@jbrowse/plugin-sequence 2.0.0 → 2.0.1

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Files changed (8) hide show
  1. package/dist/ChromSizesAdapter/ChromSizesAdapter.d.ts +0 -1
  2. package/dist/ChromSizesAdapter/ChromSizesAdapter.js +0 -3
  3. package/dist/ChromSizesAdapter/ChromSizesAdapter.js.map +1 -1
  4. package/esm/ChromSizesAdapter/ChromSizesAdapter.d.ts +0 -1
  5. package/esm/ChromSizesAdapter/ChromSizesAdapter.js +0 -3
  6. package/esm/ChromSizesAdapter/ChromSizesAdapter.js.map +1 -1
  7. package/package.json +5 -5
  8. package/src/ChromSizesAdapter/ChromSizesAdapter.ts +0 -4
package/dist/ChromSizesAdapter/ChromSizesAdapter.d.ts CHANGED
@@ -13,7 +13,6 @@ export default class extends BaseAdapter implements RegionsAdapter {
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  start: number;
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  end: number;
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  }[]>;
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- getFeatures(): void;
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  getHeader(): {};
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  freeResources(): void;
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  }
package/dist/ChromSizesAdapter/ChromSizesAdapter.js CHANGED
@@ -123,9 +123,6 @@ var default_1 = /** @class */ (function (_super) {
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  });
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  });
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  };
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- default_1.prototype.getFeatures = function () {
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- throw new Error('sequence not available');
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- };
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  default_1.prototype.getHeader = function () {
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  return {};
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  };
package/dist/ChromSizesAdapter/ChromSizesAdapter.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"ChromSizesAdapter.js","sourceRoot":"","sources":["../../src/ChromSizesAdapter/ChromSizesAdapter.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,uEAGgD;AAEhD,4CAAoD;AAEpD,6DAA4D;AAM5D;IAA6B,6BAAW;IAMtC,mBACE,MAAuC,EACvC,aAAiC,EACjC,aAA6B;QAH/B,YAKE,kBAAM,MAAM,EAAE,aAAa,EAAE,aAAa,CAAC,SAW5C;QAVC,IAAM,kBAAkB,GAAG,IAAA,8BAAc,EAAC,MAAM,EAAE,oBAAoB,CAAC,CAAA;QACvE,IAAI,CAAC,kBAAkB,EAAE;YACvB,MAAM,IAAI,KAAK,CAAC,iCAAiC,CAAC,CAAA;SACnD;QACD,IAAM,IAAI,GAAG,IAAA,iBAAY,EACvB,kBAAkC,EAClC,KAAI,CAAC,aAAa,CACnB,CAAA;QACD,KAAI,CAAC,MAAM,GAAG,IAAI,CAAC,QAAQ,EAAE,CAAA;QAC7B,KAAI,CAAC,OAAO,GAAG,KAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;;IAChC,CAAC;IAEa,wBAAI,GAAlB,UAAmB,IAAuB;;;;;4BAC3B,qBAAM,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,EAAA;;wBAAlC,IAAI,GAAG,SAA2B;wBAClC,OAAO,GAA8B,EAAE,CAAA;wBAC7C,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE;4BAChB,MAAM,IAAI,KAAK,CAAC,8BAAuB,IAAI,CAAC,QAAQ,EAAE,CAAE,CAAC,CAAA;yBAC1D;wBACD,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,UAAC,IAAY;4BACpC,IAAI,IAAI,CAAC,MAAM,EAAE;gCACT,IAAA,KAAA,OAAiB,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,IAAA,EAAhC,MAAI,QAAA,EAAE,QAAM,QAAoB,CAAA;gCACvC,OAAO,CAAC,MAAI,CAAC,GAAG,CAAC,QAAM,CAAA;6BACxB;wBACH,CAAC,CAAC,CAAA;wBACF,sBAAO,OAAO,EAAA;;;;KACf;IAEY,8BAAU,GAAvB;;;;;4BACkB,qBAAM,IAAI,CAAC,OAAO,EAAA;;wBAA5B,OAAO,GAAG,SAAkB;wBAClC,sBAAO,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,GAAG,CAAC,UAAA,OAAO,IAAI,OAAA,CAAC;gCAC1C,OAAO,SAAA;gCACP,KAAK,EAAE,CAAC;gCACR,GAAG,EAAE,OAAO,CAAC,OAAO,CAAC;6BACtB,CAAC,EAJyC,CAIzC,CAAC,EAAA;;;;KACJ;IAEM,+BAAW,GAAlB;QACE,MAAM,IAAI,KAAK,CAAC,wBAAwB,CAAC,CAAA;IAC3C,CAAC;IAEM,6BAAS,GAAhB;QACE,OAAO,EAAE,CAAA;IACX,CAAC;IAEM,iCAAa,GAApB,WAAqB,gBAAgB,IAAS,CAAC;IACjD,gBAAC;AAAD,CAAC,AAzDD,CAA6B,yBAAW,GAyDvC"}
1
+ {"version":3,"file":"ChromSizesAdapter.js","sourceRoot":"","sources":["../../src/ChromSizesAdapter/ChromSizesAdapter.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,uEAGgD;AAEhD,4CAAoD;AAEpD,6DAA4D;AAM5D;IAA6B,6BAAW;IAMtC,mBACE,MAAuC,EACvC,aAAiC,EACjC,aAA6B;QAH/B,YAKE,kBAAM,MAAM,EAAE,aAAa,EAAE,aAAa,CAAC,SAW5C;QAVC,IAAM,kBAAkB,GAAG,IAAA,8BAAc,EAAC,MAAM,EAAE,oBAAoB,CAAC,CAAA;QACvE,IAAI,CAAC,kBAAkB,EAAE;YACvB,MAAM,IAAI,KAAK,CAAC,iCAAiC,CAAC,CAAA;SACnD;QACD,IAAM,IAAI,GAAG,IAAA,iBAAY,EACvB,kBAAkC,EAClC,KAAI,CAAC,aAAa,CACnB,CAAA;QACD,KAAI,CAAC,MAAM,GAAG,IAAI,CAAC,QAAQ,EAAE,CAAA;QAC7B,KAAI,CAAC,OAAO,GAAG,KAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;;IAChC,CAAC;IAEa,wBAAI,GAAlB,UAAmB,IAAuB;;;;;4BAC3B,qBAAM,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,EAAA;;wBAAlC,IAAI,GAAG,SAA2B;wBAClC,OAAO,GAA8B,EAAE,CAAA;wBAC7C,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE;4BAChB,MAAM,IAAI,KAAK,CAAC,8BAAuB,IAAI,CAAC,QAAQ,EAAE,CAAE,CAAC,CAAA;yBAC1D;wBACD,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,UAAC,IAAY;4BACpC,IAAI,IAAI,CAAC,MAAM,EAAE;gCACT,IAAA,KAAA,OAAiB,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,IAAA,EAAhC,MAAI,QAAA,EAAE,QAAM,QAAoB,CAAA;gCACvC,OAAO,CAAC,MAAI,CAAC,GAAG,CAAC,QAAM,CAAA;6BACxB;wBACH,CAAC,CAAC,CAAA;wBACF,sBAAO,OAAO,EAAA;;;;KACf;IAEY,8BAAU,GAAvB;;;;;4BACkB,qBAAM,IAAI,CAAC,OAAO,EAAA;;wBAA5B,OAAO,GAAG,SAAkB;wBAClC,sBAAO,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,GAAG,CAAC,UAAA,OAAO,IAAI,OAAA,CAAC;gCAC1C,OAAO,SAAA;gCACP,KAAK,EAAE,CAAC;gCACR,GAAG,EAAE,OAAO,CAAC,OAAO,CAAC;6BACtB,CAAC,EAJyC,CAIzC,CAAC,EAAA;;;;KACJ;IAEM,6BAAS,GAAhB;QACE,OAAO,EAAE,CAAA;IACX,CAAC;IAEM,iCAAa,GAApB,WAAqB,gBAAgB,IAAS,CAAC;IACjD,gBAAC;AAAD,CAAC,AArDD,CAA6B,yBAAW,GAqDvC"}
package/esm/ChromSizesAdapter/ChromSizesAdapter.d.ts CHANGED
@@ -13,7 +13,6 @@ export default class extends BaseAdapter implements RegionsAdapter {
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  start: number;
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  end: number;
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  }[]>;
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- getFeatures(): void;
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  getHeader(): {};
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  freeResources(): void;
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  }
package/esm/ChromSizesAdapter/ChromSizesAdapter.js CHANGED
@@ -34,9 +34,6 @@ export default class extends BaseAdapter {
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  end: refSeqs[refName],
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  }));
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  }
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- getFeatures() {
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- throw new Error('sequence not available');
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- }
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  getHeader() {
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  return {};
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  }
package/esm/ChromSizesAdapter/ChromSizesAdapter.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"ChromSizesAdapter.js","sourceRoot":"","sources":["../../src/ChromSizesAdapter/ChromSizesAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAEL,WAAW,GACZ,MAAM,yCAAyC,CAAA;AAEhD,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AAEpD,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAA;AAM5D,MAAM,CAAC,OAAO,MAAO,SAAQ,WAAW;IAMtC,YACE,MAAuC,EACvC,aAAiC,EACjC,aAA6B;QAE7B,KAAK,CAAC,MAAM,EAAE,aAAa,EAAE,aAAa,CAAC,CAAA;QAC3C,MAAM,kBAAkB,GAAG,cAAc,CAAC,MAAM,EAAE,oBAAoB,CAAC,CAAA;QACvE,IAAI,CAAC,kBAAkB,EAAE;YACvB,MAAM,IAAI,KAAK,CAAC,iCAAiC,CAAC,CAAA;SACnD;QACD,MAAM,IAAI,GAAG,YAAY,CACvB,kBAAkC,EAClC,IAAI,CAAC,aAAa,CACnB,CAAA;QACD,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,QAAQ,EAAE,CAAA;QAC7B,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;IAChC,CAAC;IAEO,KAAK,CAAC,IAAI,CAAC,IAAuB;QACxC,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;QACxC,MAAM,OAAO,GAA8B,EAAE,CAAA;QAC7C,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE;YAChB,MAAM,IAAI,KAAK,CAAC,uBAAuB,IAAI,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAA;SAC1D;QACD,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,CAAC,IAAY,EAAE,EAAE;YACxC,IAAI,IAAI,CAAC,MAAM,EAAE;gBACf,MAAM,CAAC,IAAI,EAAE,MAAM,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;gBACvC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,MAAM,CAAA;aACxB;QACH,CAAC,CAAC,CAAA;QACF,OAAO,OAAO,CAAA;IAChB,CAAC;IAEM,KAAK,CAAC,UAAU;QACrB,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,OAAO,CAAA;QAClC,OAAO,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC;YAC1C,OAAO;YACP,KAAK,EAAE,CAAC;YACR,GAAG,EAAE,OAAO,CAAC,OAAO,CAAC;SACtB,CAAC,CAAC,CAAA;IACL,CAAC;IAEM,WAAW;QAChB,MAAM,IAAI,KAAK,CAAC,wBAAwB,CAAC,CAAA;IAC3C,CAAC;IAEM,SAAS;QACd,OAAO,EAAE,CAAA;IACX,CAAC;IAEM,aAAa,EAAC,gBAAgB,IAAS,CAAC;CAChD"}
1
+ {"version":3,"file":"ChromSizesAdapter.js","sourceRoot":"","sources":["../../src/ChromSizesAdapter/ChromSizesAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAEL,WAAW,GACZ,MAAM,yCAAyC,CAAA;AAEhD,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AAEpD,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAA;AAM5D,MAAM,CAAC,OAAO,MAAO,SAAQ,WAAW;IAMtC,YACE,MAAuC,EACvC,aAAiC,EACjC,aAA6B;QAE7B,KAAK,CAAC,MAAM,EAAE,aAAa,EAAE,aAAa,CAAC,CAAA;QAC3C,MAAM,kBAAkB,GAAG,cAAc,CAAC,MAAM,EAAE,oBAAoB,CAAC,CAAA;QACvE,IAAI,CAAC,kBAAkB,EAAE;YACvB,MAAM,IAAI,KAAK,CAAC,iCAAiC,CAAC,CAAA;SACnD;QACD,MAAM,IAAI,GAAG,YAAY,CACvB,kBAAkC,EAClC,IAAI,CAAC,aAAa,CACnB,CAAA;QACD,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,QAAQ,EAAE,CAAA;QAC7B,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;IAChC,CAAC;IAEO,KAAK,CAAC,IAAI,CAAC,IAAuB;QACxC,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;QACxC,MAAM,OAAO,GAA8B,EAAE,CAAA;QAC7C,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE;YAChB,MAAM,IAAI,KAAK,CAAC,uBAAuB,IAAI,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAA;SAC1D;QACD,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,CAAC,IAAY,EAAE,EAAE;YACxC,IAAI,IAAI,CAAC,MAAM,EAAE;gBACf,MAAM,CAAC,IAAI,EAAE,MAAM,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;gBACvC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,MAAM,CAAA;aACxB;QACH,CAAC,CAAC,CAAA;QACF,OAAO,OAAO,CAAA;IAChB,CAAC;IAEM,KAAK,CAAC,UAAU;QACrB,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,OAAO,CAAA;QAClC,OAAO,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC;YAC1C,OAAO;YACP,KAAK,EAAE,CAAC;YACR,GAAG,EAAE,OAAO,CAAC,OAAO,CAAC;SACtB,CAAC,CAAC,CAAA;IACL,CAAC;IAEM,SAAS;QACd,OAAO,EAAE,CAAA;IACX,CAAC;IAEM,aAAa,EAAC,gBAAgB,IAAS,CAAC;CAChD"}
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@jbrowse/plugin-sequence",
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- "version": "2.0.0",
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+ "version": "2.0.1",
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  "description": "JBrowse 2 sequence adapters, tracks, etc.",
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  "keywords": [
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  "jbrowse",
@@ -44,9 +44,9 @@
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  "generic-filehandle": "^2.2.2"
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  },
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  "peerDependencies": {
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- "@jbrowse/core": "^1.0.0",
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- "@jbrowse/plugin-linear-genome-view": "^1.0.0",
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- "@jbrowse/plugin-wiggle": "^1.0.0",
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+ "@jbrowse/core": "^2.0.0",
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+ "@jbrowse/plugin-linear-genome-view": "^2.0.0",
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+ "@jbrowse/plugin-wiggle": "^2.0.0",
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  "@mui/material": "^5.0.0",
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  "mobx": "^6.0.0",
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  "mobx-react": "^7.0.0",
@@ -61,5 +61,5 @@
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  "distModule": "esm/index.js",
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  "srcModule": "src/index.ts",
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  "module": "esm/index.js",
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- "gitHead": "ecc7f5d47351a5ea04bc00f3a6eb6dfb607342e6"
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+ "gitHead": "ed935bf5612af3818abdc8ef52d100d5d81d33a2"
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  }
package/src/ChromSizesAdapter/ChromSizesAdapter.ts CHANGED
@@ -59,10 +59,6 @@ export default class extends BaseAdapter implements RegionsAdapter {
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  }))
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  }
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- public getFeatures() {
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- throw new Error('sequence not available')
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- }
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-
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  public getHeader() {
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  return {}
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  }