@jbrowse/plugin-sequence 2.2.2 → 2.3.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (39) hide show
  1. package/dist/BgzipFastaAdapter/index.js +1 -3
  2. package/dist/BgzipFastaAdapter/index.js.map +1 -1
  3. package/dist/ChromSizesAdapter/index.js +1 -3
  4. package/dist/ChromSizesAdapter/index.js.map +1 -1
  5. package/dist/IndexedFastaAdapter/index.js +1 -3
  6. package/dist/IndexedFastaAdapter/index.js.map +1 -1
  7. package/dist/LinearReferenceSequenceDisplay/index.js +4 -2
  8. package/dist/LinearReferenceSequenceDisplay/index.js.map +1 -1
  9. package/dist/LinearReferenceSequenceDisplay/model.d.ts +1 -1
  10. package/dist/ReferenceSequenceTrack/index.js +1 -0
  11. package/dist/ReferenceSequenceTrack/index.js.map +1 -1
  12. package/dist/SequenceSearchAdapter/index.js +1 -3
  13. package/dist/SequenceSearchAdapter/index.js.map +1 -1
  14. package/dist/TwoBitAdapter/index.js +1 -3
  15. package/dist/TwoBitAdapter/index.js.map +1 -1
  16. package/esm/BgzipFastaAdapter/index.js +1 -3
  17. package/esm/BgzipFastaAdapter/index.js.map +1 -1
  18. package/esm/ChromSizesAdapter/index.js +1 -3
  19. package/esm/ChromSizesAdapter/index.js.map +1 -1
  20. package/esm/IndexedFastaAdapter/index.js +1 -3
  21. package/esm/IndexedFastaAdapter/index.js.map +1 -1
  22. package/esm/LinearReferenceSequenceDisplay/index.js +4 -2
  23. package/esm/LinearReferenceSequenceDisplay/index.js.map +1 -1
  24. package/esm/LinearReferenceSequenceDisplay/model.d.ts +1 -1
  25. package/esm/ReferenceSequenceTrack/index.js +1 -0
  26. package/esm/ReferenceSequenceTrack/index.js.map +1 -1
  27. package/esm/SequenceSearchAdapter/index.js +1 -3
  28. package/esm/SequenceSearchAdapter/index.js.map +1 -1
  29. package/esm/TwoBitAdapter/index.js +1 -3
  30. package/esm/TwoBitAdapter/index.js.map +1 -1
  31. package/package.json +2 -3
  32. package/src/BgzipFastaAdapter/index.ts +1 -3
  33. package/src/ChromSizesAdapter/index.ts +1 -3
  34. package/src/DivSequenceRenderer/components/DivSequenceRendering.test.js +0 -2
  35. package/src/IndexedFastaAdapter/index.ts +1 -3
  36. package/src/LinearReferenceSequenceDisplay/index.ts +4 -2
  37. package/src/ReferenceSequenceTrack/index.ts +1 -0
  38. package/src/SequenceSearchAdapter/index.ts +1 -3
  39. package/src/TwoBitAdapter/index.ts +1 -3
package/dist/BgzipFastaAdapter/index.js CHANGED
@@ -31,12 +31,10 @@ const configSchema_1 = __importDefault(require("./configSchema"));
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  exports.default = (pluginManager) => {
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  pluginManager.addAdapterType(() => new AdapterType_1.default({
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  name: 'BgzipFastaAdapter',
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+ displayName: 'Bgzip-indexed FASTA adapter',
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  configSchema: configSchema_1.default,
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  adapterMetadata: {
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- category: null,
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  hiddenFromGUI: true,
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- displayName: null,
39
- description: null,
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  },
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  getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./BgzipFastaAdapter'))).then(r => r.default),
42
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  }));
package/dist/BgzipFastaAdapter/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BgzipFastaAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,kGAAyE;AAEzE,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;QACd,IAAI,EAAE,mBAAmB;QACzB,YAAY,EAAZ,sBAAY;QACZ,eAAe,EAAE;YACf,QAAQ,EAAE,IAAI;YACd,aAAa,EAAE,IAAI;YACnB,WAAW,EAAE,IAAI;YACjB,WAAW,EAAE,IAAI;SAClB;QACD,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,qBAAqB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACrD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BgzipFastaAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,kGAAyE;AAEzE,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;QACd,IAAI,EAAE,mBAAmB;QACzB,WAAW,EAAE,6BAA6B;QAC1C,YAAY,EAAZ,sBAAY;QACZ,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;QACD,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,qBAAqB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACrD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
package/dist/ChromSizesAdapter/index.js CHANGED
@@ -31,12 +31,10 @@ const configSchema_1 = __importDefault(require("./configSchema"));
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  exports.default = (pluginManager) => {
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  pluginManager.addAdapterType(() => new AdapterType_1.default({
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  name: 'ChromSizesAdapter',
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+ displayName: 'Chrom sizes adapter',
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  configSchema: configSchema_1.default,
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  adapterMetadata: {
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- category: null,
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  hiddenFromGUI: true,
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- displayName: null,
39
- description: null,
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  },
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  getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./ChromSizesAdapter'))).then(r => r.default),
42
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  }));
package/dist/ChromSizesAdapter/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/ChromSizesAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,kGAAyE;AAEzE,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;QACd,IAAI,EAAE,mBAAmB;QACzB,YAAY,EAAZ,sBAAY;QACZ,eAAe,EAAE;YACf,QAAQ,EAAE,IAAI;YACd,aAAa,EAAE,IAAI;YACnB,WAAW,EAAE,IAAI;YACjB,WAAW,EAAE,IAAI;SAClB;QACD,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,qBAAqB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACrD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/ChromSizesAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,kGAAyE;AAEzE,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;QACd,IAAI,EAAE,mBAAmB;QACzB,WAAW,EAAE,qBAAqB;QAClC,YAAY,EAAZ,sBAAY;QACZ,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;QACD,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,qBAAqB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACrD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
package/dist/IndexedFastaAdapter/index.js CHANGED
@@ -31,12 +31,10 @@ const configSchema_1 = __importDefault(require("./configSchema"));
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  exports.default = (pluginManager) => {
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  pluginManager.addAdapterType(() => new AdapterType_1.default({
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  name: 'IndexedFastaAdapter',
34
+ displayName: 'Indexed FASTA adapter',
34
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  configSchema: configSchema_1.default,
35
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  adapterMetadata: {
36
- category: null,
37
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  hiddenFromGUI: true,
38
- displayName: null,
39
- description: null,
40
38
  },
41
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  getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./IndexedFastaAdapter'))).then(r => r.default),
42
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  }));
package/dist/IndexedFastaAdapter/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/IndexedFastaAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,kGAAyE;AAEzE,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;QACd,IAAI,EAAE,qBAAqB;QAC3B,YAAY,EAAZ,sBAAY;QACZ,eAAe,EAAE;YACf,QAAQ,EAAE,IAAI;YACd,aAAa,EAAE,IAAI;YACnB,WAAW,EAAE,IAAI;YACjB,WAAW,EAAE,IAAI;SAClB;QACD,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,uBAAuB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACvD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/IndexedFastaAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,kGAAyE;AAEzE,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;QACd,IAAI,EAAE,qBAAqB;QAC3B,WAAW,EAAE,uBAAuB;QACpC,YAAY,EAAZ,sBAAY;QACZ,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;QACD,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,uBAAuB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACvD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
package/dist/LinearReferenceSequenceDisplay/index.js CHANGED
@@ -1,19 +1,21 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
+ const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
3
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  const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
4
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  const configSchema_1 = require("./configSchema");
5
6
  const model_1 = require("./model");
6
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  exports.default = (pluginManager) => {
7
8
  pluginManager.addDisplayType(() => {
8
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  const stateModel = (0, model_1.modelFactory)(configSchema_1.configSchema);
9
- return {
10
+ return new pluggableElementTypes_1.DisplayType({
10
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  name: 'LinearReferenceSequenceDisplay',
11
12
  configSchema: configSchema_1.configSchema,
12
13
  stateModel,
14
+ displayName: 'Reference sequence display',
13
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  trackType: 'ReferenceSequenceTrack',
14
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  viewType: 'LinearGenomeView',
15
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  ReactComponent: plugin_linear_genome_view_1.BaseLinearDisplayComponent,
16
- };
18
+ });
17
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  });
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  };
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  //# sourceMappingURL=index.js.map
package/dist/LinearReferenceSequenceDisplay/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearReferenceSequenceDisplay/index.ts"],"names":[],"mappings":";;AACA,kFAA+E;AAE/E,iDAA6C;AAC7C,mCAAsC;AAEtC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,UAAU,GAAG,IAAA,oBAAY,EAAC,2BAAY,CAAC,CAAA;QAC7C,OAAO;YACL,IAAI,EAAE,gCAAgC;YACtC,YAAY,EAAZ,2BAAY;YACZ,UAAU;YACV,SAAS,EAAE,wBAAwB;YACnC,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAE,sDAA0B;SAC3C,CAAA;IACH,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearReferenceSequenceDisplay/index.ts"],"names":[],"mappings":";;AAAA,+EAAiE;AAEjE,kFAA+E;AAE/E,iDAA6C;AAC7C,mCAAsC;AAEtC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,UAAU,GAAG,IAAA,oBAAY,EAAC,2BAAY,CAAC,CAAA;QAC7C,OAAO,IAAI,mCAAW,CAAC;YACrB,IAAI,EAAE,gCAAgC;YACtC,YAAY,EAAZ,2BAAY;YACZ,UAAU;YACV,WAAW,EAAE,4BAA4B;YACzC,SAAS,EAAE,wBAAwB;YACnC,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAE,sDAA0B;SAC3C,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
package/dist/LinearReferenceSequenceDisplay/model.d.ts CHANGED
@@ -115,10 +115,10 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
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  reload(): void;
116
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  } & {
117
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  currBpPerPx: number;
118
+ scrollTop: number;
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  message: string;
119
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  featureIdUnderMouse: string | undefined;
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  contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
121
- scrollTop: number;
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  estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
123
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  estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
124
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  } & {
package/dist/ReferenceSequenceTrack/index.js CHANGED
@@ -11,6 +11,7 @@ exports.default = (pluginManager) => {
11
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  const configSchema = (0, configSchema_1.createReferenceSeqTrackConfig)(pluginManager);
12
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  return new TrackType_1.default({
13
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  name: 'ReferenceSequenceTrack',
14
+ displayName: 'Reference sequence track',
14
15
  configSchema,
15
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  stateModel: (0, models_1.createBaseTrackModel)(pluginManager, 'ReferenceSequenceTrack', configSchema),
16
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  });
package/dist/ReferenceSequenceTrack/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/ReferenceSequenceTrack/index.ts"],"names":[],"mappings":";;;;;AAEA,8FAAqE;AACrE,uEAAiF;AACjF,iDAA8D;AAE9D,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE;QAC9B,MAAM,YAAY,GAAG,IAAA,4CAA6B,EAAC,aAAa,CAAC,CAAA;QAEjE,OAAO,IAAI,mBAAS,CAAC;YACnB,IAAI,EAAE,wBAAwB;YAC9B,YAAY;YACZ,UAAU,EAAE,IAAA,6BAAoB,EAC9B,aAAa,EACb,wBAAwB,EACxB,YAAY,CACb;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/ReferenceSequenceTrack/index.ts"],"names":[],"mappings":";;;;;AAEA,8FAAqE;AACrE,uEAAiF;AACjF,iDAA8D;AAE9D,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE;QAC9B,MAAM,YAAY,GAAG,IAAA,4CAA6B,EAAC,aAAa,CAAC,CAAA;QAEjE,OAAO,IAAI,mBAAS,CAAC;YACnB,IAAI,EAAE,wBAAwB;YAC9B,WAAW,EAAE,0BAA0B;YACvC,YAAY;YACZ,UAAU,EAAE,IAAA,6BAAoB,EAC9B,aAAa,EACb,wBAAwB,EACxB,YAAY,CACb;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
package/dist/SequenceSearchAdapter/index.js CHANGED
@@ -31,11 +31,9 @@ const configSchema_1 = __importDefault(require("./configSchema"));
31
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  exports.default = (pluginManager) => {
32
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  pluginManager.addAdapterType(() => new AdapterType_1.default({
33
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  name: 'SequenceSearchAdapter',
34
+ displayName: 'Sequence search adapter',
34
35
  adapterMetadata: {
35
- category: null,
36
36
  hiddenFromGUI: true,
37
- displayName: null,
38
- description: null,
39
37
  },
40
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  configSchema: configSchema_1.default,
41
39
  getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./SequenceSearchAdapter'))).then(r => r.default),
package/dist/SequenceSearchAdapter/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/SequenceSearchAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,kGAAyE;AAEzE,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;QACd,IAAI,EAAE,uBAAuB;QAC7B,eAAe,EAAE;YACf,QAAQ,EAAE,IAAI;YACd,aAAa,EAAE,IAAI;YACnB,WAAW,EAAE,IAAI;YACjB,WAAW,EAAE,IAAI;SAClB;QACD,YAAY,EAAZ,sBAAY;QACZ,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,yBAAyB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACzD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/SequenceSearchAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,kGAAyE;AAEzE,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;QACd,IAAI,EAAE,uBAAuB;QAC7B,WAAW,EAAE,yBAAyB;QACtC,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;QACD,YAAY,EAAZ,sBAAY;QACZ,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,yBAAyB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACzD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
package/dist/TwoBitAdapter/index.js CHANGED
@@ -31,12 +31,10 @@ const configSchema_1 = __importDefault(require("./configSchema"));
31
31
  exports.default = (pluginManager) => {
32
32
  pluginManager.addAdapterType(() => new AdapterType_1.default({
33
33
  name: 'TwoBitAdapter',
34
+ displayName: 'TwoBit adapter',
34
35
  configSchema: configSchema_1.default,
35
36
  adapterMetadata: {
36
- category: null,
37
37
  hiddenFromGUI: true,
38
- displayName: null,
39
- description: null,
40
38
  },
41
39
  getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./TwoBitAdapter'))).then(r => r.default),
42
40
  }));
package/dist/TwoBitAdapter/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/TwoBitAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,kGAAyE;AAEzE,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;QACd,IAAI,EAAE,eAAe;QACrB,YAAY,EAAZ,sBAAY;QACZ,eAAe,EAAE;YACf,QAAQ,EAAE,IAAI;YACd,aAAa,EAAE,IAAI;YACnB,WAAW,EAAE,IAAI;YACjB,WAAW,EAAE,IAAI;SAClB;QACD,eAAe,EAAE,GAAG,EAAE,CAAC,kDAAO,iBAAiB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACtE,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/TwoBitAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,kGAAyE;AAEzE,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;QACd,IAAI,EAAE,eAAe;QACrB,WAAW,EAAE,gBAAgB;QAC7B,YAAY,EAAZ,sBAAY;QACZ,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;QACD,eAAe,EAAE,GAAG,EAAE,CAAC,kDAAO,iBAAiB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACtE,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
package/esm/BgzipFastaAdapter/index.js CHANGED
@@ -3,12 +3,10 @@ import configSchema from './configSchema';
3
3
  export default (pluginManager) => {
4
4
  pluginManager.addAdapterType(() => new AdapterType({
5
5
  name: 'BgzipFastaAdapter',
6
+ displayName: 'Bgzip-indexed FASTA adapter',
6
7
  configSchema,
7
8
  adapterMetadata: {
8
- category: null,
9
9
  hiddenFromGUI: true,
10
- displayName: null,
11
- description: null,
12
10
  },
13
11
  getAdapterClass: () => import('./BgzipFastaAdapter').then(r => r.default),
14
12
  }));
package/esm/BgzipFastaAdapter/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BgzipFastaAdapter/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AAEzE,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,mBAAmB;QACzB,YAAY;QACZ,eAAe,EAAE;YACf,QAAQ,EAAE,IAAI;YACd,aAAa,EAAE,IAAI;YACnB,WAAW,EAAE,IAAI;YACjB,WAAW,EAAE,IAAI;SAClB;QACD,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,qBAAqB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACrD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BgzipFastaAdapter/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AAEzE,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,mBAAmB;QACzB,WAAW,EAAE,6BAA6B;QAC1C,YAAY;QACZ,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;QACD,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,qBAAqB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACrD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
package/esm/ChromSizesAdapter/index.js CHANGED
@@ -3,12 +3,10 @@ import configSchema from './configSchema';
3
3
  export default (pluginManager) => {
4
4
  pluginManager.addAdapterType(() => new AdapterType({
5
5
  name: 'ChromSizesAdapter',
6
+ displayName: 'Chrom sizes adapter',
6
7
  configSchema,
7
8
  adapterMetadata: {
8
- category: null,
9
9
  hiddenFromGUI: true,
10
- displayName: null,
11
- description: null,
12
10
  },
13
11
  getAdapterClass: () => import('./ChromSizesAdapter').then(r => r.default),
14
12
  }));
package/esm/ChromSizesAdapter/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/ChromSizesAdapter/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AAEzE,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,mBAAmB;QACzB,YAAY;QACZ,eAAe,EAAE;YACf,QAAQ,EAAE,IAAI;YACd,aAAa,EAAE,IAAI;YACnB,WAAW,EAAE,IAAI;YACjB,WAAW,EAAE,IAAI;SAClB;QACD,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,qBAAqB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACrD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/ChromSizesAdapter/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AAEzE,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,mBAAmB;QACzB,WAAW,EAAE,qBAAqB;QAClC,YAAY;QACZ,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;QACD,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,qBAAqB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACrD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
package/esm/IndexedFastaAdapter/index.js CHANGED
@@ -3,12 +3,10 @@ import configSchema from './configSchema';
3
3
  export default (pluginManager) => {
4
4
  pluginManager.addAdapterType(() => new AdapterType({
5
5
  name: 'IndexedFastaAdapter',
6
+ displayName: 'Indexed FASTA adapter',
6
7
  configSchema,
7
8
  adapterMetadata: {
8
- category: null,
9
9
  hiddenFromGUI: true,
10
- displayName: null,
11
- description: null,
12
10
  },
13
11
  getAdapterClass: () => import('./IndexedFastaAdapter').then(r => r.default),
14
12
  }));
package/esm/IndexedFastaAdapter/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/IndexedFastaAdapter/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AAEzE,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,qBAAqB;QAC3B,YAAY;QACZ,eAAe,EAAE;YACf,QAAQ,EAAE,IAAI;YACd,aAAa,EAAE,IAAI;YACnB,WAAW,EAAE,IAAI;YACjB,WAAW,EAAE,IAAI;SAClB;QACD,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,uBAAuB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACvD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/IndexedFastaAdapter/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AAEzE,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,qBAAqB;QAC3B,WAAW,EAAE,uBAAuB;QACpC,YAAY;QACZ,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;QACD,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,uBAAuB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACvD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
package/esm/LinearReferenceSequenceDisplay/index.js CHANGED
@@ -1,17 +1,19 @@
1
+ import { DisplayType } from '@jbrowse/core/pluggableElementTypes';
1
2
  import { BaseLinearDisplayComponent } from '@jbrowse/plugin-linear-genome-view';
2
3
  import { configSchema } from './configSchema';
3
4
  import { modelFactory } from './model';
4
5
  export default (pluginManager) => {
5
6
  pluginManager.addDisplayType(() => {
6
7
  const stateModel = modelFactory(configSchema);
7
- return {
8
+ return new DisplayType({
8
9
  name: 'LinearReferenceSequenceDisplay',
9
10
  configSchema,
10
11
  stateModel,
12
+ displayName: 'Reference sequence display',
11
13
  trackType: 'ReferenceSequenceTrack',
12
14
  viewType: 'LinearGenomeView',
13
15
  ReactComponent: BaseLinearDisplayComponent,
14
- };
16
+ });
15
17
  });
16
18
  };
17
19
  //# sourceMappingURL=index.js.map
package/esm/LinearReferenceSequenceDisplay/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearReferenceSequenceDisplay/index.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,0BAA0B,EAAE,MAAM,oCAAoC,CAAA;AAE/E,OAAO,EAAE,YAAY,EAAE,MAAM,gBAAgB,CAAA;AAC7C,OAAO,EAAE,YAAY,EAAE,MAAM,SAAS,CAAA;AAEtC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,UAAU,GAAG,YAAY,CAAC,YAAY,CAAC,CAAA;QAC7C,OAAO;YACL,IAAI,EAAE,gCAAgC;YACtC,YAAY;YACZ,UAAU;YACV,SAAS,EAAE,wBAAwB;YACnC,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAE,0BAA0B;SAC3C,CAAA;IACH,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearReferenceSequenceDisplay/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,qCAAqC,CAAA;AAEjE,OAAO,EAAE,0BAA0B,EAAE,MAAM,oCAAoC,CAAA;AAE/E,OAAO,EAAE,YAAY,EAAE,MAAM,gBAAgB,CAAA;AAC7C,OAAO,EAAE,YAAY,EAAE,MAAM,SAAS,CAAA;AAEtC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,UAAU,GAAG,YAAY,CAAC,YAAY,CAAC,CAAA;QAC7C,OAAO,IAAI,WAAW,CAAC;YACrB,IAAI,EAAE,gCAAgC;YACtC,YAAY;YACZ,UAAU;YACV,WAAW,EAAE,4BAA4B;YACzC,SAAS,EAAE,wBAAwB;YACnC,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAE,0BAA0B;SAC3C,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
package/esm/LinearReferenceSequenceDisplay/model.d.ts CHANGED
@@ -115,10 +115,10 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
115
115
  reload(): void;
116
116
  } & {
117
117
  currBpPerPx: number;
118
+ scrollTop: number;
118
119
  message: string;
119
120
  featureIdUnderMouse: string | undefined;
120
121
  contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
121
- scrollTop: number;
122
122
  estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
123
123
  estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
124
124
  } & {
package/esm/ReferenceSequenceTrack/index.js CHANGED
@@ -6,6 +6,7 @@ export default (pluginManager) => {
6
6
  const configSchema = createReferenceSeqTrackConfig(pluginManager);
7
7
  return new TrackType({
8
8
  name: 'ReferenceSequenceTrack',
9
+ displayName: 'Reference sequence track',
9
10
  configSchema,
10
11
  stateModel: createBaseTrackModel(pluginManager, 'ReferenceSequenceTrack', configSchema),
11
12
  });
package/esm/ReferenceSequenceTrack/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/ReferenceSequenceTrack/index.ts"],"names":[],"mappings":"AAEA,OAAO,SAAS,MAAM,+CAA+C,CAAA;AACrE,OAAO,EAAE,oBAAoB,EAAE,MAAM,4CAA4C,CAAA;AACjF,OAAO,EAAE,6BAA6B,EAAE,MAAM,gBAAgB,CAAA;AAE9D,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE;QAC9B,MAAM,YAAY,GAAG,6BAA6B,CAAC,aAAa,CAAC,CAAA;QAEjE,OAAO,IAAI,SAAS,CAAC;YACnB,IAAI,EAAE,wBAAwB;YAC9B,YAAY;YACZ,UAAU,EAAE,oBAAoB,CAC9B,aAAa,EACb,wBAAwB,EACxB,YAAY,CACb;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/ReferenceSequenceTrack/index.ts"],"names":[],"mappings":"AAEA,OAAO,SAAS,MAAM,+CAA+C,CAAA;AACrE,OAAO,EAAE,oBAAoB,EAAE,MAAM,4CAA4C,CAAA;AACjF,OAAO,EAAE,6BAA6B,EAAE,MAAM,gBAAgB,CAAA;AAE9D,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE;QAC9B,MAAM,YAAY,GAAG,6BAA6B,CAAC,aAAa,CAAC,CAAA;QAEjE,OAAO,IAAI,SAAS,CAAC;YACnB,IAAI,EAAE,wBAAwB;YAC9B,WAAW,EAAE,0BAA0B;YACvC,YAAY;YACZ,UAAU,EAAE,oBAAoB,CAC9B,aAAa,EACb,wBAAwB,EACxB,YAAY,CACb;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
package/esm/SequenceSearchAdapter/index.js CHANGED
@@ -3,11 +3,9 @@ import configSchema from './configSchema';
3
3
  export default (pluginManager) => {
4
4
  pluginManager.addAdapterType(() => new AdapterType({
5
5
  name: 'SequenceSearchAdapter',
6
+ displayName: 'Sequence search adapter',
6
7
  adapterMetadata: {
7
- category: null,
8
8
  hiddenFromGUI: true,
9
- displayName: null,
10
- description: null,
11
9
  },
12
10
  configSchema,
13
11
  getAdapterClass: () => import('./SequenceSearchAdapter').then(r => r.default),
package/esm/SequenceSearchAdapter/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/SequenceSearchAdapter/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AAEzE,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,uBAAuB;QAC7B,eAAe,EAAE;YACf,QAAQ,EAAE,IAAI;YACd,aAAa,EAAE,IAAI;YACnB,WAAW,EAAE,IAAI;YACjB,WAAW,EAAE,IAAI;SAClB;QACD,YAAY;QACZ,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,yBAAyB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACzD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/SequenceSearchAdapter/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AAEzE,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,uBAAuB;QAC7B,WAAW,EAAE,yBAAyB;QACtC,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;QACD,YAAY;QACZ,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,yBAAyB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACzD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
package/esm/TwoBitAdapter/index.js CHANGED
@@ -3,12 +3,10 @@ import configSchema from './configSchema';
3
3
  export default (pluginManager) => {
4
4
  pluginManager.addAdapterType(() => new AdapterType({
5
5
  name: 'TwoBitAdapter',
6
+ displayName: 'TwoBit adapter',
6
7
  configSchema,
7
8
  adapterMetadata: {
8
- category: null,
9
9
  hiddenFromGUI: true,
10
- displayName: null,
11
- description: null,
12
10
  },
13
11
  getAdapterClass: () => import('./TwoBitAdapter').then(r => r.default),
14
12
  }));
package/esm/TwoBitAdapter/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/TwoBitAdapter/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AAEzE,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,eAAe;QACrB,YAAY;QACZ,eAAe,EAAE;YACf,QAAQ,EAAE,IAAI;YACd,aAAa,EAAE,IAAI;YACnB,WAAW,EAAE,IAAI;YACjB,WAAW,EAAE,IAAI;SAClB;QACD,eAAe,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,iBAAiB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACtE,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/TwoBitAdapter/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AAEzE,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,eAAe;QACrB,WAAW,EAAE,gBAAgB;QAC7B,YAAY;QACZ,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;QACD,eAAe,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,iBAAiB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACtE,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-sequence",
3
- "version": "2.2.2",
3
+ "version": "2.3.1",
4
4
  "description": "JBrowse 2 sequence adapters, tracks, etc.",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -49,7 +49,6 @@
49
49
  "mobx": "^6.0.0",
50
50
  "mobx-react": "^7.0.0",
51
51
  "mobx-state-tree": "^5.0.0",
52
- "prop-types": "^15.0.0",
53
52
  "react": ">=16.8.0",
54
53
  "rxjs": "^6.0.0"
55
54
  },
@@ -59,5 +58,5 @@
59
58
  "distModule": "esm/index.js",
60
59
  "srcModule": "src/index.ts",
61
60
  "module": "esm/index.js",
62
- "gitHead": "abbc00e8feedbc58de84a7a3e735ec0224909b29"
61
+ "gitHead": "75c4cba2f50c626c62881abd5851dbf2435c2401"
63
62
  }
package/src/BgzipFastaAdapter/index.ts CHANGED
@@ -8,12 +8,10 @@ export default (pluginManager: PluginManager) => {
8
8
  () =>
9
9
  new AdapterType({
10
10
  name: 'BgzipFastaAdapter',
11
+ displayName: 'Bgzip-indexed FASTA adapter',
11
12
  configSchema,
12
13
  adapterMetadata: {
13
- category: null,
14
14
  hiddenFromGUI: true,
15
- displayName: null,
16
- description: null,
17
15
  },
18
16
  getAdapterClass: () =>
19
17
  import('./BgzipFastaAdapter').then(r => r.default),
package/src/ChromSizesAdapter/index.ts CHANGED
@@ -8,12 +8,10 @@ export default (pluginManager: PluginManager) => {
8
8
  () =>
9
9
  new AdapterType({
10
10
  name: 'ChromSizesAdapter',
11
+ displayName: 'Chrom sizes adapter',
11
12
  configSchema,
12
13
  adapterMetadata: {
13
- category: null,
14
14
  hiddenFromGUI: true,
15
- displayName: null,
16
- description: null,
17
15
  },
18
16
  getAdapterClass: () =>
19
17
  import('./ChromSizesAdapter').then(r => r.default),
package/src/DivSequenceRenderer/components/DivSequenceRendering.test.js CHANGED
@@ -1,5 +1,4 @@
1
1
  import React from 'react'
2
- import ReactPropTypes from 'prop-types'
3
2
  import { render } from '@testing-library/react'
4
3
  import { createJBrowseTheme } from '@jbrowse/core/ui'
5
4
  import PrecomputedLayout from '@jbrowse/core/util/layouts/PrecomputedLayout'
@@ -37,7 +36,6 @@ class ErrorCatcher extends React.Component {
37
36
  return children
38
37
  }
39
38
  }
40
- ErrorCatcher.propTypes = { children: ReactPropTypes.node.isRequired }
41
39
 
42
40
  describe('<DivSequenceRendering />', () => {
43
41
  // This just keeps our testing logs clean by not displaying `console.error`s
package/src/IndexedFastaAdapter/index.ts CHANGED
@@ -8,12 +8,10 @@ export default (pluginManager: PluginManager) => {
8
8
  () =>
9
9
  new AdapterType({
10
10
  name: 'IndexedFastaAdapter',
11
+ displayName: 'Indexed FASTA adapter',
11
12
  configSchema,
12
13
  adapterMetadata: {
13
- category: null,
14
14
  hiddenFromGUI: true,
15
- displayName: null,
16
- description: null,
17
15
  },
18
16
  getAdapterClass: () =>
19
17
  import('./IndexedFastaAdapter').then(r => r.default),
package/src/LinearReferenceSequenceDisplay/index.ts CHANGED
@@ -1,3 +1,4 @@
1
+ import { DisplayType } from '@jbrowse/core/pluggableElementTypes'
1
2
  import PluginManager from '@jbrowse/core/PluginManager'
2
3
  import { BaseLinearDisplayComponent } from '@jbrowse/plugin-linear-genome-view'
3
4
 
@@ -7,13 +8,14 @@ import { modelFactory } from './model'
7
8
  export default (pluginManager: PluginManager) => {
8
9
  pluginManager.addDisplayType(() => {
9
10
  const stateModel = modelFactory(configSchema)
10
- return {
11
+ return new DisplayType({
11
12
  name: 'LinearReferenceSequenceDisplay',
12
13
  configSchema,
13
14
  stateModel,
15
+ displayName: 'Reference sequence display',
14
16
  trackType: 'ReferenceSequenceTrack',
15
17
  viewType: 'LinearGenomeView',
16
18
  ReactComponent: BaseLinearDisplayComponent,
17
- }
19
+ })
18
20
  })
19
21
  }
package/src/ReferenceSequenceTrack/index.ts CHANGED
@@ -10,6 +10,7 @@ export default (pluginManager: PluginManager) => {
10
10
 
11
11
  return new TrackType({
12
12
  name: 'ReferenceSequenceTrack',
13
+ displayName: 'Reference sequence track',
13
14
  configSchema,
14
15
  stateModel: createBaseTrackModel(
15
16
  pluginManager,
package/src/SequenceSearchAdapter/index.ts CHANGED
@@ -8,11 +8,9 @@ export default (pluginManager: PluginManager) => {
8
8
  () =>
9
9
  new AdapterType({
10
10
  name: 'SequenceSearchAdapter',
11
+ displayName: 'Sequence search adapter',
11
12
  adapterMetadata: {
12
- category: null,
13
13
  hiddenFromGUI: true,
14
- displayName: null,
15
- description: null,
16
14
  },
17
15
  configSchema,
18
16
  getAdapterClass: () =>
package/src/TwoBitAdapter/index.ts CHANGED
@@ -8,12 +8,10 @@ export default (pluginManager: PluginManager) => {
8
8
  () =>
9
9
  new AdapterType({
10
10
  name: 'TwoBitAdapter',
11
+ displayName: 'TwoBit adapter',
11
12
  configSchema,
12
13
  adapterMetadata: {
13
- category: null,
14
14
  hiddenFromGUI: true,
15
- displayName: null,
16
- description: null,
17
15
  },
18
16
  getAdapterClass: () => import('./TwoBitAdapter').then(r => r.default),
19
17
  }),