@jbrowse/plugin-sequence 2.3.1 → 2.3.3

package/esm/LinearReferenceSequenceDisplay/model.js

@@ -1,20 +1,42 @@
-import { types } from 'mobx-state-tree';
+import { addDisposer, types } from 'mobx-state-tree';
 import { BaseLinearDisplay, } from '@jbrowse/plugin-linear-genome-view';
 import { ConfigurationReference, } from '@jbrowse/core/configuration';
 import { getContainingView } from '@jbrowse/core/util';
+import { autorun } from 'mobx';
+/**
+ * #stateModel LinearReferenceSequenceDisplay
+ * base model `BaseLinearDisplay`
+ */
 export function modelFactory(configSchema) {
     return types
         .compose('LinearReferenceSequenceDisplay', BaseLinearDisplay, types.model({
+        /**
+         * #property
+         */
         type: types.literal('LinearReferenceSequenceDisplay'),
+        /**
+         * #property
+         */
         configuration: ConfigurationReference(configSchema),
-        showForward: types.optional(types.boolean, true),
-        showReverse: types.optional(types.boolean, true),
-        showTranslation: types.optional(types.boolean, true),
-        height: 180,
+        /**
+         * #property
+         */
+        showForward: true,
+        /**
+         * #property
+         */
+        showReverse: true,
+        /**
+         * #property
+         */
+        showTranslation: true,
     }))
         .views(self => {
         const { renderProps: superRenderProps } = self;
         return {
+            /**
+             * #method
+             */
             renderProps() {
                 const { showForward, showReverse, showTranslation } = self;
                 return {
@@ -26,55 +48,75 @@ export function modelFactory(configSchema) {
                     showTranslation,
                 };
             },
-            regionCannotBeRendered( /* region */) {
-                const view = getContainingView(self);
-                if (view && view.bpPerPx >= 1) {
-                    return 'Zoom in to see sequence';
-                }
-                return undefined;
-            },
-            get rendererTypeName() {
-                return self.configuration.renderer.type;
-            },
         };
     })
+        .views(self => ({
+        /**
+         * #method
+         */
+        regionCannotBeRendered( /* region */) {
+            const view = getContainingView(self);
+            return (view === null || view === void 0 ? void 0 : view.bpPerPx) >= 1 ? 'Zoom in to see sequence' : undefined;
+        },
+        /**
+         * #getter
+         */
+        get rendererTypeName() {
+            return self.configuration.renderer.type;
+        },
+    }))
         .actions(self => ({
+        /**
+         * #action
+         */
         toggleShowForward() {
             self.showForward = !self.showForward;
         },
+        /**
+         * #action
+         */
         toggleShowReverse() {
             self.showReverse = !self.showReverse;
         },
+        /**
+         * #action
+         */
         toggleShowTranslation() {
             self.showTranslation = !self.showTranslation;
         },
+        afterAttach() {
+            // auto-adjust height depending on settings
+            addDisposer(self, autorun(() => {
+                const t = self.showTranslation ? 100 : 0;
+                const r = self.showReverse ? 20 : 0;
+                const s = self.showForward ? 20 : 0;
+                self.setHeight(t + r + s);
+            }));
+        },
     }))
         .views(self => ({
+        /**
+         * #method
+         */
         trackMenuItems() {
             return [
                 {
                     label: 'Show forward',
                     type: 'checkbox',
                     checked: self.showForward,
-                    onClick: () => {
-                        self.toggleShowForward();
-                    },
+                    onClick: () => self.toggleShowForward(),
                 },
                 {
                     label: 'Show reverse',
                     type: 'checkbox',
                     checked: self.showReverse,
-                    onClick: () => {
-                        self.toggleShowReverse();
-                    },
+                    onClick: () => self.toggleShowReverse(),
                 },
                 {
                     label: 'Show translation',
                     type: 'checkbox',
                     checked: self.showTranslation,
-                    onClick: () => {
-                        self.toggleShowTranslation();
-                    },
+                    onClick: () => self.toggleShowTranslation(),
                 },
             ];
         },

package/esm/LinearReferenceSequenceDisplay/model.js.map

@@ -1 +1 @@
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+{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/LinearReferenceSequenceDisplay/model.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AACpD,OAAO,EACL,iBAAiB,GAElB,MAAM,oCAAoC,CAAA;AAC3C,OAAO,EAEL,sBAAsB,GACvB,MAAM,6BAA6B,CAAA;AACpC,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AACtD,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAE9B;;;GAGG;AACH,MAAM,UAAU,YAAY,CAAC,YAAwC;IACnE,OAAO,KAAK;SACT,OAAO,CACN,gCAAgC,EAChC,iBAAiB,EACjB,KAAK,CAAC,KAAK,CAAC;QACV;;WAEG;QACH,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,gCAAgC,CAAC;QACrD;;WAEG;QACH,aAAa,EAAE,sBAAsB,CAAC,YAAY,CAAC;QACnD;;WAEG;QACH,WAAW,EAAE,IAAI;QACjB;;WAEG;QACH,WAAW,EAAE,IAAI;QACjB;;WAEG;QACH,eAAe,EAAE,IAAI;KACtB,CAAC,CACH;SACA,KAAK,CAAC,IAAI,CAAC,EAAE;QACZ,MAAM,EAAE,WAAW,EAAE,gBAAgB,EAAE,GAAG,IAAI,CAAA;QAC9C,OAAO;YACL;;eAEG;YACH,WAAW;gBACT,MAAM,EAAE,WAAW,EAAE,WAAW,EAAE,eAAe,EAAE,GAAG,IAAI,CAAA;gBAC1D,OAAO;oBACL,GAAG,gBAAgB,EAAE;oBACrB,aAAa,EAAE,IAAI,CAAC,aAAa;oBACjC,MAAM,EAAE,IAAI,CAAC,aAAa,CAAC,QAAQ;oBACnC,WAAW;oBACX,WAAW;oBACX,eAAe;iBAChB,CAAA;YACH,CAAC;SACF,CAAA;IACH,CAAC,CAAC;SACD,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,sBAAsB,EAAC,YAAY;YACjC,MAAM,IAAI,GAAG,iBAAiB,CAAC,IAAI,CAA0B,CAAA;YAC7D,OAAO,CAAA,IAAI,aAAJ,IAAI,uBAAJ,IAAI,CAAE,OAAO,KAAI,CAAC,CAAC,CAAC,CAAC,yBAAyB,CAAC,CAAC,CAAC,SAAS,CAAA;QACnE,CAAC;QACD;;WAEG;QACH,IAAI,gBAAgB;YAClB,OAAO,IAAI,CAAC,aAAa,CAAC,QAAQ,CAAC,IAAI,CAAA;QACzC,CAAC;KACF,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;WAEG;QACH,iBAAiB;YACf,IAAI,CAAC,WAAW,GAAG,CAAC,IAAI,CAAC,WAAW,CAAA;QACtC,CAAC;QACD;;WAEG;QACH,iBAAiB;YACf,IAAI,CAAC,WAAW,GAAG,CAAC,IAAI,CAAC,WAAW,CAAA;QACtC,CAAC;QACD;;WAEG;QACH,qBAAqB;YACnB,IAAI,CAAC,eAAe,GAAG,CAAC,IAAI,CAAC,eAAe,CAAA;QAC9C,CAAC;QACD,WAAW;YACT,2CAA2C;YAC3C,WAAW,CACT,IAAI,EACJ,OAAO,CAAC,GAAG,EAAE;gBACX,MAAM,CAAC,GAAG,IAAI,CAAC,eAAe,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAA;gBACxC,MAAM,CAAC,GAAG,IAAI,CAAC,WAAW,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAA;gBACnC,MAAM,CAAC,GAAG,IAAI,CAAC,WAAW,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAA;gBACnC,IAAI,CAAC,SAAS,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAA;YAC3B,CAAC,CAAC,CACH,CAAA;QACH,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,cAAc;YACZ,OAAO;gBACL;oBACE,KAAK,EAAE,cAAc;oBACrB,IAAI,EAAE,UAAU;oBAChB,OAAO,EAAE,IAAI,CAAC,WAAW;oBACzB,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,iBAAiB,EAAE;iBACxC;gBACD;oBACE,KAAK,EAAE,cAAc;oBACrB,IAAI,EAAE,UAAU;oBAChB,OAAO,EAAE,IAAI,CAAC,WAAW;oBACzB,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,iBAAiB,EAAE;iBACxC;gBACD;oBACE,KAAK,EAAE,kBAAkB;oBACzB,IAAI,EAAE,UAAU;oBAChB,OAAO,EAAE,IAAI,CAAC,eAAe;oBAC7B,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,qBAAqB,EAAE;iBAC5C;aACF,CAAA;QACH,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC"}

package/esm/SequenceSearchAdapter/SequenceSearchAdapter.js

@@ -2,6 +2,7 @@ import { BaseFeatureDataAdapter, } from '@jbrowse/core/data_adapters/BaseAdapter
 import { ObservableCreate } from '@jbrowse/core/util/rxjs';
 import { SimpleFeature, revcom, doesIntersect2, } from '@jbrowse/core/util';
 import { toArray } from 'rxjs/operators';
+import { firstValueFrom } from 'rxjs';
 export default class extends BaseFeatureDataAdapter {
     async configure() {
         var _a;
@@ -32,7 +33,7 @@ export default class extends BaseFeatureDataAdapter {
                 start: queryStart,
                 end: queryEnd,
             }, opts);
-            const feats = await ret.pipe(toArray()).toPromise();
+            const feats = await firstValueFrom(ret.pipe(toArray()));
             const residues = ((_a = feats[0]) === null || _a === void 0 ? void 0 : _a.get('seq')) || '';
             const search = this.getConf('search');
             const searchForward = this.getConf('searchForward');

package/esm/SequenceSearchAdapter/SequenceSearchAdapter.js.map

@@ -1 +1 @@
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+{"version":3,"file":"SequenceSearchAdapter.js","sourceRoot":"","sources":["../../src/SequenceSearchAdapter/SequenceSearchAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAChD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,EACL,aAAa,EAGb,MAAM,EACN,cAAc,GACf,MAAM,oBAAoB,CAAA;AAC3B,OAAO,EAAE,OAAO,EAAE,MAAM,gBAAgB,CAAA;AACxC,OAAO,EAAE,cAAc,EAAE,MAAM,MAAM,CAAA;AAErC,MAAM,CAAC,OAAO,MAAO,SAAQ,sBAAsB;IAC1C,KAAK,CAAC,SAAS;;QACpB,MAAM,OAAO,GAAG,MAAM,CAAA,MAAA,IAAI,CAAC,aAAa,qDAAG,IAAI,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAC,CAAA,CAAA;QAC3E,IAAI,CAAC,OAAO,EAAE;YACZ,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;SAC5C;QACD,OAAO,OAAO,CAAC,WAAqC,CAAA;IACtD,CAAC;IAEM,KAAK,CAAC,WAAW;QACtB,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,OAAO,OAAO,CAAC,WAAW,EAAE,CAAA;IAC9B,CAAC;IAEM,WAAW,CAAC,KAAa,EAAE,IAAiB;QACjD,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;;YAChD,MAAM,eAAe,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;YAC9C,MAAM,EAAE,GAAG,IAAI,CAAA;YACf,IAAI,EAAE,KAAK,EAAE,UAAU,EAAE,GAAG,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;YAChD,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,UAAU,GAAG,EAAE,CAAC,CAAA;YACzC,QAAQ,IAAI,EAAE,CAAA;YAEd,IAAI,QAAQ,GAAG,CAAC,IAAI,UAAU,GAAG,QAAQ,EAAE;gBACzC,QAAQ,CAAC,QAAQ,EAAE,CAAA;gBACnB,OAAM;aACP;YAED,MAAM,GAAG,GAAG,eAAe,CAAC,WAAW,CACrC;gBACE,GAAG,KAAK;gBACR,KAAK,EAAE,UAAU;gBACjB,GAAG,EAAE,QAAQ;aACd,EACD,IAAI,CACL,CAAA;YACD,MAAM,KAAK,GAAG,MAAM,cAAc,CAAC,GAAG,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC,CAAC,CAAA;YACvD,MAAM,QAAQ,GAAW,CAAA,MAAA,KAAK,CAAC,CAAC,CAAC,0CAAE,GAAG,CAAC,KAAK,CAAC,KAAI,EAAE,CAAA;YACnD,MAAM,MAAM,GAAG,IAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAA;YACrC,MAAM,aAAa,GAAG,IAAI,CAAC,OAAO,CAAC,eAAe,CAAC,CAAA;YACnD,MAAM,aAAa,GAAG,IAAI,CAAC,OAAO,CAAC,eAAe,CAAC,CAAA;YACnD,MAAM,eAAe,GAAG,IAAI,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAA;YACvD,MAAM,EAAE,GAAG,IAAI,MAAM,CAAC,MAAM,EAAE,GAAG,GAAG,CAAC,eAAe,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;YAEjE,IAAI,MAAM,EAAE;gBACV,IAAI,aAAa,EAAE;oBACjB,MAAM,OAAO,GAAG,QAAQ,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAA;oBACrC,KAAK,MAAM,KAAK,IAAI,OAAO,EAAE;wBAC3B,MAAM,CAAC,GAAG,UAAU,GAAG,CAAC,KAAK,CAAC,KAAK,IAAI,CAAC,CAAC,CAAA;wBAEzC,IAAI,cAAc,CAAC,CAAC,EAAE,CAAC,GAAG,MAAM,CAAC,MAAM,EAAE,KAAK,CAAC,KAAK,EAAE,KAAK,CAAC,GAAG,CAAC,EAAE;4BAChE,QAAQ,CAAC,IAAI,CACX,IAAI,aAAa,CAAC;gCAChB,QAAQ,EAAE,GAAG,IAAI,CAAC,EAAE,UAAU,CAAC,IAAI;gCACnC,OAAO,EAAE,KAAK,CAAC,OAAO;gCACtB,KAAK,EAAE,CAAC;gCACR,GAAG,EAAE,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM;gCACxB,IAAI,EAAE,KAAK,CAAC,CAAC,CAAC;gCACd,MAAM,EAAE,CAAC;6BACV,CAAC,CACH,CAAA;yBACF;qBACF;iBACF;gBACD,IAAI,aAAa,EAAE;oBACjB,MAAM,OAAO,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAA;oBAC7C,KAAK,MAAM,KAAK,IAAI,OAAO,EAAE;wBAC3B,MAAM,CAAC,GAAG,QAAQ,GAAG,CAAC,KAAK,CAAC,KAAK,IAAI,CAAC,CAAC,CAAA;wBACvC,IAAI,cAAc,CAAC,CAAC,EAAE,CAAC,GAAG,MAAM,CAAC,MAAM,EAAE,KAAK,CAAC,KAAK,EAAE,KAAK,CAAC,GAAG,CAAC,EAAE;4BAChE,QAAQ,CAAC,IAAI,CACX,IAAI,aAAa,CAAC;gCAChB,QAAQ,EAAE,GAAG,IAAI,CAAC,EAAE,UAAU,CAAC,IAAI;gCACnC,OAAO,EAAE,KAAK,CAAC,OAAO;gCACtB,KAAK,EAAE,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM;gCAC1B,IAAI,EAAE,KAAK,CAAC,CAAC,CAAC;gCACd,GAAG,EAAE,CAAC;gCACN,MAAM,EAAE,CAAC,CAAC;6BACX,CAAC,CACH,CAAA;yBACF;qBACF;iBACF;aACF;YAED,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,CAAC,CAAA;IACJ,CAAC;IAEM,aAAa,KAAI,CAAC;CAC1B"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-sequence",
-  "version": "2.3.1",
+  "version": "2.3.3",
   "description": "JBrowse 2 sequence adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
@@ -50,7 +50,7 @@
     "mobx-react": "^7.0.0",
     "mobx-state-tree": "^5.0.0",
     "react": ">=16.8.0",
-    "rxjs": "^6.0.0"
+    "rxjs": "^7.0.0"
   },
   "publishConfig": {
     "access": "public"
@@ -58,5 +58,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "75c4cba2f50c626c62881abd5851dbf2435c2401"
+  "gitHead": "283e0387ccd5acc9f092cf00804d1fcac212e68d"
 }

package/src/DivSequenceRenderer/components/DivSequenceRendering.test.tsx

@@ -0,0 +1,161 @@
+import React from 'react'
+import { render } from '@testing-library/react'
+import SimpleFeature from '@jbrowse/core/util/simpleFeature'
+import DivSequenceRendering from './DivSequenceRendering'
+import DivRenderingConfigSchema from '../configSchema'
+
+// This just keeps our testing logs clean by not displaying `console.error`s
+// from errors we intentionally throw in our tests. Hopefully React will
+// someday provide a way for error boundaries to prevent error logging so we
+// won't have to do this: https://github.com/facebook/react/issues/15069
+const originalError = console.error
+beforeAll(() => {
+  console.error = (...args) => {
+    if (
+      args[0].includes('feature one did not contain a valid `seq` attribute') ||
+      args[0].includes(
+        'The above error occurred in the <SequenceDivs> component',
+      )
+    ) {
+      return
+    }
+    originalError.call(console, ...args)
+  }
+})
+
+afterAll(() => {
+  console.error = originalError
+})
+
+test('renders with one, zoomed way out', () => {
+  const { container } = render(
+    <DivSequenceRendering
+      regions={[
+        { assemblyName: 'volvox', refName: 'zonk', start: 0, end: 1000 },
+      ]}
+      features={
+        new Map([
+          [
+            'one',
+            new SimpleFeature({
+              uniqueId: 'one',
+              start: 1,
+              end: 3,
+              seq: 'AB',
+            }),
+          ],
+        ])
+      }
+      config={DivRenderingConfigSchema.create({})}
+      bpPerPx={3}
+    />,
+  )
+
+  expect(container).toMatchSnapshot()
+})
+
+test('renders with one feature with no seq, zoomed in, should throw', () => {
+  const { container } = render(
+    <DivSequenceRendering
+      regions={[
+        { assemblyName: 'volvox', refName: 'zonk', start: 0, end: 1000 },
+      ]}
+      features={
+        new Map([
+          ['one', new SimpleFeature({ uniqueId: 'one', start: 1, end: 3 })],
+        ])
+      }
+      config={DivRenderingConfigSchema.create({})}
+      bpPerPx={0.05}
+    />,
+  )
+
+  expect(container).toMatchSnapshot()
+})
+
+test('renders with one feature with an incorrect seq, zoomed in, should throw', () => {
+  const { container } = render(
+    <DivSequenceRendering
+      regions={[
+        { assemblyName: 'volvox', refName: 'zonk', start: 0, end: 1000 },
+      ]}
+      features={
+        new Map([
+          [
+            'one',
+            new SimpleFeature({
+              uniqueId: 'one',
+              start: 1,
+              end: 3,
+              seq: 'ABC',
+            }),
+          ],
+        ])
+      }
+      config={DivRenderingConfigSchema.create({})}
+      bpPerPx={0.05}
+    />,
+  )
+
+  expect(container).toMatchSnapshot()
+})
+
+test('renders with one feature with a correct seq, zoomed in, should render nicely', () => {
+  const { container } = render(
+    <DivSequenceRendering
+      regions={[
+        { assemblyName: 'volvox', refName: 'zonk', start: 0, end: 1000 },
+      ]}
+      features={
+        new Map([
+          [
+            'one',
+            new SimpleFeature({
+              uniqueId: 'one',
+              start: 1,
+              end: 10,
+              seq: 'ABCDEFGHI',
+            }),
+          ],
+        ])
+      }
+      config={DivRenderingConfigSchema.create({})}
+      bpPerPx={0.05}
+    />,
+  )
+
+  expect(container).toMatchSnapshot()
+})
+
+test('renders with one feature reversed with a correct seq, zoomed in, should render nicely', () => {
+  const { container } = render(
+    <DivSequenceRendering
+      regions={[
+        {
+          assemblyName: 'volvox',
+          refName: 'zonk',
+          start: 0,
+          end: 1000,
+          reversed: true,
+        },
+      ]}
+      features={
+        new Map([
+          [
+            'one',
+            new SimpleFeature({
+              uniqueId: 'one',
+              start: 1,
+              end: 10,
+              seq: 'ABCDEFGHI',
+            }),
+          ],
+        ])
+      }
+      config={DivRenderingConfigSchema.create({})}
+      bpPerPx={0.05}
+    />,
+  )
+
+  expect(container).toMatchSnapshot()
+})

package/src/DivSequenceRenderer/components/DivSequenceRendering.tsx

@@ -1,8 +1,8 @@
 /* eslint-disable @typescript-eslint/no-explicit-any */
 import React from 'react'
-import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema'
+import { AnyConfigurationModel } from '@jbrowse/core/configuration'
 import { contrastingTextColor } from '@jbrowse/core/util/color'
-import { Feature } from '@jbrowse/core/util/simpleFeature'
+import { Feature } from '@jbrowse/core/util'
 import { Region } from '@jbrowse/core/util/types'
 import { createJBrowseTheme } from '@jbrowse/core/ui'
 import { observer } from 'mobx-react'
@@ -16,19 +16,6 @@ import {
   generateCodonTable,
 } from '@jbrowse/core/util'
 
-interface MyProps {
-  exportSVG?: { rasterizeLayers: boolean }
-  features: Map<string, Feature>
-  regions: Region[]
-  bpPerPx: number
-  config: AnyConfigurationModel
-  highResolutionScaling: number
-  theme: any
-  showForward: boolean
-  showReverse: boolean
-  showTranslation: boolean
-}
-
 function Translation(props: {
   codonTable: any
   seq: string
@@ -179,9 +166,9 @@ const SequenceSVG = ({
   regions,
   theme: configTheme,
   features = new Map(),
-  showReverse,
-  showForward,
-  showTranslation,
+  showReverse = true,
+  showForward = true,
+  showTranslation = true,
   bpPerPx,
 }: any) => {
   const [region] = regions
@@ -283,7 +270,17 @@ const Wrapper = ({ exportSVG, width, totalHeight, children }: any) => {
   )
 }
 
-function Sequence(props: MyProps) {
+function Sequence(props: {
+  exportSVG?: { rasterizeLayers: boolean }
+  features: Map<string, Feature>
+  regions: Region[]
+  bpPerPx: number
+  config: AnyConfigurationModel
+  theme?: any
+  showForward?: boolean
+  showReverse?: boolean
+  showTranslation?: boolean
+}) {
   const { regions, bpPerPx } = props
   const [region] = regions
   const width = (region.end - region.start) / bpPerPx