@jbrowse/plugin-sequence 3.7.0 → 4.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (97) hide show
  1. package/esm/BgzipFastaAdapter/BgzipFastaAdapter.d.ts +1 -1
  2. package/esm/BgzipFastaAdapter/BgzipFastaAdapter.js +1 -1
  3. package/esm/BgzipFastaAdapter/configSchema.d.ts +2 -2
  4. package/esm/BgzipFastaAdapter/index.js +2 -2
  5. package/esm/ChromSizesAdapter/ChromSizesAdapter.js +1 -0
  6. package/esm/ChromSizesAdapter/configSchema.d.ts +2 -2
  7. package/esm/ChromSizesAdapter/index.js +2 -2
  8. package/esm/DivSequenceRenderer/components/DivSequenceRendering.js +24 -7
  9. package/esm/DivSequenceRenderer/components/Sequence.js +20 -10
  10. package/esm/DivSequenceRenderer/components/Translation.js +27 -19
  11. package/esm/DivSequenceRenderer/configSchema.d.ts +2 -2
  12. package/esm/DivSequenceRenderer/index.js +6 -12
  13. package/esm/IndexedFastaAdapter/IndexedFastaAdapter.js +15 -23
  14. package/esm/IndexedFastaAdapter/configSchema.d.ts +2 -2
  15. package/esm/IndexedFastaAdapter/index.js +2 -2
  16. package/esm/LinearReferenceSequenceDisplay/configSchema.d.ts +4 -4
  17. package/esm/LinearReferenceSequenceDisplay/configSchema.js +1 -1
  18. package/esm/LinearReferenceSequenceDisplay/index.js +2 -2
  19. package/esm/LinearReferenceSequenceDisplay/model.d.ts +1047 -104
  20. package/esm/LinearReferenceSequenceDisplay/model.js +16 -4
  21. package/esm/ReferenceSequenceTrack/configSchema.d.ts +6 -6
  22. package/esm/ReferenceSequenceTrack/configSchema.js +3 -3
  23. package/esm/ReferenceSequenceTrack/index.js +13 -2
  24. package/esm/SequenceSearchAdapter/SequenceSearchAdapter.d.ts +2 -2
  25. package/esm/SequenceSearchAdapter/SequenceSearchAdapter.js +3 -9
  26. package/esm/SequenceSearchAdapter/configSchema.d.ts +2 -2
  27. package/esm/SequenceSearchAdapter/index.js +2 -2
  28. package/esm/TwoBitAdapter/TwoBitAdapter.js +1 -0
  29. package/esm/TwoBitAdapter/configSchema.d.ts +2 -2
  30. package/esm/TwoBitAdapter/index.js +2 -2
  31. package/esm/UnindexedFastaAdapter/UnindexedFastaAdapter.js +1 -0
  32. package/esm/UnindexedFastaAdapter/configSchema.d.ts +2 -2
  33. package/esm/UnindexedFastaAdapter/index.js +2 -2
  34. package/esm/index.js +11 -14
  35. package/esm/saveTrackFormats/fasta.d.ts +4 -0
  36. package/esm/saveTrackFormats/fasta.js +13 -0
  37. package/package.json +28 -34
  38. package/dist/BgzipFastaAdapter/BgzipFastaAdapter.d.ts +0 -7
  39. package/dist/BgzipFastaAdapter/BgzipFastaAdapter.js +0 -22
  40. package/dist/BgzipFastaAdapter/configSchema.d.ts +0 -32
  41. package/dist/BgzipFastaAdapter/configSchema.js +0 -54
  42. package/dist/BgzipFastaAdapter/index.d.ts +0 -2
  43. package/dist/BgzipFastaAdapter/index.js +0 -54
  44. package/dist/ChromSizesAdapter/ChromSizesAdapter.d.ts +0 -15
  45. package/dist/ChromSizesAdapter/ChromSizesAdapter.js +0 -40
  46. package/dist/ChromSizesAdapter/configSchema.d.ts +0 -10
  47. package/dist/ChromSizesAdapter/configSchema.js +0 -27
  48. package/dist/ChromSizesAdapter/index.d.ts +0 -2
  49. package/dist/ChromSizesAdapter/index.js +0 -52
  50. package/dist/DivSequenceRenderer/components/DivSequenceRendering.d.ts +0 -18
  51. package/dist/DivSequenceRenderer/components/DivSequenceRendering.js +0 -44
  52. package/dist/DivSequenceRenderer/components/Sequence.d.ts +0 -10
  53. package/dist/DivSequenceRenderer/components/Sequence.js +0 -25
  54. package/dist/DivSequenceRenderer/components/Translation.d.ts +0 -14
  55. package/dist/DivSequenceRenderer/components/Translation.js +0 -49
  56. package/dist/DivSequenceRenderer/configSchema.d.ts +0 -8
  57. package/dist/DivSequenceRenderer/configSchema.js +0 -12
  58. package/dist/DivSequenceRenderer/index.d.ts +0 -2
  59. package/dist/DivSequenceRenderer/index.js +0 -30
  60. package/dist/IndexedFastaAdapter/IndexedFastaAdapter.d.ts +0 -25
  61. package/dist/IndexedFastaAdapter/IndexedFastaAdapter.js +0 -112
  62. package/dist/IndexedFastaAdapter/configSchema.d.ts +0 -25
  63. package/dist/IndexedFastaAdapter/configSchema.js +0 -40
  64. package/dist/IndexedFastaAdapter/index.d.ts +0 -2
  65. package/dist/IndexedFastaAdapter/index.js +0 -54
  66. package/dist/LinearReferenceSequenceDisplay/configSchema.d.ts +0 -9
  67. package/dist/LinearReferenceSequenceDisplay/configSchema.js +0 -12
  68. package/dist/LinearReferenceSequenceDisplay/index.d.ts +0 -2
  69. package/dist/LinearReferenceSequenceDisplay/index.js +0 -21
  70. package/dist/LinearReferenceSequenceDisplay/model.d.ts +0 -338
  71. package/dist/LinearReferenceSequenceDisplay/model.js +0 -132
  72. package/dist/ReferenceSequenceTrack/configSchema.d.ts +0 -37
  73. package/dist/ReferenceSequenceTrack/configSchema.js +0 -83
  74. package/dist/ReferenceSequenceTrack/index.d.ts +0 -2
  75. package/dist/ReferenceSequenceTrack/index.js +0 -20
  76. package/dist/SequenceSearchAdapter/SequenceSearchAdapter.d.ts +0 -8
  77. package/dist/SequenceSearchAdapter/SequenceSearchAdapter.js +0 -84
  78. package/dist/SequenceSearchAdapter/configSchema.d.ts +0 -24
  79. package/dist/SequenceSearchAdapter/configSchema.js +0 -28
  80. package/dist/SequenceSearchAdapter/index.d.ts +0 -2
  81. package/dist/SequenceSearchAdapter/index.js +0 -54
  82. package/dist/TwoBitAdapter/TwoBitAdapter.d.ts +0 -28
  83. package/dist/TwoBitAdapter/TwoBitAdapter.js +0 -85
  84. package/dist/TwoBitAdapter/configSchema.d.ts +0 -18
  85. package/dist/TwoBitAdapter/configSchema.js +0 -43
  86. package/dist/TwoBitAdapter/index.d.ts +0 -2
  87. package/dist/TwoBitAdapter/index.js +0 -52
  88. package/dist/UnindexedFastaAdapter/UnindexedFastaAdapter.d.ts +0 -31
  89. package/dist/UnindexedFastaAdapter/UnindexedFastaAdapter.js +0 -86
  90. package/dist/UnindexedFastaAdapter/configSchema.d.ts +0 -23
  91. package/dist/UnindexedFastaAdapter/configSchema.js +0 -40
  92. package/dist/UnindexedFastaAdapter/index.d.ts +0 -2
  93. package/dist/UnindexedFastaAdapter/index.js +0 -54
  94. package/dist/createExtensionPoints.d.ts +0 -2
  95. package/dist/createExtensionPoints.js +0 -86
  96. package/dist/index.d.ts +0 -6
  97. package/dist/index.js +0 -35
@@ -1,27 +1,27 @@
1
1
  import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
2
- export declare function modelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
3
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
4
- type: import("mobx-state-tree").ISimpleType<string>;
5
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
6
- } & {
7
- heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
8
- } & {
9
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
10
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
11
- } & {
12
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
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- key: import("mobx-state-tree").ISimpleType<string>;
14
- region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
15
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
16
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
17
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2
+ export declare function modelFactory(configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
3
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
4
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
5
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
6
+ } & {
7
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
8
+ } & {
9
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
10
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
11
+ } & {
12
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
13
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
14
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
15
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
16
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
17
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
18
18
  }, {
19
- stopToken: string | undefined;
19
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
20
20
  filled: boolean;
21
21
  reactElement: React.ReactElement | undefined;
22
22
  features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
23
23
  layout: any;
24
- status: string;
24
+ blockStatusMessage: string;
25
25
  error: unknown;
26
26
  message: string | undefined;
27
27
  maxHeightReached: boolean;
@@ -29,25 +29,32 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
29
29
  model: {
30
30
  error?: unknown;
31
31
  reload: () => void;
32
- message: React.ReactNode;
33
- filled?: boolean;
34
- status?: string;
32
+ message?: React.ReactNode;
33
+ statusMessage?: string;
35
34
  reactElement?: React.ReactElement;
35
+ isRenderingPending?: boolean;
36
36
  };
37
- }) => import("react/jsx-runtime").JSX.Element | undefined;
37
+ }) => import("react/jsx-runtime").JSX.Element;
38
38
  renderProps: any;
39
+ renderArgs: Record<string, unknown> | undefined;
40
+ isRenderingPending: boolean;
41
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
39
42
  } & {
40
43
  doReload(): void;
41
- afterAttach(): void;
42
- setStatus(message: string): void;
43
- setLoading(newStopToken: string): void;
44
+ setStatusMessage(message: string): void;
45
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
44
46
  setMessage(messageText: string): void;
45
47
  setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
46
48
  setError(error: unknown): void;
47
49
  reload(): void;
50
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
48
51
  beforeDestroy(): void;
49
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
50
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
52
+ } & {
53
+ readonly statusMessage: any;
54
+ } & {
55
+ afterAttach(): void;
56
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
57
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
51
58
  maxFeatureScreenDensity: {
52
59
  type: string;
53
60
  description: string;
@@ -74,36 +81,38 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
74
81
  description: string;
75
82
  defaultValue: never[];
76
83
  };
77
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
84
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
85
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
86
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
78
87
  } & {
79
- type: import("mobx-state-tree").ISimpleType<"LinearReferenceSequenceDisplay">;
88
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearReferenceSequenceDisplay">;
80
89
  configuration: AnyConfigurationSchemaType;
81
- showForward: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
82
- showReverse: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
83
- showTranslation: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
90
+ showForward: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
91
+ showReverse: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
92
+ showTranslation: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
84
93
  }, {
85
94
  rendererTypeName: string;
86
95
  error: unknown;
87
- message: string | undefined;
96
+ statusMessage: string | undefined;
88
97
  } & {
89
98
  readonly RenderingComponent: React.FC<{
90
99
  model: {
91
100
  id: string;
92
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  type: string;
93
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  rpcDriverName: string | undefined;
94
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
103
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
95
104
  rendererTypeName: string;
96
105
  error: unknown;
97
- message: string | undefined;
98
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
99
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
100
- type: import("mobx-state-tree").ISimpleType<string>;
101
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
106
+ statusMessage: string | undefined;
107
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
108
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
109
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
110
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
102
111
  }, {
103
112
  rendererTypeName: string;
104
113
  error: unknown;
105
- message: string | undefined;
106
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
114
+ statusMessage: string | undefined;
115
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
107
116
  onHorizontalScroll?: () => void;
108
117
  blockState?: Record<string, any>;
109
118
  }>;
@@ -112,30 +121,142 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
112
121
  id: string;
113
122
  type: string;
114
123
  rpcDriverName: string | undefined;
115
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
124
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
116
125
  rendererTypeName: string;
117
126
  error: unknown;
118
- message: string | undefined;
119
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
120
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
121
- type: import("mobx-state-tree").ISimpleType<string>;
122
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
127
+ statusMessage: string | undefined;
128
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
129
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
130
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
131
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
123
132
  }, {
124
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  rendererTypeName: string;
125
134
  error: unknown;
126
- message: string | undefined;
127
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
135
+ statusMessage: string | undefined;
136
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
128
137
  }> | null;
129
138
  readonly adapterConfig: any;
130
- readonly parentTrack: any;
139
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
140
+ readonly parentDisplay: any;
141
+ readonly effectiveRpcDriverName: any;
142
+ } & {
131
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  renderProps(): any;
144
+ renderingProps(): {
145
+ displayModel: {
146
+ id: string;
147
+ type: string;
148
+ rpcDriverName: string | undefined;
149
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
150
+ rendererTypeName: string;
151
+ error: unknown;
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+ statusMessage: string | undefined;
153
+ } & {
154
+ readonly RenderingComponent: React.FC<{
155
+ model: {
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+ id: string;
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+ type: string;
158
+ rpcDriverName: string | undefined;
159
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
160
+ rendererTypeName: string;
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+ error: unknown;
162
+ statusMessage: string | undefined;
163
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
164
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
165
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
166
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
167
+ }, {
168
+ rendererTypeName: string;
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+ error: unknown;
170
+ statusMessage: string | undefined;
171
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
172
+ onHorizontalScroll?: () => void;
173
+ blockState?: Record<string, any>;
174
+ }>;
175
+ readonly DisplayBlurb: React.FC<{
176
+ model: {
177
+ id: string;
178
+ type: string;
179
+ rpcDriverName: string | undefined;
180
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
181
+ rendererTypeName: string;
182
+ error: unknown;
183
+ statusMessage: string | undefined;
184
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
185
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
186
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
187
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
188
+ }, {
189
+ rendererTypeName: string;
190
+ error: unknown;
191
+ statusMessage: string | undefined;
192
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
193
+ }> | null;
194
+ readonly adapterConfig: any;
195
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
196
+ readonly parentDisplay: any;
197
+ readonly effectiveRpcDriverName: any;
198
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
199
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
200
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
201
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
202
+ }, {
203
+ rendererTypeName: string;
204
+ error: unknown;
205
+ statusMessage: string | undefined;
206
+ } & {
207
+ readonly RenderingComponent: React.FC<{
208
+ model: {
209
+ id: string;
210
+ type: string;
211
+ rpcDriverName: string | undefined;
212
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
213
+ rendererTypeName: string;
214
+ error: unknown;
215
+ statusMessage: string | undefined;
216
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
217
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
218
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
219
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
220
+ }, {
221
+ rendererTypeName: string;
222
+ error: unknown;
223
+ statusMessage: string | undefined;
224
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
225
+ onHorizontalScroll?: () => void;
226
+ blockState?: Record<string, any>;
227
+ }>;
228
+ readonly DisplayBlurb: React.FC<{
229
+ model: {
230
+ id: string;
231
+ type: string;
232
+ rpcDriverName: string | undefined;
233
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
234
+ rendererTypeName: string;
235
+ error: unknown;
236
+ statusMessage: string | undefined;
237
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
238
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
239
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
240
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
241
+ }, {
242
+ rendererTypeName: string;
243
+ error: unknown;
244
+ statusMessage: string | undefined;
245
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
246
+ }> | null;
247
+ readonly adapterConfig: any;
248
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
249
+ readonly parentDisplay: any;
250
+ readonly effectiveRpcDriverName: any;
251
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
252
+ };
132
253
  readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
133
254
  readonly DisplayMessageComponent: undefined | React.FC<any>;
134
255
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
135
256
  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
136
257
  regionCannotBeRendered(): null;
137
258
  } & {
138
- setMessage(arg?: string): void;
259
+ setStatusMessage(arg?: string): void;
139
260
  setError(error?: unknown): void;
140
261
  setRpcDriverName(rpcDriverName: string): void;
141
262
  reload(): void;
@@ -170,12 +291,13 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
170
291
  readonly regionTooLarge: boolean;
171
292
  readonly regionTooLargeReason: string;
172
293
  } & {
173
- readonly statsReadyAndRegionNotTooLarge: boolean;
294
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
174
295
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
175
296
  regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
176
297
  } & {
177
298
  mouseoverExtraInformation: string | undefined;
178
299
  featureIdUnderMouse: undefined | string;
300
+ subfeatureIdUnderMouse: undefined | string;
179
301
  contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
180
302
  } & {
181
303
  readonly DisplayMessageComponent: undefined | React.FC<any>;
@@ -184,27 +306,23 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
184
306
  } & {
185
307
  readonly renderDelay: number;
186
308
  readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
309
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
310
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
187
311
  readonly selectedFeatureId: string | undefined;
188
- copyInfoToClipboard(feature: import("@jbrowse/core/util").Feature): void;
312
+ readonly featureWidgetType: {
313
+ type: string;
314
+ id: string;
315
+ };
189
316
  } & {
317
+ readonly showTooltipsEnabled: boolean;
190
318
  readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
191
319
  readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
192
- readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, [number, number, number, number] | [number, number, number, number, {
193
- label?: string;
194
- description?: string;
195
- refName: string;
196
- }]>;
320
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
321
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord>;
197
322
  getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
198
- getFeatureByID(blockKey: string, id: string): ([number, number, number, number] | [number, number, number, number, {
199
- label?: string;
200
- description?: string;
201
- refName: string;
202
- }]) | undefined;
203
- searchFeatureByID(id: string): ([number, number, number, number] | [number, number, number, number, {
204
- label?: string;
205
- description?: string;
206
- refName: string;
207
- }]) | undefined;
323
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
324
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
325
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util").FeatureLabelData>;
208
326
  } & {
209
327
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
210
328
  deleteBlock(key: string): void;
@@ -212,13 +330,746 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
212
330
  navToFeature(feature: import("@jbrowse/core/util").Feature): void;
213
331
  clearFeatureSelection(): void;
214
332
  setFeatureIdUnderMouse(feature?: string): void;
333
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
215
334
  setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
216
335
  setMouseoverExtraInformation(extra?: string): void;
336
+ setShowLegend(s: boolean): void;
337
+ setShowTooltips(arg: boolean): void;
217
338
  } & {
218
339
  reload(): Promise<void>;
340
+ } & {
341
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
342
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
219
343
  } & {
220
344
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
221
345
  contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
346
+ renderingProps(): {
347
+ displayModel: {
348
+ id: string;
349
+ type: string;
350
+ rpcDriverName: string | undefined;
351
+ heightPreConfig: number | undefined;
352
+ userBpPerPxLimit: number | undefined;
353
+ userByteSizeLimit: number | undefined;
354
+ blockState: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
355
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
356
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
357
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
358
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
359
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
360
+ }, {
361
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
362
+ filled: boolean;
363
+ reactElement: React.ReactElement | undefined;
364
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
365
+ layout: any;
366
+ blockStatusMessage: string;
367
+ error: unknown;
368
+ message: string | undefined;
369
+ maxHeightReached: boolean;
370
+ ReactComponent: ({ model, }: {
371
+ model: {
372
+ error?: unknown;
373
+ reload: () => void;
374
+ message?: React.ReactNode;
375
+ statusMessage?: string;
376
+ reactElement?: React.ReactElement;
377
+ isRenderingPending?: boolean;
378
+ };
379
+ }) => import("react/jsx-runtime").JSX.Element;
380
+ renderProps: any;
381
+ renderArgs: Record<string, unknown> | undefined;
382
+ isRenderingPending: boolean;
383
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
384
+ } & {
385
+ doReload(): void;
386
+ setStatusMessage(message: string): void;
387
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
388
+ setMessage(messageText: string): void;
389
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
390
+ setError(error: unknown): void;
391
+ reload(): void;
392
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
393
+ beforeDestroy(): void;
394
+ } & {
395
+ readonly statusMessage: any;
396
+ } & {
397
+ afterAttach(): void;
398
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
399
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
400
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
401
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
402
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
403
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
404
+ }, {
405
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
406
+ filled: boolean;
407
+ reactElement: React.ReactElement | undefined;
408
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
409
+ layout: any;
410
+ blockStatusMessage: string;
411
+ error: unknown;
412
+ message: string | undefined;
413
+ maxHeightReached: boolean;
414
+ ReactComponent: ({ model, }: {
415
+ model: {
416
+ error?: unknown;
417
+ reload: () => void;
418
+ message?: React.ReactNode;
419
+ statusMessage?: string;
420
+ reactElement?: React.ReactElement;
421
+ isRenderingPending?: boolean;
422
+ };
423
+ }) => import("react/jsx-runtime").JSX.Element;
424
+ renderProps: any;
425
+ renderArgs: Record<string, unknown> | undefined;
426
+ isRenderingPending: boolean;
427
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
428
+ } & {
429
+ doReload(): void;
430
+ setStatusMessage(message: string): void;
431
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
432
+ setMessage(messageText: string): void;
433
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
434
+ setError(error: unknown): void;
435
+ reload(): void;
436
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
437
+ beforeDestroy(): void;
438
+ } & {
439
+ readonly statusMessage: any;
440
+ } & {
441
+ afterAttach(): void;
442
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
443
+ configuration: {
444
+ [x: string]: any;
445
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
446
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
447
+ [x: string]: any;
448
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
449
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
450
+ [x: string]: any;
451
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
452
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
453
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
454
+ maxFeatureScreenDensity: {
455
+ type: string;
456
+ description: string;
457
+ defaultValue: number;
458
+ };
459
+ fetchSizeLimit: {
460
+ type: string;
461
+ defaultValue: number;
462
+ description: string;
463
+ };
464
+ height: {
465
+ type: string;
466
+ defaultValue: number;
467
+ description: string;
468
+ };
469
+ mouseover: {
470
+ type: string;
471
+ description: string;
472
+ defaultValue: string;
473
+ contextVariable: string[];
474
+ };
475
+ jexlFilters: {
476
+ type: string;
477
+ description: string;
478
+ defaultValue: never[];
479
+ };
480
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>>;
481
+ showLegend: boolean | undefined;
482
+ showTooltips: boolean | undefined;
483
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
484
+ rendererTypeName: string;
485
+ error: unknown;
486
+ statusMessage: string | undefined;
487
+ } & {
488
+ readonly RenderingComponent: React.FC<{
489
+ model: {
490
+ id: string;
491
+ type: string;
492
+ rpcDriverName: string | undefined;
493
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
494
+ rendererTypeName: string;
495
+ error: unknown;
496
+ statusMessage: string | undefined;
497
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
498
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
499
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
500
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
501
+ }, {
502
+ rendererTypeName: string;
503
+ error: unknown;
504
+ statusMessage: string | undefined;
505
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
506
+ onHorizontalScroll?: () => void;
507
+ blockState?: Record<string, any>;
508
+ }>;
509
+ readonly DisplayBlurb: React.FC<{
510
+ model: {
511
+ id: string;
512
+ type: string;
513
+ rpcDriverName: string | undefined;
514
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
515
+ rendererTypeName: string;
516
+ error: unknown;
517
+ statusMessage: string | undefined;
518
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
519
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
520
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
521
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
522
+ }, {
523
+ rendererTypeName: string;
524
+ error: unknown;
525
+ statusMessage: string | undefined;
526
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
527
+ }> | null;
528
+ readonly adapterConfig: any;
529
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
530
+ readonly parentDisplay: any;
531
+ readonly effectiveRpcDriverName: any;
532
+ } & {
533
+ renderProps(): any;
534
+ renderingProps(): {
535
+ displayModel: {
536
+ id: string;
537
+ type: string;
538
+ rpcDriverName: string | undefined;
539
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
540
+ rendererTypeName: string;
541
+ error: unknown;
542
+ statusMessage: string | undefined;
543
+ } & {
544
+ readonly RenderingComponent: React.FC<{
545
+ model: {
546
+ id: string;
547
+ type: string;
548
+ rpcDriverName: string | undefined;
549
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
550
+ rendererTypeName: string;
551
+ error: unknown;
552
+ statusMessage: string | undefined;
553
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
554
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
555
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
556
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
557
+ }, {
558
+ rendererTypeName: string;
559
+ error: unknown;
560
+ statusMessage: string | undefined;
561
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
562
+ onHorizontalScroll?: () => void;
563
+ blockState?: Record<string, any>;
564
+ }>;
565
+ readonly DisplayBlurb: React.FC<{
566
+ model: {
567
+ id: string;
568
+ type: string;
569
+ rpcDriverName: string | undefined;
570
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
571
+ rendererTypeName: string;
572
+ error: unknown;
573
+ statusMessage: string | undefined;
574
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
575
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
576
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
577
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
578
+ }, {
579
+ rendererTypeName: string;
580
+ error: unknown;
581
+ statusMessage: string | undefined;
582
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
583
+ }> | null;
584
+ readonly adapterConfig: any;
585
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
586
+ readonly parentDisplay: any;
587
+ readonly effectiveRpcDriverName: any;
588
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
589
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
590
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
591
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
592
+ }, {
593
+ rendererTypeName: string;
594
+ error: unknown;
595
+ statusMessage: string | undefined;
596
+ } & {
597
+ readonly RenderingComponent: React.FC<{
598
+ model: {
599
+ id: string;
600
+ type: string;
601
+ rpcDriverName: string | undefined;
602
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
603
+ rendererTypeName: string;
604
+ error: unknown;
605
+ statusMessage: string | undefined;
606
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
607
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
608
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
609
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
610
+ }, {
611
+ rendererTypeName: string;
612
+ error: unknown;
613
+ statusMessage: string | undefined;
614
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
615
+ onHorizontalScroll?: () => void;
616
+ blockState?: Record<string, any>;
617
+ }>;
618
+ readonly DisplayBlurb: React.FC<{
619
+ model: {
620
+ id: string;
621
+ type: string;
622
+ rpcDriverName: string | undefined;
623
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
624
+ rendererTypeName: string;
625
+ error: unknown;
626
+ statusMessage: string | undefined;
627
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
628
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
629
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
630
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
631
+ }, {
632
+ rendererTypeName: string;
633
+ error: unknown;
634
+ statusMessage: string | undefined;
635
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
636
+ }> | null;
637
+ readonly adapterConfig: any;
638
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
639
+ readonly parentDisplay: any;
640
+ readonly effectiveRpcDriverName: any;
641
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
642
+ };
643
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
644
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
645
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
646
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
647
+ regionCannotBeRendered(): null;
648
+ } & {
649
+ setStatusMessage(arg?: string): void;
650
+ setError(error?: unknown): void;
651
+ setRpcDriverName(rpcDriverName: string): void;
652
+ reload(): void;
653
+ } & {
654
+ scrollTop: number;
655
+ } & {
656
+ readonly height: number;
657
+ } & {
658
+ setScrollTop(scrollTop: number): void;
659
+ setHeight(displayHeight: number): number;
660
+ resizeHeight(distance: number): number;
661
+ } & {
662
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
663
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
664
+ currStatsBpPerPx: number;
665
+ } & {
666
+ readonly currentBytesRequested: number;
667
+ readonly currentFeatureScreenDensity: number;
668
+ readonly maxFeatureScreenDensity: any;
669
+ readonly featureDensityStatsReady: boolean;
670
+ readonly maxAllowableBytes: number;
671
+ } & {
672
+ afterAttach(): void;
673
+ } & {
674
+ setCurrStatsBpPerPx(n: number): void;
675
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
676
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
677
+ setFeatureDensityStatsP(arg: any): void;
678
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
679
+ clearFeatureDensityStats(): void;
680
+ } & {
681
+ readonly regionTooLarge: boolean;
682
+ readonly regionTooLargeReason: string;
683
+ } & {
684
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
685
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
686
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
687
+ } & {
688
+ mouseoverExtraInformation: string | undefined;
689
+ featureIdUnderMouse: undefined | string;
690
+ subfeatureIdUnderMouse: undefined | string;
691
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
692
+ } & {
693
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
694
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
695
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
696
+ } & {
697
+ readonly renderDelay: number;
698
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
699
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
700
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
701
+ readonly selectedFeatureId: string | undefined;
702
+ readonly featureWidgetType: {
703
+ type: string;
704
+ id: string;
705
+ };
706
+ } & {
707
+ readonly showTooltipsEnabled: boolean;
708
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
709
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
710
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
711
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord>;
712
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
713
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
714
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
715
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util").FeatureLabelData>;
716
+ } & {
717
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
718
+ deleteBlock(key: string): void;
719
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
720
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
721
+ clearFeatureSelection(): void;
722
+ setFeatureIdUnderMouse(feature?: string): void;
723
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
724
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
725
+ setMouseoverExtraInformation(extra?: string): void;
726
+ setShowLegend(s: boolean): void;
727
+ setShowTooltips(arg: boolean): void;
728
+ } & {
729
+ reload(): Promise<void>;
730
+ } & {
731
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
732
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
733
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
734
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
735
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
736
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
737
+ } & {
738
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
739
+ } & {
740
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
741
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
742
+ } & {
743
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
744
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
745
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
746
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
747
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
748
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
749
+ }, {
750
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
751
+ filled: boolean;
752
+ reactElement: React.ReactElement | undefined;
753
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
754
+ layout: any;
755
+ blockStatusMessage: string;
756
+ error: unknown;
757
+ message: string | undefined;
758
+ maxHeightReached: boolean;
759
+ ReactComponent: ({ model, }: {
760
+ model: {
761
+ error?: unknown;
762
+ reload: () => void;
763
+ message?: React.ReactNode;
764
+ statusMessage?: string;
765
+ reactElement?: React.ReactElement;
766
+ isRenderingPending?: boolean;
767
+ };
768
+ }) => import("react/jsx-runtime").JSX.Element;
769
+ renderProps: any;
770
+ renderArgs: Record<string, unknown> | undefined;
771
+ isRenderingPending: boolean;
772
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
773
+ } & {
774
+ doReload(): void;
775
+ setStatusMessage(message: string): void;
776
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
777
+ setMessage(messageText: string): void;
778
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
779
+ setError(error: unknown): void;
780
+ reload(): void;
781
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
782
+ beforeDestroy(): void;
783
+ } & {
784
+ readonly statusMessage: any;
785
+ } & {
786
+ afterAttach(): void;
787
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
788
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
789
+ maxFeatureScreenDensity: {
790
+ type: string;
791
+ description: string;
792
+ defaultValue: number;
793
+ };
794
+ fetchSizeLimit: {
795
+ type: string;
796
+ defaultValue: number;
797
+ description: string;
798
+ };
799
+ height: {
800
+ type: string;
801
+ defaultValue: number;
802
+ description: string;
803
+ };
804
+ mouseover: {
805
+ type: string;
806
+ description: string;
807
+ defaultValue: string;
808
+ contextVariable: string[];
809
+ };
810
+ jexlFilters: {
811
+ type: string;
812
+ description: string;
813
+ defaultValue: never[];
814
+ };
815
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
816
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
817
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
818
+ }, {
819
+ rendererTypeName: string;
820
+ error: unknown;
821
+ statusMessage: string | undefined;
822
+ } & {
823
+ readonly RenderingComponent: React.FC<{
824
+ model: {
825
+ id: string;
826
+ type: string;
827
+ rpcDriverName: string | undefined;
828
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
829
+ rendererTypeName: string;
830
+ error: unknown;
831
+ statusMessage: string | undefined;
832
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
833
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
834
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
835
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
836
+ }, {
837
+ rendererTypeName: string;
838
+ error: unknown;
839
+ statusMessage: string | undefined;
840
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
841
+ onHorizontalScroll?: () => void;
842
+ blockState?: Record<string, any>;
843
+ }>;
844
+ readonly DisplayBlurb: React.FC<{
845
+ model: {
846
+ id: string;
847
+ type: string;
848
+ rpcDriverName: string | undefined;
849
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
850
+ rendererTypeName: string;
851
+ error: unknown;
852
+ statusMessage: string | undefined;
853
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
854
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
855
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
856
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
857
+ }, {
858
+ rendererTypeName: string;
859
+ error: unknown;
860
+ statusMessage: string | undefined;
861
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
862
+ }> | null;
863
+ readonly adapterConfig: any;
864
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
865
+ readonly parentDisplay: any;
866
+ readonly effectiveRpcDriverName: any;
867
+ } & {
868
+ renderProps(): any;
869
+ renderingProps(): {
870
+ displayModel: {
871
+ id: string;
872
+ type: string;
873
+ rpcDriverName: string | undefined;
874
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
875
+ rendererTypeName: string;
876
+ error: unknown;
877
+ statusMessage: string | undefined;
878
+ } & {
879
+ readonly RenderingComponent: React.FC<{
880
+ model: {
881
+ id: string;
882
+ type: string;
883
+ rpcDriverName: string | undefined;
884
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
885
+ rendererTypeName: string;
886
+ error: unknown;
887
+ statusMessage: string | undefined;
888
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
889
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
890
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
891
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
892
+ }, {
893
+ rendererTypeName: string;
894
+ error: unknown;
895
+ statusMessage: string | undefined;
896
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
897
+ onHorizontalScroll?: () => void;
898
+ blockState?: Record<string, any>;
899
+ }>;
900
+ readonly DisplayBlurb: React.FC<{
901
+ model: {
902
+ id: string;
903
+ type: string;
904
+ rpcDriverName: string | undefined;
905
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
906
+ rendererTypeName: string;
907
+ error: unknown;
908
+ statusMessage: string | undefined;
909
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
910
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
911
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
912
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
913
+ }, {
914
+ rendererTypeName: string;
915
+ error: unknown;
916
+ statusMessage: string | undefined;
917
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
918
+ }> | null;
919
+ readonly adapterConfig: any;
920
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
921
+ readonly parentDisplay: any;
922
+ readonly effectiveRpcDriverName: any;
923
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
924
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
925
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
926
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
927
+ }, {
928
+ rendererTypeName: string;
929
+ error: unknown;
930
+ statusMessage: string | undefined;
931
+ } & {
932
+ readonly RenderingComponent: React.FC<{
933
+ model: {
934
+ id: string;
935
+ type: string;
936
+ rpcDriverName: string | undefined;
937
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
938
+ rendererTypeName: string;
939
+ error: unknown;
940
+ statusMessage: string | undefined;
941
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
942
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
943
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
944
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
945
+ }, {
946
+ rendererTypeName: string;
947
+ error: unknown;
948
+ statusMessage: string | undefined;
949
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
950
+ onHorizontalScroll?: () => void;
951
+ blockState?: Record<string, any>;
952
+ }>;
953
+ readonly DisplayBlurb: React.FC<{
954
+ model: {
955
+ id: string;
956
+ type: string;
957
+ rpcDriverName: string | undefined;
958
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
959
+ rendererTypeName: string;
960
+ error: unknown;
961
+ statusMessage: string | undefined;
962
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
963
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
964
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
965
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
966
+ }, {
967
+ rendererTypeName: string;
968
+ error: unknown;
969
+ statusMessage: string | undefined;
970
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
971
+ }> | null;
972
+ readonly adapterConfig: any;
973
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
974
+ readonly parentDisplay: any;
975
+ readonly effectiveRpcDriverName: any;
976
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
977
+ };
978
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
979
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
980
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
981
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
982
+ regionCannotBeRendered(): null;
983
+ } & {
984
+ setStatusMessage(arg?: string): void;
985
+ setError(error?: unknown): void;
986
+ setRpcDriverName(rpcDriverName: string): void;
987
+ reload(): void;
988
+ } & {
989
+ scrollTop: number;
990
+ } & {
991
+ readonly height: number;
992
+ } & {
993
+ setScrollTop(scrollTop: number): void;
994
+ setHeight(displayHeight: number): number;
995
+ resizeHeight(distance: number): number;
996
+ } & {
997
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
998
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
999
+ currStatsBpPerPx: number;
1000
+ } & {
1001
+ readonly currentBytesRequested: number;
1002
+ readonly currentFeatureScreenDensity: number;
1003
+ readonly maxFeatureScreenDensity: any;
1004
+ readonly featureDensityStatsReady: boolean;
1005
+ readonly maxAllowableBytes: number;
1006
+ } & {
1007
+ afterAttach(): void;
1008
+ } & {
1009
+ setCurrStatsBpPerPx(n: number): void;
1010
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1011
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
1012
+ setFeatureDensityStatsP(arg: any): void;
1013
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1014
+ clearFeatureDensityStats(): void;
1015
+ } & {
1016
+ readonly regionTooLarge: boolean;
1017
+ readonly regionTooLargeReason: string;
1018
+ } & {
1019
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
1020
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
1021
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
1022
+ } & {
1023
+ mouseoverExtraInformation: string | undefined;
1024
+ featureIdUnderMouse: undefined | string;
1025
+ subfeatureIdUnderMouse: undefined | string;
1026
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
1027
+ } & {
1028
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
1029
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
1030
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
1031
+ } & {
1032
+ readonly renderDelay: number;
1033
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
1034
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
1035
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
1036
+ readonly selectedFeatureId: string | undefined;
1037
+ readonly featureWidgetType: {
1038
+ type: string;
1039
+ id: string;
1040
+ };
1041
+ } & {
1042
+ readonly showTooltipsEnabled: boolean;
1043
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
1044
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
1045
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
1046
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord>;
1047
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
1048
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
1049
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
1050
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util").FeatureLabelData>;
1051
+ } & {
1052
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
1053
+ deleteBlock(key: string): void;
1054
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
1055
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
1056
+ clearFeatureSelection(): void;
1057
+ setFeatureIdUnderMouse(feature?: string): void;
1058
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
1059
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
1060
+ setMouseoverExtraInformation(extra?: string): void;
1061
+ setShowLegend(s: boolean): void;
1062
+ setShowTooltips(arg: boolean): void;
1063
+ } & {
1064
+ reload(): Promise<void>;
1065
+ } & {
1066
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1067
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1068
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1069
+ onMouseMove(_: unknown, featureId?: string): void;
1070
+ onMouseLeave(_: unknown): void;
1071
+ onContextMenu(_: unknown): void;
1072
+ };
222
1073
  renderProps(): any;
223
1074
  } & {
224
1075
  renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
@@ -251,29 +1102,29 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
251
1102
  }[];
252
1103
  }, {
253
1104
  type: string;
254
- } & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
255
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
256
- type: import("mobx-state-tree").ISimpleType<string>;
257
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
258
- } & {
259
- heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
260
- } & {
261
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
262
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
263
- } & {
264
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
265
- key: import("mobx-state-tree").ISimpleType<string>;
266
- region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
267
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
268
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
269
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1105
+ } & Partial<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
1106
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1107
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1108
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1109
+ } & {
1110
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
1111
+ } & {
1112
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
1113
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
1114
+ } & {
1115
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
1116
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1117
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
1118
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
1119
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1120
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
270
1121
  }, {
271
- stopToken: string | undefined;
1122
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
272
1123
  filled: boolean;
273
1124
  reactElement: React.ReactElement | undefined;
274
1125
  features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
275
1126
  layout: any;
276
- status: string;
1127
+ blockStatusMessage: string;
277
1128
  error: unknown;
278
1129
  message: string | undefined;
279
1130
  maxHeightReached: boolean;
@@ -281,25 +1132,117 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
281
1132
  model: {
282
1133
  error?: unknown;
283
1134
  reload: () => void;
284
- message: React.ReactNode;
285
- filled?: boolean;
286
- status?: string;
1135
+ message?: React.ReactNode;
1136
+ statusMessage?: string;
287
1137
  reactElement?: React.ReactElement;
1138
+ isRenderingPending?: boolean;
288
1139
  };
289
- }) => import("react/jsx-runtime").JSX.Element | undefined;
1140
+ }) => import("react/jsx-runtime").JSX.Element;
290
1141
  renderProps: any;
1142
+ renderArgs: Record<string, unknown> | undefined;
1143
+ isRenderingPending: boolean;
1144
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
291
1145
  } & {
292
1146
  doReload(): void;
1147
+ setStatusMessage(message: string): void;
1148
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
1149
+ setMessage(messageText: string): void;
1150
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
1151
+ setError(error: unknown): void;
1152
+ reload(): void;
1153
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
1154
+ beforeDestroy(): void;
1155
+ } & {
1156
+ readonly statusMessage: any;
1157
+ } & {
293
1158
  afterAttach(): void;
294
- setStatus(message: string): void;
295
- setLoading(newStopToken: string): void;
1159
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1160
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
1161
+ maxFeatureScreenDensity: {
1162
+ type: string;
1163
+ description: string;
1164
+ defaultValue: number;
1165
+ };
1166
+ fetchSizeLimit: {
1167
+ type: string;
1168
+ defaultValue: number;
1169
+ description: string;
1170
+ };
1171
+ height: {
1172
+ type: string;
1173
+ defaultValue: number;
1174
+ description: string;
1175
+ };
1176
+ mouseover: {
1177
+ type: string;
1178
+ description: string;
1179
+ defaultValue: string;
1180
+ contextVariable: string[];
1181
+ };
1182
+ jexlFilters: {
1183
+ type: string;
1184
+ description: string;
1185
+ defaultValue: never[];
1186
+ };
1187
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
1188
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1189
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1190
+ }>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
1191
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1192
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1193
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1194
+ } & {
1195
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
1196
+ } & {
1197
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
1198
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
1199
+ } & {
1200
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
1201
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1202
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
1203
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
1204
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1205
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1206
+ }, {
1207
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
1208
+ filled: boolean;
1209
+ reactElement: React.ReactElement | undefined;
1210
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
1211
+ layout: any;
1212
+ blockStatusMessage: string;
1213
+ error: unknown;
1214
+ message: string | undefined;
1215
+ maxHeightReached: boolean;
1216
+ ReactComponent: ({ model, }: {
1217
+ model: {
1218
+ error?: unknown;
1219
+ reload: () => void;
1220
+ message?: React.ReactNode;
1221
+ statusMessage?: string;
1222
+ reactElement?: React.ReactElement;
1223
+ isRenderingPending?: boolean;
1224
+ };
1225
+ }) => import("react/jsx-runtime").JSX.Element;
1226
+ renderProps: any;
1227
+ renderArgs: Record<string, unknown> | undefined;
1228
+ isRenderingPending: boolean;
1229
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
1230
+ } & {
1231
+ doReload(): void;
1232
+ setStatusMessage(message: string): void;
1233
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
296
1234
  setMessage(messageText: string): void;
297
1235
  setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
298
1236
  setError(error: unknown): void;
299
1237
  reload(): void;
1238
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
300
1239
  beforeDestroy(): void;
301
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
302
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
1240
+ } & {
1241
+ readonly statusMessage: any;
1242
+ } & {
1243
+ afterAttach(): void;
1244
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1245
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
303
1246
  maxFeatureScreenDensity: {
304
1247
  type: string;
305
1248
  description: string;
@@ -326,13 +1269,13 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
326
1269
  description: string;
327
1270
  defaultValue: never[];
328
1271
  };
329
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
330
- }>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
331
- type: string;
332
- id: string;
333
- configuration: import("mobx-state-tree").ModelSnapshotType<Record<string, any>>;
334
- rpcDriverName: string | undefined;
335
- heightPreConfig: number | undefined;
336
- userBpPerPxLimit: number | undefined;
337
- userByteSizeLimit: number | undefined;
338
- } & import("mobx-state-tree")._NotCustomized>;
1272
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
1273
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1274
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1275
+ } & {
1276
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearReferenceSequenceDisplay">;
1277
+ configuration: AnyConfigurationSchemaType;
1278
+ showForward: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1279
+ showReverse: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1280
+ showTranslation: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1281
+ }>>;