@jbrowse/plugin-sequence 1.7.11 → 2.1.0

package/dist/IndexedFastaAdapter/IndexedFastaAdapter.js

@@ -1,279 +1,190 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
-
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
-
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
-
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
-
-var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
-
-var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
-
-var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
-
-var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _indexedfasta = require("@gmod/indexedfasta");
-
-var _BaseAdapter = require("@jbrowse/core/data_adapters/BaseAdapter");
-
-var _io = require("@jbrowse/core/util/io");
-
-var _rxjs = require("@jbrowse/core/util/rxjs");
-
-var _util = require("@jbrowse/core/util");
-
-var _abortablePromiseCache = _interopRequireDefault(require("abortable-promise-cache"));
-
-var _QuickLRU = _interopRequireDefault(require("@jbrowse/core/util/QuickLRU"));
-
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
-
-function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
-
-var _default = /*#__PURE__*/function (_BaseSequenceAdapter) {
-  (0, _inherits2.default)(_default, _BaseSequenceAdapter);
-
-  var _super = _createSuper(_default);
-
-  function _default(config, getSubAdapter, pluginManager) {
-    var _this;
-
-    (0, _classCallCheck2.default)(this, _default);
-    _this = _super.call(this, config, getSubAdapter, pluginManager);
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "fasta", void 0);
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "header", void 0);
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "seqCache", new _abortablePromiseCache.default({
-      cache: new _QuickLRU.default({
-        maxSize: 200
-      }),
-      fill: function () {
-        var _fill = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(args, signal) {
-          var refName, start, end;
-          return _regenerator.default.wrap(function _callee$(_context) {
-            while (1) {
-              switch (_context.prev = _context.next) {
-                case 0:
-                  refName = args.refName, start = args.start, end = args.end;
-                  return _context.abrupt("return", _this.fasta.getSequence(refName, start, end, _objectSpread(_objectSpread({}, args), {}, {
-                    signal: signal
-                  })));
-
-                case 2:
-                case "end":
-                  return _context.stop();
-              }
-            }
-          }, _callee);
-        }));
-
-        function fill(_x, _x2) {
-          return _fill.apply(this, arguments);
+var __extends = (this && this.__extends) || (function () {
+    var extendStatics = function (d, b) {
+        extendStatics = Object.setPrototypeOf ||
+            ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
+            function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
+        return extendStatics(d, b);
+    };
+    return function (d, b) {
+        if (typeof b !== "function" && b !== null)
+            throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
+        extendStatics(d, b);
+        function __() { this.constructor = d; }
+        d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
+    };
+})();
+var __assign = (this && this.__assign) || function () {
+    __assign = Object.assign || function(t) {
+        for (var s, i = 1, n = arguments.length; i < n; i++) {
+            s = arguments[i];
+            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
+                t[p] = s[p];
         }
-
-        return fill;
-      }()
-    }));
-
-    var fastaLocation = _this.getConf('fastaLocation');
-
-    var faiLocation = _this.getConf('faiLocation');
-
-    var fastaOpts = {
-      fasta: (0, _io.openLocation)(fastaLocation, _this.pluginManager),
-      fai: (0, _io.openLocation)(faiLocation, _this.pluginManager)
+        return t;
     };
-    _this.fasta = new _indexedfasta.IndexedFasta(fastaOpts);
-    return _this;
-  }
-
-  (0, _createClass2.default)(_default, [{
-    key: "getRefNames",
-    value: function getRefNames(opts) {
-      return this.fasta.getSequenceNames(opts);
-    }
-  }, {
-    key: "getRegions",
-    value: function () {
-      var _getRegions = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(opts) {
-        var seqSizes;
-        return _regenerator.default.wrap(function _callee2$(_context2) {
-          while (1) {
-            switch (_context2.prev = _context2.next) {
-              case 0:
-                _context2.next = 2;
-                return this.fasta.getSequenceSizes(opts);
-
-              case 2:
-                seqSizes = _context2.sent;
-                return _context2.abrupt("return", Object.keys(seqSizes).map(function (refName) {
-                  return {
-                    refName: refName,
-                    start: 0,
-                    end: seqSizes[refName]
-                  };
-                }));
-
-              case 4:
-              case "end":
-                return _context2.stop();
+    return __assign.apply(this, arguments);
+};
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+var __generator = (this && this.__generator) || function (thisArg, body) {
+    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
+    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
+    function verb(n) { return function (v) { return step([n, v]); }; }
+    function step(op) {
+        if (f) throw new TypeError("Generator is already executing.");
+        while (_) try {
+            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
+            if (y = 0, t) op = [op[0] & 2, t.value];
+            switch (op[0]) {
+                case 0: case 1: t = op; break;
+                case 4: _.label++; return { value: op[1], done: false };
+                case 5: _.label++; y = op[1]; op = [0]; continue;
+                case 7: op = _.ops.pop(); _.trys.pop(); continue;
+                default:
+                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
+                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
+                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
+                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
+                    if (t[2]) _.ops.pop();
+                    _.trys.pop(); continue;
             }
-          }
-        }, _callee2, this);
-      }));
-
-      function getRegions(_x3) {
-        return _getRegions.apply(this, arguments);
-      }
-
-      return getRegions;
-    }()
-  }, {
-    key: "getHeader",
-    value: function () {
-      var _getHeader = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3() {
-        var _this2 = this;
-
-        var loc;
-        return _regenerator.default.wrap(function _callee3$(_context3) {
-          while (1) {
-            switch (_context3.prev = _context3.next) {
-              case 0:
-                if (!this.header) {
-                  _context3.next = 2;
-                  break;
+            op = body.call(thisArg, _);
+        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
+        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
+    }
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var indexedfasta_1 = require("@gmod/indexedfasta");
+var BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
+var io_1 = require("@jbrowse/core/util/io");
+var rxjs_1 = require("@jbrowse/core/util/rxjs");
+var util_1 = require("@jbrowse/core/util");
+var abortable_promise_cache_1 = __importDefault(require("abortable-promise-cache"));
+var QuickLRU_1 = __importDefault(require("@jbrowse/core/util/QuickLRU"));
+var default_1 = /** @class */ (function (_super) {
+    __extends(default_1, _super);
+    function default_1(config, getSubAdapter, pluginManager) {
+        var _this = _super.call(this, config, getSubAdapter, pluginManager) || this;
+        _this.seqCache = new abortable_promise_cache_1.default({
+            cache: new QuickLRU_1.default({ maxSize: 200 }),
+            fill: function (args, signal) { return __awaiter(_this, void 0, void 0, function () {
+                var refName, start, end;
+                return __generator(this, function (_a) {
+                    refName = args.refName, start = args.start, end = args.end;
+                    return [2 /*return*/, this.fasta.getSequence(refName, start, end, __assign(__assign({}, args), { signal: signal }))];
+                });
+            }); },
+        });
+        var fastaLocation = _this.getConf('fastaLocation');
+        var faiLocation = _this.getConf('faiLocation');
+        var fastaOpts = {
+            fasta: (0, io_1.openLocation)(fastaLocation, _this.pluginManager),
+            fai: (0, io_1.openLocation)(faiLocation, _this.pluginManager),
+        };
+        _this.fasta = new indexedfasta_1.IndexedFasta(fastaOpts);
+        return _this;
+    }
+    default_1.prototype.getRefNames = function (opts) {
+        return this.fasta.getSequenceNames(opts);
+    };
+    default_1.prototype.getRegions = function (opts) {
+        return __awaiter(this, void 0, void 0, function () {
+            var seqSizes;
+            return __generator(this, function (_a) {
+                switch (_a.label) {
+                    case 0: return [4 /*yield*/, this.fasta.getSequenceSizes(opts)];
+                    case 1:
+                        seqSizes = _a.sent();
+                        return [2 /*return*/, Object.keys(seqSizes).map(function (refName) { return ({
+                                refName: refName,
+                                start: 0,
+                                end: seqSizes[refName],
+                            }); })];
+                }
+            });
+        });
+    };
+    default_1.prototype.getHeader = function () {
+        return __awaiter(this, void 0, void 0, function () {
+            var loc;
+            var _this = this;
+            return __generator(this, function (_a) {
+                if (this.header) {
+                    return [2 /*return*/, this.header];
                 }
-
-                return _context3.abrupt("return", this.header);
-
-              case 2:
                 loc = this.getConf('metadataLocation');
-
-                if (!(loc.uri === '' || loc.uri === '/path/to/fa.metadata.yaml')) {
-                  _context3.next = 5;
-                  break;
+                if (loc.uri === '' || loc.uri === '/path/to/fa.metadata.yaml') {
+                    return [2 /*return*/, null];
                 }
-
-                return _context3.abrupt("return", null);
-
-              case 5:
-                this.header = (0, _io.openLocation)(loc).readFile('utf8').catch(function (e) {
-                  _this2.header = undefined;
-                  throw e;
+                this.header = (0, io_1.openLocation)(loc)
+                    .readFile('utf8')
+                    .catch(function (e) {
+                    _this.header = undefined;
+                    throw e;
                 });
-                return _context3.abrupt("return", this.header);
-
-              case 7:
-              case "end":
-                return _context3.stop();
-            }
-          }
-        }, _callee3, this);
-      }));
-
-      function getHeader() {
-        return _getHeader.apply(this, arguments);
-      }
-
-      return getHeader;
-    }()
-  }, {
-    key: "getFeatures",
-    value: function getFeatures(region, opts) {
-      var _this3 = this;
-
-      var refName = region.refName,
-          start = region.start,
-          end = region.end;
-      return (0, _rxjs.ObservableCreate)( /*#__PURE__*/function () {
-        var _ref = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4(observer) {
-          var size, regionEnd, chunks, chunkSize, s, e, chunkStart, r, seq;
-          return _regenerator.default.wrap(function _callee4$(_context4) {
-            while (1) {
-              switch (_context4.prev = _context4.next) {
-                case 0:
-                  _context4.next = 2;
-                  return _this3.fasta.getSequenceSize(refName, opts);
-
-                case 2:
-                  size = _context4.sent;
-                  regionEnd = size !== undefined ? Math.min(size, end) : end;
-                  chunks = [];
-                  chunkSize = 128000;
-                  s = start - start % chunkSize;
-                  e = end + (chunkSize - end % chunkSize);
-
-                  for (chunkStart = s; chunkStart < e; chunkStart += chunkSize) {
-                    r = {
-                      refName: refName,
-                      start: chunkStart,
-                      end: chunkStart + chunkSize
-                    };
-                    chunks.push(_this3.seqCache.get(JSON.stringify(r), r, opts === null || opts === void 0 ? void 0 : opts.signal));
-                  }
-
-                  _context4.next = 11;
-                  return Promise.all(chunks);
-
-                case 11:
-                  seq = _context4.sent.join('').slice(start - s).slice(0, end - start);
-
-                  if (seq) {
-                    observer.next(new _util.SimpleFeature({
-                      id: "".concat(refName, " ").concat(start, "-").concat(regionEnd),
-                      data: {
-                        refName: refName,
-                        start: start,
-                        end: regionEnd,
-                        seq: seq
-                      }
-                    }));
-                  }
-
-                  observer.complete();
-
-                case 14:
-                case "end":
-                  return _context4.stop();
-              }
-            }
-          }, _callee4);
-        }));
-
-        return function (_x4) {
-          return _ref.apply(this, arguments);
-        };
-      }());
-    }
+                return [2 /*return*/, this.header];
+            });
+        });
+    };
+    default_1.prototype.getFeatures = function (region, opts) {
+        var _this = this;
+        var refName = region.refName, start = region.start, end = region.end;
+        return (0, rxjs_1.ObservableCreate)(function (observer) { return __awaiter(_this, void 0, void 0, function () {
+            var size, regionEnd, chunks, chunkSize, s, e, chunkStart, r, seq;
+            return __generator(this, function (_a) {
+                switch (_a.label) {
+                    case 0: return [4 /*yield*/, this.fasta.getSequenceSize(refName, opts)];
+                    case 1:
+                        size = _a.sent();
+                        regionEnd = size !== undefined ? Math.min(size, end) : end;
+                        chunks = [];
+                        chunkSize = 128000;
+                        s = start - (start % chunkSize);
+                        e = end + (chunkSize - (end % chunkSize));
+                        for (chunkStart = s; chunkStart < e; chunkStart += chunkSize) {
+                            r = {
+                                refName: refName,
+                                start: chunkStart,
+                                end: chunkStart + chunkSize,
+                            };
+                            chunks.push(this.seqCache.get(JSON.stringify(r), r, opts === null || opts === void 0 ? void 0 : opts.signal));
+                        }
+                        return [4 /*yield*/, Promise.all(chunks)];
+                    case 2:
+                        seq = (_a.sent())
+                            .join('')
+                            .slice(start - s)
+                            .slice(0, end - start);
+                        if (seq) {
+                            observer.next(new util_1.SimpleFeature({
+                                id: "".concat(refName, " ").concat(start, "-").concat(regionEnd),
+                                data: { refName: refName, start: start, end: regionEnd, seq: seq },
+                            }));
+                        }
+                        observer.complete();
+                        return [2 /*return*/];
+                }
+            });
+        }); });
+    };
     /**
      * called to provide a hint that data tied to a certain region
      * will not be needed for the forseeable future and can be purged
      * from caches, etc
      */
-
-  }, {
-    key: "freeResources",
-    value: function
-      /* { region } */
-    freeResources() {}
-  }]);
-  return _default;
-}(_BaseAdapter.BaseSequenceAdapter);
-
-exports.default = _default;
+    default_1.prototype.freeResources = function ( /* { region } */) { };
+    return default_1;
+}(BaseAdapter_1.BaseSequenceAdapter));
+exports.default = default_1;
+//# sourceMappingURL=IndexedFastaAdapter.js.map

package/dist/IndexedFastaAdapter/IndexedFastaAdapter.js.map

@@ -0,0 +1 @@
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package/dist/IndexedFastaAdapter/configSchema.js

@@ -1,37 +1,22 @@
 "use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-
-var _configuration = require("@jbrowse/core/configuration");
-
-var _default = (0, _configuration.ConfigurationSchema)('IndexedFastaAdapter', {
-  fastaLocation: {
-    type: 'fileLocation',
-    defaultValue: {
-      uri: '/path/to/seq.fa',
-      locationType: 'UriLocation'
-    }
-  },
-  faiLocation: {
-    type: 'fileLocation',
-    defaultValue: {
-      uri: '/path/to/seq.fa.fai',
-      locationType: 'UriLocation'
-    }
-  },
-  metadataLocation: {
-    description: 'Optional metadata file',
-    type: 'fileLocation',
-    defaultValue: {
-      uri: '/path/to/fa.metadata.yaml',
-      locationType: 'UriLocation'
-    }
-  }
-}, {
-  explicitlyTyped: true
-});
-
-exports.default = _default;
+Object.defineProperty(exports, "__esModule", { value: true });
+var configuration_1 = require("@jbrowse/core/configuration");
+exports.default = (0, configuration_1.ConfigurationSchema)('IndexedFastaAdapter', {
+    fastaLocation: {
+        type: 'fileLocation',
+        defaultValue: { uri: '/path/to/seq.fa', locationType: 'UriLocation' },
+    },
+    faiLocation: {
+        type: 'fileLocation',
+        defaultValue: { uri: '/path/to/seq.fa.fai', locationType: 'UriLocation' },
+    },
+    metadataLocation: {
+        description: 'Optional metadata file',
+        type: 'fileLocation',
+        defaultValue: {
+            uri: '/path/to/fa.metadata.yaml',
+            locationType: 'UriLocation',
+        },
+    },
+}, { explicitlyTyped: true });
+//# sourceMappingURL=configSchema.js.map

package/dist/IndexedFastaAdapter/configSchema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/IndexedFastaAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,6DAAiE;AAEjE,kBAAe,IAAA,mCAAmB,EAChC,qBAAqB,EACrB;IACE,aAAa,EAAE;QACb,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,iBAAiB,EAAE,YAAY,EAAE,aAAa,EAAE;KACtE;IACD,WAAW,EAAE;QACX,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,qBAAqB,EAAE,YAAY,EAAE,aAAa,EAAE;KAC1E;IACD,gBAAgB,EAAE;QAChB,WAAW,EAAE,wBAAwB;QACrC,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE;YACZ,GAAG,EAAE,2BAA2B;YAChC,YAAY,EAAE,aAAa;SAC5B;KACF;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA"}

package/dist/IndexedFastaAdapter/index.js

@@ -1,15 +1,9 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-Object.defineProperty(exports, "configSchema", {
-  enumerable: true,
-  get: function get() {
-    return _configSchema.default;
-  }
-});
-
-var _configSchema = _interopRequireDefault(require("./configSchema"));
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.configSchema = void 0;
+var configSchema_1 = require("./configSchema");
+Object.defineProperty(exports, "configSchema", { enumerable: true, get: function () { return __importDefault(configSchema_1).default; } });
+//# sourceMappingURL=index.js.map

package/dist/IndexedFastaAdapter/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/IndexedFastaAdapter/index.ts"],"names":[],"mappings":";;;;;;AAAA,+CAAwD;AAA/C,6HAAA,OAAO,OAAgB"}

package/dist/LinearReferenceSequenceDisplay/configSchema.js

@@ -1,18 +1,7 @@
 "use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
+Object.defineProperty(exports, "__esModule", { value: true });
 exports.configSchema = void 0;
-
-var _configuration = require("@jbrowse/core/configuration");
-
-var _DivSequenceRenderer = require("../DivSequenceRenderer");
-
-var configSchema = (0, _configuration.ConfigurationSchema)('LinearReferenceSequenceDisplay', {
-  renderer: _DivSequenceRenderer.configSchema
-}, {
-  explicitIdentifier: 'displayId',
-  explicitlyTyped: true
-});
-exports.configSchema = configSchema;
+var configuration_1 = require("@jbrowse/core/configuration");
+var DivSequenceRenderer_1 = require("../DivSequenceRenderer");
+exports.configSchema = (0, configuration_1.ConfigurationSchema)('LinearReferenceSequenceDisplay', { renderer: DivSequenceRenderer_1.configSchema }, { explicitIdentifier: 'displayId', explicitlyTyped: true });
+//# sourceMappingURL=configSchema.js.map

package/dist/LinearReferenceSequenceDisplay/configSchema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/LinearReferenceSequenceDisplay/configSchema.ts"],"names":[],"mappings":";;;AAAA,6DAAiE;AACjE,8DAAwF;AAE3E,QAAA,YAAY,GAAG,IAAA,mCAAmB,EAC7C,gCAAgC,EAChC,EAAE,QAAQ,EAAE,kCAA+B,EAAE,EAC7C,EAAE,kBAAkB,EAAE,WAAW,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA"}

package/dist/LinearReferenceSequenceDisplay/index.js

@@ -1,21 +1,8 @@
 "use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-Object.defineProperty(exports, "configSchema", {
-  enumerable: true,
-  get: function get() {
-    return _configSchema.configSchema;
-  }
-});
-Object.defineProperty(exports, "modelFactory", {
-  enumerable: true,
-  get: function get() {
-    return _model.modelFactory;
-  }
-});
-
-var _configSchema = require("./configSchema");
-
-var _model = require("./model");
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.modelFactory = exports.configSchema = void 0;
+var configSchema_1 = require("./configSchema");
+Object.defineProperty(exports, "configSchema", { enumerable: true, get: function () { return configSchema_1.configSchema; } });
+var model_1 = require("./model");
+Object.defineProperty(exports, "modelFactory", { enumerable: true, get: function () { return model_1.modelFactory; } });
+//# sourceMappingURL=index.js.map

package/dist/LinearReferenceSequenceDisplay/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearReferenceSequenceDisplay/index.ts"],"names":[],"mappings":";;;AAAA,+CAA6C;AAApC,4GAAA,YAAY,OAAA;AACrB,iCAAsC;AAA7B,qGAAA,YAAY,OAAA"}