEl, open: Boolean(currentRowMenu), onMenuItemClick: handleMenuItemClick, onClose: rowMenuClose, menuItems: menuItems, anchorOrigin: {
             vertical: 'bottom',
             horizontal: 'right',
         } }));

package/esm/SpreadsheetView/components/SpreadsheetView.d.ts

@@ -1,6 +1,6 @@
 import React from 'react';
 import { SpreadsheetViewModel } from '../models/SpreadsheetView';
-declare const _default: ({ model }: {
+declare const SpreadsheetView: ({ model, }: {
     model: SpreadsheetViewModel;
 }) => React.JSX.Element;
-export default _default;
+export default SpreadsheetView;

package/esm/SpreadsheetView/components/SpreadsheetView.js

@@ -33,7 +33,7 @@ const useStyles = makeStyles()(theme => ({
         borderTop: '1px solid #fafafa',
     },
 }));
-export default observer(function ({ model }) {
+const SpreadsheetView = observer(function ({ model, }) {
     const { classes } = useStyles();
     const { spreadsheet, filterControls, hideFilterControls, hideVerticalResizeHandle, mode, height, } = model;
     const [page, setPage] = useState(0);
@@ -55,3 +55,4 @@ export default observer(function ({ model }) {
         spreadsheet ? (React.createElement(StatusBar, { page: page, setPage: setPage, rowsPerPage: rowsPerPage, setRowsPerPage: setRowsPerPage, mode: mode, spreadsheet: spreadsheet })) : null,
         hideVerticalResizeHandle ? null : (React.createElement(ResizeHandle, { onDrag: model.resizeHeight, className: classes.resizeHandle }))));
 });
+export default SpreadsheetView;

package/esm/SpreadsheetView/importAdapters/ImportUtils.js

@@ -16,7 +16,7 @@ function guessColumnType(rowSet, columnNumber, isValidRefName) {
     catch (error) {
         //
     }
-    if (parsedLoc && parsedLoc.refName && typeof parsedLoc.start === 'number') {
+    if ((parsedLoc === null || parsedLoc === void 0 ? void 0 : parsedLoc.refName) && typeof parsedLoc.start === 'number') {
         guessedType = 'LocString';
     }
     else if (/^\d+(\.\d+)?$/.test(text)) {

package/esm/SpreadsheetView/models/ColumnDataTypes/LocString.js

@@ -115,7 +115,7 @@ const FilterModelType = types
         return function stringPredicate(_sheet, row) {
             const { cellsWithDerived: cells } = row;
             const cell = cells[columnNumber];
-            if (!cell || !cell.text || !cell.extendedData) {
+            if (!(cell === null || cell === void 0 ? void 0 : cell.text) || !cell.extendedData) {
                 return false;
             }
             const parsedCellText = cell.extendedData;

package/esm/SpreadsheetView/models/ColumnDataTypes/Number.js

@@ -84,7 +84,7 @@ const FilterModelType = types
         return function stringPredicate(_sheet, row) {
             const { cellsWithDerived } = row;
             const cell = cellsWithDerived[columnNumber];
-            if (!cell || !cell.text) {
+            if (!(cell === null || cell === void 0 ? void 0 : cell.text)) {
                 return false;
             }
             const parsedCellText = parseFloat(cell.text);

package/esm/SpreadsheetView/models/ColumnDataTypes/Text.js

@@ -24,7 +24,7 @@ const OPERATION_PREDICATES = {
         return textInCell.toLowerCase() === stringToFind;
     },
     'starts with': (textInCell, stringToFind) => {
-        return textInCell.toLowerCase().indexOf(stringToFind) === 0;
+        return textInCell.toLowerCase().startsWith(stringToFind);
     },
     'ends with': (textInCell, stringToFind) => {
         const index = textInCell.toLowerCase().indexOf(stringToFind);
@@ -94,7 +94,7 @@ const ColumnTextFilter = types
         return function stringPredicate(_sheet, row) {
             const { cellsWithDerived } = row;
             const cell = cellsWithDerived[columnNumber];
-            if (!cell || !cell.text) {
+            if (!(cell === null || cell === void 0 ? void 0 : cell.text)) {
                 return false;
             }
             const predicate = OPERATION_PREDICATES[operation];

package/esm/SpreadsheetView/models/FilterControls.js

@@ -56,8 +56,8 @@ const model = types
         };
     },
     rowPassesFilters(sheet, row) {
-        for (let i = 0; i < this.filters.length; i += 1) {
-            if (!this.filters[i].predicate(sheet, row)) {
+        for (const filter of this.filters) {
+            if (!filter.predicate(sheet, row)) {
                 return false;
             }
         }

package/esm/SpreadsheetView/models/ImportWizard.js

@@ -78,18 +78,19 @@ const ImportWizard = types
         self.selectedAssemblyName = s;
     },
     setFileSource(newSource) {
+        var _a;
         self.fileSource = newSource;
         self.error = undefined;
         if (self.fileSource) {
             // try to autodetect the file type, ignore errors
             const name = self.fileName;
             if (name) {
-                const match = fileTypesRegexp.exec(name);
-                if (match && match[1]) {
+                const firstMatch = (_a = fileTypesRegexp.exec(name)) === null || _a === void 0 ? void 0 : _a[1];
+                if (firstMatch) {
                     self.fileType =
-                        match[1] === 'tsv' && name.includes('star-fusion')
+                        firstMatch === 'tsv' && name.includes('star-fusion')
                             ? 'STAR-Fusion'
-                            : match[1].toUpperCase();
+                            : firstMatch.toUpperCase();
                 }
             }
         }

package/esm/SpreadsheetView/models/Spreadsheet.js

@@ -106,8 +106,7 @@ const Spreadsheet = types
      * #method
      */
     rowSortingComparisonFunction(rowA, rowB) {
-        for (let i = 0; i < self.sortColumns.length; i += 1) {
-            const { columnNumber, descending } = self.sortColumns[i];
+        for (const { columnNumber, descending } of self.sortColumns) {
             const { dataType } = self.columns[columnNumber];
             const result = dataType.compare(rowA.cellsWithDerived[columnNumber], rowB.cellsWithDerived[columnNumber]);
             if (result) {

package/esm/SpreadsheetView/models/SpreadsheetView.d.ts

@@ -361,9 +361,7 @@ declare const SpreadsheetView: import("mobx-state-tree").IModelType<{
             descending: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         }>>[]): void;
         setColumnType(columnNumber: number, newTypeName: string): void;
-        unselectAll(): void; /**
-         * #method
-         */
+        unselectAll(): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
 }, {
     width: number;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-spreadsheet-view",
-  "version": "2.6.3",
+  "version": "2.7.1",
   "description": "JBrowse 2 spreadsheet view",
   "keywords": [
     "jbrowse",
@@ -38,7 +38,7 @@
   "dependencies": {
     "@gmod/bgzf-filehandle": "^1.4.3",
     "@gmod/vcf": "^5.0.9",
-    "@jbrowse/plugin-variants": "^2.6.3",
+    "@jbrowse/plugin-variants": "^2.7.1",
     "@mui/icons-material": "^5.0.1",
     "csvtojson": "^2.0.10"
   },
@@ -47,7 +47,7 @@
     "@jbrowse/plugin-linear-genome-view": "^2.0.0",
     "@mui/material": "^5.0.0",
     "mobx": "^6.0.0",
-    "mobx-react": "^7.0.0",
+    "mobx-react": "^9.0.0",
     "mobx-state-tree": "^5.0.0",
     "react": ">=16.8.0",
     "react-dom": ">=16.8.0",
@@ -60,5 +60,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "ed402c87efb0904858d602c363bd1757d5742129"
+  "gitHead": "2cda1611eebd12517f2a3cfc1b612face27005d4"
 }