@jbrowse/plugin-sequence 3.4.0 → 3.5.1

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Files changed (5) hide show
  1. package/dist/IndexedFastaAdapter/IndexedFastaAdapter.js +8 -1
  2. package/dist/LinearReferenceSequenceDisplay/model.d.ts +2 -1
  3. package/esm/IndexedFastaAdapter/IndexedFastaAdapter.js +8 -1
  4. package/esm/LinearReferenceSequenceDisplay/model.d.ts +2 -1
  5. package/package.json +5 -5
package/dist/IndexedFastaAdapter/IndexedFastaAdapter.js CHANGED
@@ -79,7 +79,14 @@ class IndexedFastaAdapter extends BaseAdapter_1.BaseSequenceAdapter {
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  end: chunkStart + chunkSize,
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  };
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  (0, stopToken_1.checkStopToken)(stopToken);
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- chunks.push(await this.seqCache.get(JSON.stringify(r), { ...r, fasta }));
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+ const res = await this.seqCache.get(JSON.stringify(r), {
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+ ...r,
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+ fasta,
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+ });
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+ if (!res) {
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+ break;
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+ }
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+ chunks.push(res);
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  }
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  const seq = chunks
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  .filter(f => !!f)
package/dist/LinearReferenceSequenceDisplay/model.d.ts CHANGED
@@ -184,6 +184,7 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
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  readonly renderDelay: number;
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  readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
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  readonly selectedFeatureId: string | undefined;
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+ copyInfoToClipboard(feature: import("@jbrowse/core/util").Feature): void;
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  } & {
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  readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
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  readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
@@ -193,7 +194,7 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
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  } & {
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  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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  deleteBlock(key: string): void;
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- selectFeature(feature: import("@jbrowse/core/util").Feature): Promise<void>;
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+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
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  navToFeature(feature: import("@jbrowse/core/util").Feature): void;
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  clearFeatureSelection(): void;
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  setFeatureIdUnderMouse(feature?: string): void;
package/esm/IndexedFastaAdapter/IndexedFastaAdapter.js CHANGED
@@ -74,7 +74,14 @@ export default class IndexedFastaAdapter extends BaseSequenceAdapter {
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  end: chunkStart + chunkSize,
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  };
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  checkStopToken(stopToken);
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- chunks.push(await this.seqCache.get(JSON.stringify(r), { ...r, fasta }));
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+ const res = await this.seqCache.get(JSON.stringify(r), {
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+ ...r,
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+ fasta,
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+ });
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+ if (!res) {
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+ break;
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+ }
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+ chunks.push(res);
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  }
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  const seq = chunks
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  .filter(f => !!f)
package/esm/LinearReferenceSequenceDisplay/model.d.ts CHANGED
@@ -184,6 +184,7 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
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  readonly renderDelay: number;
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  readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
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  readonly selectedFeatureId: string | undefined;
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+ copyInfoToClipboard(feature: import("@jbrowse/core/util").Feature): void;
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  } & {
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  readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
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  readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
@@ -193,7 +194,7 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
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  } & {
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  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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  deleteBlock(key: string): void;
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- selectFeature(feature: import("@jbrowse/core/util").Feature): Promise<void>;
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+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
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  navToFeature(feature: import("@jbrowse/core/util").Feature): void;
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  clearFeatureSelection(): void;
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  setFeatureIdUnderMouse(feature?: string): void;
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@jbrowse/plugin-sequence",
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- "version": "3.4.0",
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+ "version": "3.5.1",
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  "description": "JBrowse 2 sequence adapters, tracks, etc.",
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  "keywords": [
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  "jbrowse",
@@ -39,9 +39,9 @@
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  "@gmod/abortable-promise-cache": "^3.0.1",
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  "@gmod/indexedfasta": "^4.0.0",
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  "@gmod/twobit": "^6.0.0",
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- "@jbrowse/core": "^3.4.0",
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- "@jbrowse/plugin-linear-genome-view": "^3.4.0",
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- "@jbrowse/plugin-wiggle": "^3.4.0",
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+ "@jbrowse/core": "^3.5.1",
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+ "@jbrowse/plugin-linear-genome-view": "^3.5.1",
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+ "@jbrowse/plugin-wiggle": "^3.5.1",
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  "@mui/material": "^7.0.0",
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  "mobx": "^6.0.0",
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  "mobx-react": "^9.0.0",
@@ -57,5 +57,5 @@
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  "distModule": "esm/index.js",
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  "srcModule": "src/index.ts",
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  "module": "esm/index.js",
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- "gitHead": "a9f1ac35fc2dd810bae92cdaf1fc19995bee4413"
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+ "gitHead": "cb8859da9d838ad2594964777c5c54f385d98f5e"
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  }