@jbrowse/plugin-spreadsheet-view 2.6.1 → 2.6.2

package/src/SpreadsheetView/importAdapters/__snapshots__/STARFusionImport.test.ts.snap

@@ -1,2354 +0,0 @@
-// Jest Snapshot v1, https://goo.gl/fbAQLP
-
-exports[`starfusion import 1`] = `
-{
-  "assemblyName": "fogbat",
-  "columnDisplayOrder": [
-    0,
-    1,
-    2,
-    3,
-    4,
-    5,
-    6,
-    7,
-    8,
-    9,
-    10,
-    11,
-    12,
-    13,
-    14,
-  ],
-  "columns": [
-    {
-      "dataType": {
-        "type": "Text",
-      },
-      "name": "FusionName",
-    },
-    {
-      "dataType": {
-        "type": "Number",
-      },
-      "name": "JunctionReadCount",
-    },
-    {
-      "dataType": {
-        "type": "Number",
-      },
-      "name": "SpanningFragCount",
-    },
-    {
-      "dataType": {
-        "type": "Text",
-      },
-      "name": "SpliceType",
-    },
-    {
-      "dataType": {
-        "type": "Text",
-      },
-      "name": "LeftGene",
-    },
-    {
-      "dataType": {
-        "type": "Text",
-      },
-      "name": "LeftBreakpoint",
-    },
-    {
-      "dataType": {
-        "type": "Text",
-      },
-      "name": "RightGene",
-    },
-    {
-      "dataType": {
-        "type": "Text",
-      },
-      "name": "RightBreakpoint",
-    },
-    {
-      "dataType": {
-        "type": "Text",
-      },
-      "name": "LargeAnchorSupport",
-    },
-    {
-      "dataType": {
-        "type": "Number",
-      },
-      "name": "FFPM",
-    },
-    {
-      "dataType": {
-        "type": "Text",
-      },
-      "name": "LeftBreakDinuc",
-    },
-    {
-      "dataType": {
-        "type": "Number",
-      },
-      "name": "LeftBreakEntropy",
-    },
-    {
-      "dataType": {
-        "type": "Text",
-      },
-      "name": "RightBreakDinuc",
-    },
-    {
-      "dataType": {
-        "type": "Number",
-      },
-      "name": "RightBreakEntropy",
-    },
-    {
-      "dataType": {
-        "type": "Text",
-      },
-      "name": "annots",
-    },
-  ],
-  "hasColumnNames": true,
-  "rowSet": {
-    "isLoaded": true,
-    "rows": [
-      {
-        "cells": [
-          {
-            "columnNumber": 0,
-            "text": "THRA--AC090627.1",
-          },
-          {
-            "columnNumber": 1,
-            "text": "27",
-          },
-          {
-            "columnNumber": 2,
-            "text": "93",
-          },
-          {
-            "columnNumber": 3,
-            "text": "ONLY_REF_SPLICE",
-          },
-          {
-            "columnNumber": 4,
-            "text": "THRA^ENSG00000126351.8",
-          },
-          {
-            "columnNumber": 5,
-            "text": "chr17:38243106:+",
-          },
-          {
-            "columnNumber": 6,
-            "text": "AC090627.1^ENSG00000235300.3",
-          },
-          {
-            "columnNumber": 7,
-            "text": "chr17:46371709:+",
-          },
-          {
-            "columnNumber": 8,
-            "text": "YES_LDAS",
-          },
-          {
-            "columnNumber": 9,
-            "text": "23875.8456",
-          },
-          {
-            "columnNumber": 10,
-            "text": "GT",
-          },
-          {
-            "columnNumber": 11,
-            "text": "1.8892",
-          },
-          {
-            "columnNumber": 12,
-            "text": "AG",
-          },
-          {
-            "columnNumber": 13,
-            "text": "1.9656",
-          },
-          {
-            "columnNumber": 14,
-            "text": "["CCLE","FA_CancerSupp","INTRACHROMOSOMAL[chr17:8.12Mb]"]",
-          },
-        ],
-        "extendedData": {
-          "feature": {
-            "FFPM": 23875.8456,
-            "FusionName": "THRA--AC090627.1",
-            "JunctionReadCount": 27,
-            "LargeAnchorSupport": "YES_LDAS",
-            "LeftBreakDinuc": "GT",
-            "LeftBreakEntropy": 1.8892,
-            "LeftGene": "THRA^ENSG00000126351.8",
-            "RightBreakDinuc": "AG",
-            "RightBreakEntropy": 1.9656,
-            "RightGene": "AC090627.1^ENSG00000235300.3",
-            "SpanningFragCount": 93,
-            "SpliceType": "ONLY_REF_SPLICE",
-            "annots": "["CCLE","FA_CancerSupp","INTRACHROMOSOMAL[chr17:8.12Mb]"]",
-            "end": 38243106,
-            "mate": {
-              "end": 46371709,
-              "refName": "chr17",
-              "start": 46371709,
-              "strand": 1,
-            },
-            "refName": "chr17",
-            "start": 38243106,
-            "strand": 1,
-            "uniqueId": "sf-1",
-          },
-        },
-        "id": "1",
-      },
-      {
-        "cells": [
-          {
-            "columnNumber": 0,
-            "text": "THRA--AC090627.1",
-          },
-          {
-            "columnNumber": 1,
-            "text": "5",
-          },
-          {
-            "columnNumber": 2,
-            "text": "93",
-          },
-          {
-            "columnNumber": 3,
-            "text": "ONLY_REF_SPLICE",
-          },
-          {
-            "columnNumber": 4,
-            "text": "THRA^ENSG00000126351.8",
-          },
-          {
-            "columnNumber": 5,
-            "text": "chr17:38243106:+",
-          },
-          {
-            "columnNumber": 6,
-            "text": "AC090627.1^ENSG00000235300.3",
-          },
-          {
-            "columnNumber": 7,
-            "text": "chr17:46384693:+",
-          },
-          {
-            "columnNumber": 8,
-            "text": "YES_LDAS",
-          },
-          {
-            "columnNumber": 9,
-            "text": "19498.6072",
-          },
-          {
-            "columnNumber": 10,
-            "text": "GT",
-          },
-          {
-            "columnNumber": 11,
-            "text": "1.8892",
-          },
-          {
-            "columnNumber": 12,
-            "text": "AG",
-          },
-          {
-            "columnNumber": 13,
-            "text": "1.4295",
-          },
-          {
-            "columnNumber": 14,
-            "text": "["CCLE","FA_CancerSupp","INTRACHROMOSOMAL[chr17:8.12Mb]"]",
-          },
-        ],
-        "extendedData": {
-          "feature": {
-            "FFPM": 19498.6072,
-            "FusionName": "THRA--AC090627.1",
-            "JunctionReadCount": 5,
-            "LargeAnchorSupport": "YES_LDAS",
-            "LeftBreakDinuc": "GT",
-            "LeftBreakEntropy": 1.8892,
-            "LeftGene": "THRA^ENSG00000126351.8",
-            "RightBreakDinuc": "AG",
-            "RightBreakEntropy": 1.4295,
-            "RightGene": "AC090627.1^ENSG00000235300.3",
-            "SpanningFragCount": 93,
-            "SpliceType": "ONLY_REF_SPLICE",
-            "annots": "["CCLE","FA_CancerSupp","INTRACHROMOSOMAL[chr17:8.12Mb]"]",
-            "end": 38243106,
-            "mate": {
-              "end": 46384693,
-              "refName": "chr17",
-              "start": 46384693,
-              "strand": 1,
-            },
-            "refName": "chr17",
-            "start": 38243106,
-            "strand": 1,
-            "uniqueId": "sf-2",
-          },
-        },
-        "id": "2",
-      },
-      {
-        "cells": [
-          {
-            "columnNumber": 0,
-            "text": "ACACA--STAC2",
-          },
-          {
-            "columnNumber": 1,
-            "text": "12",
-          },
-          {
-            "columnNumber": 2,
-            "text": "52",
-          },
-          {
-            "columnNumber": 3,
-            "text": "ONLY_REF_SPLICE",
-          },
-          {
-            "columnNumber": 4,
-            "text": "ACACA^ENSG00000132142.15",
-          },
-          {
-            "columnNumber": 5,
-            "text": "chr17:35479453:-",
-          },
-          {
-            "columnNumber": 6,
-            "text": "STAC2^ENSG00000141750.6",
-          },
-          {
-            "columnNumber": 7,
-            "text": "chr17:37374426:-",
-          },
-          {
-            "columnNumber": 8,
-            "text": "YES_LDAS",
-          },
-          {
-            "columnNumber": 9,
-            "text": "12733.7844",
-          },
-          {
-            "columnNumber": 10,
-            "text": "GT",
-          },
-          {
-            "columnNumber": 11,
-            "text": "1.9656",
-          },
-          {
-            "columnNumber": 12,
-            "text": "AG",
-          },
-          {
-            "columnNumber": 13,
-            "text": "1.9656",
-          },
-          {
-            "columnNumber": 14,
-            "text": "["ChimerSeq","CCLE","Klijn_CellLines","FA_CancerSupp","INTRACHROMOSOMAL[chr17:1.60Mb]"]",
-          },
-        ],
-        "extendedData": {
-          "feature": {
-            "FFPM": 12733.7844,
-            "FusionName": "ACACA--STAC2",
-            "JunctionReadCount": 12,
-            "LargeAnchorSupport": "YES_LDAS",
-            "LeftBreakDinuc": "GT",
-            "LeftBreakEntropy": 1.9656,
-            "LeftGene": "ACACA^ENSG00000132142.15",
-            "RightBreakDinuc": "AG",
-            "RightBreakEntropy": 1.9656,
-            "RightGene": "STAC2^ENSG00000141750.6",
-            "SpanningFragCount": 52,
-            "SpliceType": "ONLY_REF_SPLICE",
-            "annots": "["ChimerSeq","CCLE","Klijn_CellLines","FA_CancerSupp","INTRACHROMOSOMAL[chr17:1.60Mb]"]",
-            "end": 35479453,
-            "mate": {
-              "end": 37374426,
-              "refName": "chr17",
-              "start": 37374426,
-              "strand": -1,
-            },
-            "refName": "chr17",
-            "start": 35479453,
-            "strand": -1,
-            "uniqueId": "sf-3",
-          },
-        },
-        "id": "3",
-      },
-      {
-        "cells": [
-          {
-            "columnNumber": 0,
-            "text": "RPS6KB1--SNF8",
-          },
-          {
-            "columnNumber": 1,
-            "text": "10",
-          },
-          {
-            "columnNumber": 2,
-            "text": "43",
-          },
-          {
-            "columnNumber": 3,
-            "text": "ONLY_REF_SPLICE",
-          },
-          {
-            "columnNumber": 4,
-            "text": "RPS6KB1^ENSG00000108443.9",
-          },
-          {
-            "columnNumber": 5,
-            "text": "chr17:57970686:+",
-          },
-          {
-            "columnNumber": 6,
-            "text": "SNF8^ENSG00000159210.5",
-          },
-          {
-            "columnNumber": 7,
-            "text": "chr17:47021337:-",
-          },
-          {
-            "columnNumber": 8,
-            "text": "YES_LDAS",
-          },
-          {
-            "columnNumber": 9,
-            "text": "10545.1651",
-          },
-          {
-            "columnNumber": 10,
-            "text": "GT",
-          },
-          {
-            "columnNumber": 11,
-            "text": "1.3753",
-          },
-          {
-            "columnNumber": 12,
-            "text": "AG",
-          },
-          {
-            "columnNumber": 13,
-            "text": "1.8323",
-          },
-          {
-            "columnNumber": 14,
-            "text": "["Klijn_CellLines","FA_CancerSupp","ChimerSeq","CCLE","INTRACHROMOSOMAL[chr17:10.95Mb]"]",
-          },
-        ],
-        "extendedData": {
-          "feature": {
-            "FFPM": 10545.1651,
-            "FusionName": "RPS6KB1--SNF8",
-            "JunctionReadCount": 10,
-            "LargeAnchorSupport": "YES_LDAS",
-            "LeftBreakDinuc": "GT",
-            "LeftBreakEntropy": 1.3753,
-            "LeftGene": "RPS6KB1^ENSG00000108443.9",
-            "RightBreakDinuc": "AG",
-            "RightBreakEntropy": 1.8323,
-            "RightGene": "SNF8^ENSG00000159210.5",
-            "SpanningFragCount": 43,
-            "SpliceType": "ONLY_REF_SPLICE",
-            "annots": "["Klijn_CellLines","FA_CancerSupp","ChimerSeq","CCLE","INTRACHROMOSOMAL[chr17:10.95Mb]"]",
-            "end": 57970686,
-            "mate": {
-              "end": 47021337,
-              "refName": "chr17",
-              "start": 47021337,
-              "strand": -1,
-            },
-            "refName": "chr17",
-            "start": 57970686,
-            "strand": 1,
-            "uniqueId": "sf-4",
-          },
-        },
-        "id": "4",
-      },
-      {
-        "cells": [
-          {
-            "columnNumber": 0,
-            "text": "TOB1--SYNRG",
-          },
-          {
-            "columnNumber": 1,
-            "text": "8",
-          },
-          {
-            "columnNumber": 2,
-            "text": "30",
-          },
-          {
-            "columnNumber": 3,
-            "text": "ONLY_REF_SPLICE",
-          },
-          {
-            "columnNumber": 4,
-            "text": "TOB1^ENSG00000141232.4",
-          },
-          {
-            "columnNumber": 5,
-            "text": "chr17:48943419:-",
-          },
-          {
-            "columnNumber": 6,
-            "text": "SYNRG^ENSG00000006114.11",
-          },
-          {
-            "columnNumber": 7,
-            "text": "chr17:35880751:-",
-          },
-          {
-            "columnNumber": 8,
-            "text": "YES_LDAS",
-          },
-          {
-            "columnNumber": 9,
-            "text": "7560.6844",
-          },
-          {
-            "columnNumber": 10,
-            "text": "GT",
-          },
-          {
-            "columnNumber": 11,
-            "text": "1.4566",
-          },
-          {
-            "columnNumber": 12,
-            "text": "AG",
-          },
-          {
-            "columnNumber": 13,
-            "text": "1.8892",
-          },
-          {
-            "columnNumber": 14,
-            "text": "["FA_CancerSupp","CCLE","INTRACHROMOSOMAL[chr17:12.97Mb]"]",
-          },
-        ],
-        "extendedData": {
-          "feature": {
-            "FFPM": 7560.6844,
-            "FusionName": "TOB1--SYNRG",
-            "JunctionReadCount": 8,
-            "LargeAnchorSupport": "YES_LDAS",
-            "LeftBreakDinuc": "GT",
-            "LeftBreakEntropy": 1.4566,
-            "LeftGene": "TOB1^ENSG00000141232.4",
-            "RightBreakDinuc": "AG",
-            "RightBreakEntropy": 1.8892,
-            "RightGene": "SYNRG^ENSG00000006114.11",
-            "SpanningFragCount": 30,
-            "SpliceType": "ONLY_REF_SPLICE",
-            "annots": "["FA_CancerSupp","CCLE","INTRACHROMOSOMAL[chr17:12.97Mb]"]",
-            "end": 48943419,
-            "mate": {
-              "end": 35880751,
-              "refName": "chr17",
-              "start": 35880751,
-              "strand": -1,
-            },
-            "refName": "chr17",
-            "start": 48943419,
-            "strand": -1,
-            "uniqueId": "sf-5",
-          },
-        },
-        "id": "5",
-      },
-      {
-        "cells": [
-          {
-            "columnNumber": 0,
-            "text": "VAPB--IKZF3",
-          },
-          {
-            "columnNumber": 1,
-            "text": "4",
-          },
-          {
-            "columnNumber": 2,
-            "text": "46",
-          },
-          {
-            "columnNumber": 3,
-            "text": "ONLY_REF_SPLICE",
-          },
-          {
-            "columnNumber": 4,
-            "text": "VAPB^ENSG00000124164.11",
-          },
-          {
-            "columnNumber": 5,
-            "text": "chr20:56964573:+",
-          },
-          {
-            "columnNumber": 6,
-            "text": "IKZF3^ENSG00000161405.12",
-          },
-          {
-            "columnNumber": 7,
-            "text": "chr17:37934020:-",
-          },
-          {
-            "columnNumber": 8,
-            "text": "YES_LDAS",
-          },
-          {
-            "columnNumber": 9,
-            "text": "9948.269",
-          },
-          {
-            "columnNumber": 10,
-            "text": "GT",
-          },
-          {
-            "columnNumber": 11,
-            "text": "1.9656",
-          },
-          {
-            "columnNumber": 12,
-            "text": "AG",
-          },
-          {
-            "columnNumber": 13,
-            "text": "1.7819",
-          },
-          {
-            "columnNumber": 14,
-            "text": "["FA_CancerSupp","Klijn_CellLines","CCLE","ChimerSeq","ChimerPub","INTERCHROMOSOMAL[chr20--chr17]"]",
-          },
-        ],
-        "extendedData": {
-          "feature": {
-            "FFPM": 9948.269,
-            "FusionName": "VAPB--IKZF3",
-            "JunctionReadCount": 4,
-            "LargeAnchorSupport": "YES_LDAS",
-            "LeftBreakDinuc": "GT",
-            "LeftBreakEntropy": 1.9656,
-            "LeftGene": "VAPB^ENSG00000124164.11",
-            "RightBreakDinuc": "AG",
-            "RightBreakEntropy": 1.7819,
-            "RightGene": "IKZF3^ENSG00000161405.12",
-            "SpanningFragCount": 46,
-            "SpliceType": "ONLY_REF_SPLICE",
-            "annots": "["FA_CancerSupp","Klijn_CellLines","CCLE","ChimerSeq","ChimerPub","INTERCHROMOSOMAL[chr20--chr17]"]",
-            "end": 56964573,
-            "mate": {
-              "end": 37934020,
-              "refName": "chr17",
-              "start": 37934020,
-              "strand": -1,
-            },
-            "refName": "chr20",
-            "start": 56964573,
-            "strand": 1,
-            "uniqueId": "sf-6",
-          },
-        },
-        "id": "6",
-      },
-      {
-        "cells": [
-          {
-            "columnNumber": 0,
-            "text": "ZMYND8--CEP250",
-          },
-          {
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-            "text": "2",
-          },
-          {
-            "columnNumber": 2,
-            "text": "44",
-          },
-          {
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-            "text": "ONLY_REF_SPLICE",
-          },
-          {
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-            "text": "ZMYND8^ENSG00000101040.15",
-          },
-          {
-            "columnNumber": 5,
-            "text": "chr20:45852970:-",
-          },
-          {
-            "columnNumber": 6,
-            "text": "CEP250^ENSG00000126001.11",
-          },
-          {
-            "columnNumber": 7,
-            "text": "chr20:34078463:+",
-          },
-          {
-            "columnNumber": 8,
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-          },
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-            "text": "9152.4075",
-          },
-          {
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-            "text": "GT",
-          },
-          {
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-          },
-          {
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-            "text": "AG",
-          },
-          {
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-            "text": "1.8062",
-          },
-          {
-            "columnNumber": 14,
-            "text": "["FA_CancerSupp","CCLE","ChimerSeq","INTRACHROMOSOMAL[chr20:11.74Mb]"]",
-          },
-        ],
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-            "LeftGene": "ZMYND8^ENSG00000101040.15",
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-            "SpliceType": "ONLY_REF_SPLICE",
-            "annots": "["FA_CancerSupp","CCLE","ChimerSeq","INTRACHROMOSOMAL[chr20:11.74Mb]"]",
-            "end": 45852970,
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-              "refName": "chr20",
-              "start": 34078463,
-              "strand": 1,
-            },
-            "refName": "chr20",
-            "start": 45852970,
-            "strand": -1,
-            "uniqueId": "sf-7",
-          },
-        },
-        "id": "7",
-      },
-      {
-        "cells": [
-          {
-            "columnNumber": 0,
-            "text": "AHCTF1--NAAA",
-          },
-          {
-            "columnNumber": 1,
-            "text": "3",
-          },
-          {
-            "columnNumber": 2,
-            "text": "38",
-          },
-          {
-            "columnNumber": 3,
-            "text": "ONLY_REF_SPLICE",
-          },
-          {
-            "columnNumber": 4,
-            "text": "AHCTF1^ENSG00000153207.10",
-          },
-          {
-            "columnNumber": 5,
-            "text": "chr1:247094880:-",
-          },
-          {
-            "columnNumber": 6,
-            "text": "NAAA^ENSG00000138744.10",
-          },
-          {
-            "columnNumber": 7,
-            "text": "chr4:76846964:-",
-          },
-          {
-            "columnNumber": 8,
-            "text": "YES_LDAS",
-          },
-          {
-            "columnNumber": 9,
-            "text": "8157.5805",
-          },
-          {
-            "columnNumber": 10,
-            "text": "GT",
-          },
-          {
-            "columnNumber": 11,
-            "text": "1.7232",
-          },
-          {
-            "columnNumber": 12,
-            "text": "AG",
-          },
-          {
-            "columnNumber": 13,
-            "text": "1.8062",
-          },
-          {
-            "columnNumber": 14,
-            "text": "["FA_CancerSupp","CCLE","INTERCHROMOSOMAL[chr1--chr4]"]",
-          },
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