@jbrowse/plugin-sequence 2.13.0 → 2.14.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/ChromSizesAdapter/ChromSizesAdapter.js +2 -2
- package/dist/DivSequenceRenderer/components/DivSequenceRendering.js +19 -17
- package/dist/IndexedFastaAdapter/IndexedFastaAdapter.js +2 -2
- package/dist/LinearReferenceSequenceDisplay/model.d.ts +25 -5
- package/dist/LinearReferenceSequenceDisplay/model.js +69 -29
- package/dist/ReferenceSequenceTrack/configSchema.d.ts +16 -0
- package/dist/ReferenceSequenceTrack/configSchema.js +17 -2
- package/dist/SequenceSearchAdapter/SequenceSearchAdapter.js +1 -1
- package/dist/TwoBitAdapter/TwoBitAdapter.js +4 -1
- package/dist/UnindexedFastaAdapter/UnindexedFastaAdapter.d.ts +31 -0
- package/dist/UnindexedFastaAdapter/UnindexedFastaAdapter.js +87 -0
- package/dist/UnindexedFastaAdapter/configSchema.d.ts +29 -0
- package/dist/UnindexedFastaAdapter/configSchema.js +36 -0
- package/dist/UnindexedFastaAdapter/index.d.ts +2 -0
- package/dist/UnindexedFastaAdapter/index.js +42 -0
- package/dist/createExtensionPoints.js +3 -3
- package/dist/index.js +2 -0
- package/esm/ChromSizesAdapter/ChromSizesAdapter.js +2 -2
- package/esm/DivSequenceRenderer/components/DivSequenceRendering.js +19 -17
- package/esm/IndexedFastaAdapter/IndexedFastaAdapter.js +2 -2
- package/esm/LinearReferenceSequenceDisplay/model.d.ts +25 -5
- package/esm/LinearReferenceSequenceDisplay/model.js +71 -31
- package/esm/ReferenceSequenceTrack/configSchema.d.ts +16 -0
- package/esm/ReferenceSequenceTrack/configSchema.js +17 -2
- package/esm/SequenceSearchAdapter/SequenceSearchAdapter.js +1 -1
- package/esm/TwoBitAdapter/TwoBitAdapter.js +4 -1
- package/esm/UnindexedFastaAdapter/UnindexedFastaAdapter.d.ts +31 -0
- package/esm/UnindexedFastaAdapter/UnindexedFastaAdapter.js +84 -0
- package/esm/UnindexedFastaAdapter/configSchema.d.ts +29 -0
- package/esm/UnindexedFastaAdapter/configSchema.js +34 -0
- package/esm/UnindexedFastaAdapter/index.d.ts +2 -0
- package/esm/UnindexedFastaAdapter/index.js +13 -0
- package/esm/createExtensionPoints.js +3 -3
- package/esm/index.js +2 -0
- package/package.json +4 -4
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@@ -12,7 +12,7 @@ export default function ExtensionPointsF(pluginManager) {
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if (regexGuess.test(fileName) && !adapterHint) {
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return obj;
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}
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-
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+
if (adapterHint === adapterName) {
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return obj;
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}
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return adapterGuesser(file, index, adapterHint);
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@@ -39,7 +39,7 @@ export default function ExtensionPointsF(pluginManager) {
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if (regexGuess.test(fileName) && !adapterHint) {
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return obj;
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}
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-
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+
if (adapterHint === adapterName) {
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return obj;
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}
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return adapterGuesser(file, index, adapterHint);
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@@ -66,7 +66,7 @@ export default function ExtensionPointsF(pluginManager) {
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if (regexGuess.test(fileName) && !adapterHint) {
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return obj;
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}
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-
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+
if (adapterHint === adapterName) {
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return obj;
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}
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return adapterGuesser(file, index, adapterHint);
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package/esm/index.js
CHANGED
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@@ -4,6 +4,7 @@ import DivSequenceRendererF from './DivSequenceRenderer';
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import BgzipFastaAdapterF from './BgzipFastaAdapter';
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import ChromSizesAdapterF from './ChromSizesAdapter';
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import IndexedFastaAdapterF from './IndexedFastaAdapter';
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import UnindexedFastaAdapterF from './UnindexedFastaAdapter';
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import SequenceSearchAdapterF from './SequenceSearchAdapter';
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import ReferenceSequenceTrackF from './ReferenceSequenceTrack';
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import LinearReferenceSequenceDisplayF from './LinearReferenceSequenceDisplay';
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@@ -19,6 +20,7 @@ export default class SequencePlugin extends Plugin {
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BgzipFastaAdapterF(pluginManager);
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ChromSizesAdapterF(pluginManager);
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IndexedFastaAdapterF(pluginManager);
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+
UnindexedFastaAdapterF(pluginManager);
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SequenceSearchAdapterF(pluginManager);
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ReferenceSequenceTrackF(pluginManager);
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LinearReferenceSequenceDisplayF(pluginManager);
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package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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{
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"name": "@jbrowse/plugin-sequence",
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"version": "2.
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"version": "2.14.0",
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"description": "JBrowse 2 sequence adapters, tracks, etc.",
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"keywords": [
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"jbrowse",
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@@ -24,7 +24,7 @@
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],
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"scripts": {
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"build": "npm-run-all build:*",
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"test": "cd ../..; jest plugins/sequence",
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"test": "cd ../..; jest --passWithNoTests plugins/sequence",
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"prepublishOnly": "yarn test",
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"prepack": "yarn build && yarn useDist",
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"postpack": "yarn useSrc",
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@@ -38,7 +38,7 @@
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"dependencies": {
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"@gmod/abortable-promise-cache": "^2.0.0",
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"@gmod/indexedfasta": "^2.0.2",
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"@gmod/twobit": "^
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"@gmod/twobit": "^2.0.1"
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},
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"peerDependencies": {
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"@jbrowse/core": "^2.0.0",
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@@ -57,5 +57,5 @@
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"distModule": "esm/index.js",
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"srcModule": "src/index.ts",
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"module": "esm/index.js",
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"gitHead": "
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"gitHead": "9fb8231d932db40adf0a283081765431756c66ff"
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}
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