@jbrowse/plugin-sequence 2.3.3 → 2.3.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (8) hide show
  1. package/dist/LinearReferenceSequenceDisplay/model.d.ts +1 -3
  2. package/dist/LinearReferenceSequenceDisplay/model.js +13 -5
  3. package/dist/LinearReferenceSequenceDisplay/model.js.map +1 -1
  4. package/esm/LinearReferenceSequenceDisplay/model.d.ts +1 -3
  5. package/esm/LinearReferenceSequenceDisplay/model.js +13 -5
  6. package/esm/LinearReferenceSequenceDisplay/model.js.map +1 -1
  7. package/package.json +2 -2
  8. package/src/LinearReferenceSequenceDisplay/model.ts +12 -5
package/dist/LinearReferenceSequenceDisplay/model.d.ts CHANGED
@@ -108,9 +108,7 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  }, {
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  rendererTypeName: string;
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- error: unknown; /**
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- * #method
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- */
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+ error: unknown;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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  }> | null;
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  readonly adapterConfig: any;
package/dist/LinearReferenceSequenceDisplay/model.js CHANGED
@@ -88,12 +88,20 @@ function modelFactory(configSchema) {
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  self.showTranslation = !self.showTranslation;
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  },
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  afterAttach() {
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- // auto-adjust height depending on settings
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  (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(() => {
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- const t = self.showTranslation ? 100 : 0;
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- const r = self.showReverse ? 20 : 0;
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- const s = self.showForward ? 20 : 0;
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- self.setHeight(t + r + s);
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+ const view = (0, util_1.getContainingView)(self);
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+ if ((view === null || view === void 0 ? void 0 : view.bpPerPx) >= 1) {
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+ self.setHeight(50);
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+ }
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+ else {
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+ const { showTranslation, showReverse, showForward } = self;
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+ const r1 = showReverse && showTranslation ? 60 : 0;
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+ const r2 = showForward && showTranslation ? 60 : 0;
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+ const t = r1 + r2;
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+ const r = showReverse ? 20 : 0;
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+ const s = showForward ? 20 : 0;
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+ self.setHeight(t + r + s);
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+ }
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  }));
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  },
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  }))
package/dist/LinearReferenceSequenceDisplay/model.js.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/LinearReferenceSequenceDisplay/model.ts"],"names":[],"mappings":";;;AAAA,qDAAoD;AACpD,kFAG2C;AAC3C,+DAGoC;AACpC,6CAAsD;AACtD,+BAA8B;AAE9B;;;GAGG;AACH,SAAgB,YAAY,CAAC,YAAwC;IACnE,OAAO,uBAAK;SACT,OAAO,CACN,gCAAgC,EAChC,6CAAiB,EACjB,uBAAK,CAAC,KAAK,CAAC;QACV;;WAEG;QACH,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,gCAAgC,CAAC;QACrD;;WAEG;QACH,aAAa,EAAE,IAAA,sCAAsB,EAAC,YAAY,CAAC;QACnD;;WAEG;QACH,WAAW,EAAE,IAAI;QACjB;;WAEG;QACH,WAAW,EAAE,IAAI;QACjB;;WAEG;QACH,eAAe,EAAE,IAAI;KACtB,CAAC,CACH;SACA,KAAK,CAAC,IAAI,CAAC,EAAE;QACZ,MAAM,EAAE,WAAW,EAAE,gBAAgB,EAAE,GAAG,IAAI,CAAA;QAC9C,OAAO;YACL;;eAEG;YACH,WAAW;gBACT,MAAM,EAAE,WAAW,EAAE,WAAW,EAAE,eAAe,EAAE,GAAG,IAAI,CAAA;gBAC1D,OAAO;oBACL,GAAG,gBAAgB,EAAE;oBACrB,aAAa,EAAE,IAAI,CAAC,aAAa;oBACjC,MAAM,EAAE,IAAI,CAAC,aAAa,CAAC,QAAQ;oBACnC,WAAW;oBACX,WAAW;oBACX,eAAe;iBAChB,CAAA;YACH,CAAC;SACF,CAAA;IACH,CAAC,CAAC;SACD,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,sBAAsB,EAAC,YAAY;YACjC,MAAM,IAAI,GAAG,IAAA,wBAAiB,EAAC,IAAI,CAA0B,CAAA;YAC7D,OAAO,CAAA,IAAI,aAAJ,IAAI,uBAAJ,IAAI,CAAE,OAAO,KAAI,CAAC,CAAC,CAAC,CAAC,yBAAyB,CAAC,CAAC,CAAC,SAAS,CAAA;QACnE,CAAC;QACD;;WAEG;QACH,IAAI,gBAAgB;YAClB,OAAO,IAAI,CAAC,aAAa,CAAC,QAAQ,CAAC,IAAI,CAAA;QACzC,CAAC;KACF,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;WAEG;QACH,iBAAiB;YACf,IAAI,CAAC,WAAW,GAAG,CAAC,IAAI,CAAC,WAAW,CAAA;QACtC,CAAC;QACD;;WAEG;QACH,iBAAiB;YACf,IAAI,CAAC,WAAW,GAAG,CAAC,IAAI,CAAC,WAAW,CAAA;QACtC,CAAC;QACD;;WAEG;QACH,qBAAqB;YACnB,IAAI,CAAC,eAAe,GAAG,CAAC,IAAI,CAAC,eAAe,CAAA;QAC9C,CAAC;QACD,WAAW;YACT,IAAA,6BAAW,EACT,IAAI,EACJ,IAAA,cAAO,EAAC,GAAG,EAAE;gBACX,MAAM,IAAI,GAAG,IAAA,wBAAiB,EAAC,IAAI,CAA0B,CAAA;gBAC7D,IAAI,CAAA,IAAI,aAAJ,IAAI,uBAAJ,IAAI,CAAE,OAAO,KAAI,CAAC,EAAE;oBACtB,IAAI,CAAC,SAAS,CAAC,EAAE,CAAC,CAAA;iBACnB;qBAAM;oBACL,MAAM,EAAE,eAAe,EAAE,WAAW,EAAE,WAAW,EAAE,GAAG,IAAI,CAAA;oBAC1D,MAAM,EAAE,GAAG,WAAW,IAAI,eAAe,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAA;oBAClD,MAAM,EAAE,GAAG,WAAW,IAAI,eAAe,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAA;oBAClD,MAAM,CAAC,GAAG,EAAE,GAAG,EAAE,CAAA;oBACjB,MAAM,CAAC,GAAG,WAAW,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAA;oBAC9B,MAAM,CAAC,GAAG,WAAW,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAA;oBAC9B,IAAI,CAAC,SAAS,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAA;iBAC1B;YACH,CAAC,CAAC,CACH,CAAA;QACH,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,cAAc;YACZ,OAAO;gBACL;oBACE,KAAK,EAAE,cAAc;oBACrB,IAAI,EAAE,UAAU;oBAChB,OAAO,EAAE,IAAI,CAAC,WAAW;oBACzB,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,iBAAiB,EAAE;iBACxC;gBACD;oBACE,KAAK,EAAE,cAAc;oBACrB,IAAI,EAAE,UAAU;oBAChB,OAAO,EAAE,IAAI,CAAC,WAAW;oBACzB,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,iBAAiB,EAAE;iBACxC;gBACD;oBACE,KAAK,EAAE,kBAAkB;oBACzB,IAAI,EAAE,UAAU;oBAChB,OAAO,EAAE,IAAI,CAAC,eAAe;oBAC7B,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,qBAAqB,EAAE;iBAC5C;aACF,CAAA;QACH,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC;AAhID,oCAgIC"}
package/esm/LinearReferenceSequenceDisplay/model.d.ts CHANGED
@@ -108,9 +108,7 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  }, {
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  rendererTypeName: string;
111
- error: unknown; /**
112
- * #method
113
- */
111
+ error: unknown;
114
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
115
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  }> | null;
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  readonly adapterConfig: any;
package/esm/LinearReferenceSequenceDisplay/model.js CHANGED
@@ -85,12 +85,20 @@ export function modelFactory(configSchema) {
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  self.showTranslation = !self.showTranslation;
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  },
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  afterAttach() {
88
- // auto-adjust height depending on settings
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  addDisposer(self, autorun(() => {
90
- const t = self.showTranslation ? 100 : 0;
91
- const r = self.showReverse ? 20 : 0;
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- const s = self.showForward ? 20 : 0;
93
- self.setHeight(t + r + s);
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+ const view = getContainingView(self);
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+ if ((view === null || view === void 0 ? void 0 : view.bpPerPx) >= 1) {
91
+ self.setHeight(50);
92
+ }
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+ else {
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+ const { showTranslation, showReverse, showForward } = self;
95
+ const r1 = showReverse && showTranslation ? 60 : 0;
96
+ const r2 = showForward && showTranslation ? 60 : 0;
97
+ const t = r1 + r2;
98
+ const r = showReverse ? 20 : 0;
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+ const s = showForward ? 20 : 0;
100
+ self.setHeight(t + r + s);
101
+ }
94
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  }));
95
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  },
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  }))
package/esm/LinearReferenceSequenceDisplay/model.js.map CHANGED
@@ -1 +1 @@
1
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1
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package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-sequence",
3
- "version": "2.3.3",
3
+ "version": "2.3.4",
4
4
  "description": "JBrowse 2 sequence adapters, tracks, etc.",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -58,5 +58,5 @@
58
58
  "distModule": "esm/index.js",
59
59
  "srcModule": "src/index.ts",
60
60
  "module": "esm/index.js",
61
- "gitHead": "283e0387ccd5acc9f092cf00804d1fcac212e68d"
61
+ "gitHead": "98ae48be91ee2371e1b2768a907b4997995e9915"
62
62
  }
package/src/LinearReferenceSequenceDisplay/model.ts CHANGED
@@ -96,14 +96,21 @@ export function modelFactory(configSchema: AnyConfigurationSchemaType) {
96
96
  self.showTranslation = !self.showTranslation
97
97
  },
98
98
  afterAttach() {
99
- // auto-adjust height depending on settings
100
99
  addDisposer(
101
100
  self,
102
101
  autorun(() => {
103
- const t = self.showTranslation ? 100 : 0
104
- const r = self.showReverse ? 20 : 0
105
- const s = self.showForward ? 20 : 0
106
- self.setHeight(t + r + s)
102
+ const view = getContainingView(self) as LinearGenomeViewModel
103
+ if (view?.bpPerPx >= 1) {
104
+ self.setHeight(50)
105
+ } else {
106
+ const { showTranslation, showReverse, showForward } = self
107
+ const r1 = showReverse && showTranslation ? 60 : 0
108
+ const r2 = showForward && showTranslation ? 60 : 0
109
+ const t = r1 + r2
110
+ const r = showReverse ? 20 : 0
111
+ const s = showForward ? 20 : 0
112
+ self.setHeight(t + r + s)
113
+ }
107
114
  }),
108
115
  )
109
116
  },