@jbrowse/plugin-sequence 3.2.0 → 3.4.0

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Files changed (23) hide show
  1. package/dist/ChromSizesAdapter/ChromSizesAdapter.d.ts +0 -1
  2. package/dist/ChromSizesAdapter/ChromSizesAdapter.js +0 -1
  3. package/dist/IndexedFastaAdapter/IndexedFastaAdapter.d.ts +0 -1
  4. package/dist/IndexedFastaAdapter/IndexedFastaAdapter.js +0 -1
  5. package/dist/LinearReferenceSequenceDisplay/model.d.ts +1 -1
  6. package/dist/SequenceSearchAdapter/SequenceSearchAdapter.d.ts +0 -1
  7. package/dist/SequenceSearchAdapter/SequenceSearchAdapter.js +0 -1
  8. package/dist/TwoBitAdapter/TwoBitAdapter.d.ts +0 -1
  9. package/dist/TwoBitAdapter/TwoBitAdapter.js +0 -1
  10. package/dist/UnindexedFastaAdapter/UnindexedFastaAdapter.d.ts +0 -1
  11. package/dist/UnindexedFastaAdapter/UnindexedFastaAdapter.js +0 -1
  12. package/esm/ChromSizesAdapter/ChromSizesAdapter.d.ts +0 -1
  13. package/esm/ChromSizesAdapter/ChromSizesAdapter.js +0 -1
  14. package/esm/IndexedFastaAdapter/IndexedFastaAdapter.d.ts +0 -1
  15. package/esm/IndexedFastaAdapter/IndexedFastaAdapter.js +0 -1
  16. package/esm/LinearReferenceSequenceDisplay/model.d.ts +1 -1
  17. package/esm/SequenceSearchAdapter/SequenceSearchAdapter.d.ts +0 -1
  18. package/esm/SequenceSearchAdapter/SequenceSearchAdapter.js +0 -1
  19. package/esm/TwoBitAdapter/TwoBitAdapter.d.ts +0 -1
  20. package/esm/TwoBitAdapter/TwoBitAdapter.js +0 -1
  21. package/esm/UnindexedFastaAdapter/UnindexedFastaAdapter.d.ts +0 -1
  22. package/esm/UnindexedFastaAdapter/UnindexedFastaAdapter.js +0 -1
  23. package/package.json +9 -9
package/dist/ChromSizesAdapter/ChromSizesAdapter.d.ts CHANGED
@@ -12,5 +12,4 @@ export default class ChromSizesAdapter extends BaseAdapter implements RegionsAda
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  end: number;
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  }[]>;
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  getHeader(): {};
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- freeResources(): void;
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  }
package/dist/ChromSizesAdapter/ChromSizesAdapter.js CHANGED
@@ -36,6 +36,5 @@ class ChromSizesAdapter extends BaseAdapter_1.BaseAdapter {
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  getHeader() {
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  return {};
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  }
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- freeResources() { }
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  }
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  exports.default = ChromSizesAdapter;
package/dist/IndexedFastaAdapter/IndexedFastaAdapter.d.ts CHANGED
@@ -22,5 +22,4 @@ export default class IndexedFastaAdapter extends BaseSequenceAdapter {
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  fasta: IndexedFasta;
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  }>;
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  getFeatures(region: NoAssemblyRegion, opts?: BaseOptions): import("rxjs").Observable<Feature>;
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- freeResources(): void;
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  }
package/dist/IndexedFastaAdapter/IndexedFastaAdapter.js CHANGED
@@ -101,6 +101,5 @@ class IndexedFastaAdapter extends BaseAdapter_1.BaseSequenceAdapter {
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  observer.complete();
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  });
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  }
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- freeResources() { }
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  }
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  exports.default = IndexedFastaAdapter;
package/dist/LinearReferenceSequenceDisplay/model.d.ts CHANGED
@@ -193,7 +193,7 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
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  } & {
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  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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  deleteBlock(key: string): void;
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- selectFeature(feature: import("@jbrowse/core/util").Feature): void;
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+ selectFeature(feature: import("@jbrowse/core/util").Feature): Promise<void>;
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  navToFeature(feature: import("@jbrowse/core/util").Feature): void;
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  clearFeatureSelection(): void;
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  setFeatureIdUnderMouse(feature?: string): void;
package/dist/SequenceSearchAdapter/SequenceSearchAdapter.d.ts CHANGED
@@ -5,5 +5,4 @@ export default class SequenceSearchAdapter extends BaseFeatureDataAdapter {
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  configure(): Promise<BaseFeatureDataAdapter>;
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  getRefNames(): Promise<string[]>;
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  getFeatures(query: Region, opts: BaseOptions): import("rxjs").Observable<Feature>;
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- freeResources(): void;
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  }
package/dist/SequenceSearchAdapter/SequenceSearchAdapter.js CHANGED
@@ -80,6 +80,5 @@ class SequenceSearchAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
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  observer.complete();
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  });
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  }
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- freeResources() { }
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  }
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  exports.default = SequenceSearchAdapter;
package/dist/TwoBitAdapter/TwoBitAdapter.d.ts CHANGED
@@ -25,5 +25,4 @@ export default class TwoBitAdapter extends BaseSequenceAdapter {
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  end: number;
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  }[]>;
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  getFeatures({ refName, start, end }: NoAssemblyRegion): import("rxjs").Observable<Feature>;
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- freeResources(): void;
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  }
package/dist/TwoBitAdapter/TwoBitAdapter.js CHANGED
@@ -81,6 +81,5 @@ class TwoBitAdapter extends BaseAdapter_1.BaseSequenceAdapter {
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  observer.complete();
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  });
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  }
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- freeResources() { }
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  }
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  exports.default = TwoBitAdapter;
package/dist/UnindexedFastaAdapter/UnindexedFastaAdapter.d.ts CHANGED
@@ -27,6 +27,5 @@ export default class UnindexedFastaAdapter extends BaseSequenceAdapter {
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  fasta: ReturnType<typeof parseSmallFasta>;
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  }>;
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  getFeatures(region: NoAssemblyRegion, opts?: BaseOptions): import("rxjs").Observable<Feature>;
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- freeResources(): void;
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  }
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  export {};
package/dist/UnindexedFastaAdapter/UnindexedFastaAdapter.js CHANGED
@@ -82,6 +82,5 @@ class UnindexedFastaAdapter extends BaseAdapter_1.BaseSequenceAdapter {
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  observer.complete();
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  });
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  }
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- freeResources() { }
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  }
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  exports.default = UnindexedFastaAdapter;
package/esm/ChromSizesAdapter/ChromSizesAdapter.d.ts CHANGED
@@ -12,5 +12,4 @@ export default class ChromSizesAdapter extends BaseAdapter implements RegionsAda
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  end: number;
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  }[]>;
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  getHeader(): {};
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- freeResources(): void;
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  }
package/esm/ChromSizesAdapter/ChromSizesAdapter.js CHANGED
@@ -34,5 +34,4 @@ export default class ChromSizesAdapter extends BaseAdapter {
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  getHeader() {
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  return {};
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  }
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- freeResources() { }
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  }
package/esm/IndexedFastaAdapter/IndexedFastaAdapter.d.ts CHANGED
@@ -22,5 +22,4 @@ export default class IndexedFastaAdapter extends BaseSequenceAdapter {
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  fasta: IndexedFasta;
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  }>;
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  getFeatures(region: NoAssemblyRegion, opts?: BaseOptions): import("rxjs").Observable<Feature>;
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- freeResources(): void;
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  }
package/esm/IndexedFastaAdapter/IndexedFastaAdapter.js CHANGED
@@ -96,5 +96,4 @@ export default class IndexedFastaAdapter extends BaseSequenceAdapter {
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  observer.complete();
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  });
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  }
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- freeResources() { }
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  }
package/esm/LinearReferenceSequenceDisplay/model.d.ts CHANGED
@@ -193,7 +193,7 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
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  } & {
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  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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  deleteBlock(key: string): void;
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- selectFeature(feature: import("@jbrowse/core/util").Feature): void;
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+ selectFeature(feature: import("@jbrowse/core/util").Feature): Promise<void>;
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  navToFeature(feature: import("@jbrowse/core/util").Feature): void;
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  clearFeatureSelection(): void;
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  setFeatureIdUnderMouse(feature?: string): void;
package/esm/SequenceSearchAdapter/SequenceSearchAdapter.d.ts CHANGED
@@ -5,5 +5,4 @@ export default class SequenceSearchAdapter extends BaseFeatureDataAdapter {
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  configure(): Promise<BaseFeatureDataAdapter>;
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  getRefNames(): Promise<string[]>;
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  getFeatures(query: Region, opts: BaseOptions): import("rxjs").Observable<Feature>;
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- freeResources(): void;
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  }
package/esm/SequenceSearchAdapter/SequenceSearchAdapter.js CHANGED
@@ -78,5 +78,4 @@ export default class SequenceSearchAdapter extends BaseFeatureDataAdapter {
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  observer.complete();
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  });
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  }
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- freeResources() { }
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  }
package/esm/TwoBitAdapter/TwoBitAdapter.d.ts CHANGED
@@ -25,5 +25,4 @@ export default class TwoBitAdapter extends BaseSequenceAdapter {
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  end: number;
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  }[]>;
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  getFeatures({ refName, start, end }: NoAssemblyRegion): import("rxjs").Observable<Feature>;
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- freeResources(): void;
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  }
package/esm/TwoBitAdapter/TwoBitAdapter.js CHANGED
@@ -76,5 +76,4 @@ export default class TwoBitAdapter extends BaseSequenceAdapter {
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  observer.complete();
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  });
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  }
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- freeResources() { }
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  }
package/esm/UnindexedFastaAdapter/UnindexedFastaAdapter.d.ts CHANGED
@@ -27,6 +27,5 @@ export default class UnindexedFastaAdapter extends BaseSequenceAdapter {
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  fasta: ReturnType<typeof parseSmallFasta>;
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  }>;
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  getFeatures(region: NoAssemblyRegion, opts?: BaseOptions): import("rxjs").Observable<Feature>;
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- freeResources(): void;
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  }
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  export {};
package/esm/UnindexedFastaAdapter/UnindexedFastaAdapter.js CHANGED
@@ -80,5 +80,4 @@ export default class UnindexedFastaAdapter extends BaseSequenceAdapter {
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  observer.complete();
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  });
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  }
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- freeResources() { }
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  }
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@jbrowse/plugin-sequence",
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- "version": "3.2.0",
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+ "version": "3.4.0",
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  "description": "JBrowse 2 sequence adapters, tracks, etc.",
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  "keywords": [
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  "jbrowse",
@@ -36,13 +36,13 @@
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  "clean": "rimraf dist esm *.tsbuildinfo"
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  },
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  "dependencies": {
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- "@gmod/abortable-promise-cache": "^2.0.0",
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- "@gmod/indexedfasta": "^3.0.0",
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- "@gmod/twobit": "^4.0.1",
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- "@jbrowse/core": "^3.2.0",
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- "@jbrowse/plugin-linear-genome-view": "^3.2.0",
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- "@jbrowse/plugin-wiggle": "^3.2.0",
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- "@mui/material": "^6.0.0",
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+ "@gmod/abortable-promise-cache": "^3.0.1",
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+ "@gmod/indexedfasta": "^4.0.0",
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+ "@gmod/twobit": "^6.0.0",
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+ "@jbrowse/core": "^3.4.0",
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+ "@jbrowse/plugin-linear-genome-view": "^3.4.0",
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+ "@jbrowse/plugin-wiggle": "^3.4.0",
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+ "@mui/material": "^7.0.0",
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  "mobx": "^6.0.0",
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  "mobx-react": "^9.0.0",
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  "mobx-state-tree": "^5.0.0",
@@ -57,5 +57,5 @@
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  "distModule": "esm/index.js",
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  "srcModule": "src/index.ts",
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  "module": "esm/index.js",
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- "gitHead": "c750e3f56706a490c19ba75abd807fec5e38aebf"
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+ "gitHead": "a9f1ac35fc2dd810bae92cdaf1fc19995bee4413"
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  }