@jbrowse/plugin-sequence 1.7.11 → 2.0.0

package/dist/index.js

@@ -1,327 +1,270 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _typeof = require("@babel/runtime/helpers/typeof");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
+var __extends = (this && this.__extends) || (function () {
+    var extendStatics = function (d, b) {
+        extendStatics = Object.setPrototypeOf ||
+            ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
+            function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
+        return extendStatics(d, b);
+    };
+    return function (d, b) {
+        if (typeof b !== "function" && b !== null)
+            throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
+        extendStatics(d, b);
+        function __() { this.constructor = d; }
+        d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
+    };
+})();
+var __assign = (this && this.__assign) || function () {
+    __assign = Object.assign || function(t) {
+        for (var s, i = 1, n = arguments.length; i < n; i++) {
+            s = arguments[i];
+            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
+                t[p] = s[p];
+        }
+        return t;
+    };
+    return __assign.apply(this, arguments);
+};
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
 });
-exports.default = void 0;
-
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
-
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
-
-var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
-
-var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
-
-var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
-
-var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _AdapterType = _interopRequireDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
-
-var _models = require("@jbrowse/core/pluggableElementTypes/models");
-
-var _FeatureRendererType2 = _interopRequireDefault(require("@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType"));
-
-var _TrackType = _interopRequireDefault(require("@jbrowse/core/pluggableElementTypes/TrackType"));
-
-var _Plugin2 = _interopRequireDefault(require("@jbrowse/core/Plugin"));
-
-var _pluginLinearGenomeView = require("@jbrowse/plugin-linear-genome-view");
-
-var _tracks = require("@jbrowse/core/util/tracks");
-
-var _BgzipFastaAdapter = require("./BgzipFastaAdapter");
-
-var _ChromSizesAdapter = require("./ChromSizesAdapter");
-
-var _DivSequenceRenderer = require("./DivSequenceRenderer");
-
-var _IndexedFastaAdapter = require("./IndexedFastaAdapter");
-
-var _LinearReferenceSequenceDisplay = require("./LinearReferenceSequenceDisplay");
-
-var _TwoBitAdapter = require("./TwoBitAdapter");
-
-var _GCContentAdapter = _interopRequireDefault(require("./GCContentAdapter"));
-
-var _referenceSeqTrackConfig = require("./referenceSeqTrackConfig");
-
-function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
-
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
-
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
-
-function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
-
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
+var models_1 = require("@jbrowse/core/pluggableElementTypes/models");
+var FeatureRendererType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType"));
+var TrackType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/TrackType"));
+var Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
+var plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
+var tracks_1 = require("@jbrowse/core/util/tracks");
+var BgzipFastaAdapter_1 = require("./BgzipFastaAdapter");
+var ChromSizesAdapter_1 = require("./ChromSizesAdapter");
+var DivSequenceRenderer_1 = require("./DivSequenceRenderer");
+var IndexedFastaAdapter_1 = require("./IndexedFastaAdapter");
+var LinearReferenceSequenceDisplay_1 = require("./LinearReferenceSequenceDisplay");
+var TwoBitAdapter_1 = require("./TwoBitAdapter");
+var GCContentAdapter_1 = __importDefault(require("./GCContentAdapter"));
+var referenceSeqTrackConfig_1 = require("./referenceSeqTrackConfig");
 /* adjust in both directions */
-var DivSequenceRenderer = /*#__PURE__*/function (_FeatureRendererType) {
-  (0, _inherits2.default)(DivSequenceRenderer, _FeatureRendererType);
-
-  var _super = _createSuper(DivSequenceRenderer);
-
-  function DivSequenceRenderer() {
-    var _this;
-
-    (0, _classCallCheck2.default)(this, DivSequenceRenderer);
-
-    for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
-      args[_key] = arguments[_key];
-    }
-
-    _this = _super.call.apply(_super, [this].concat(args));
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "supportsSVG", true);
-    return _this;
-  }
-
-  (0, _createClass2.default)(DivSequenceRenderer, [{
-    key: "getExpandedRegion",
-    value: function getExpandedRegion(region) {
-      return _objectSpread(_objectSpread({}, region), {}, {
-        start: Math.max(region.start - 3, 0),
-        end: region.end + 3
-      });
+var DivSequenceRenderer = /** @class */ (function (_super) {
+    __extends(DivSequenceRenderer, _super);
+    function DivSequenceRenderer() {
+        var _this = _super !== null && _super.apply(this, arguments) || this;
+        _this.supportsSVG = true;
+        return _this;
     }
-  }]);
-  return DivSequenceRenderer;
-}(_FeatureRendererType2.default);
-
-var SequencePlugin = /*#__PURE__*/function (_Plugin) {
-  (0, _inherits2.default)(SequencePlugin, _Plugin);
-
-  var _super2 = _createSuper(SequencePlugin);
-
-  function SequencePlugin() {
-    var _this2;
-
-    (0, _classCallCheck2.default)(this, SequencePlugin);
-
-    for (var _len2 = arguments.length, args = new Array(_len2), _key2 = 0; _key2 < _len2; _key2++) {
-      args[_key2] = arguments[_key2];
+    DivSequenceRenderer.prototype.getExpandedRegion = function (region) {
+        return __assign(__assign({}, region), { start: Math.max(region.start - 3, 0), end: region.end + 3 });
+    };
+    return DivSequenceRenderer;
+}(FeatureRendererType_1.default));
+var SequencePlugin = /** @class */ (function (_super) {
+    __extends(SequencePlugin, _super);
+    function SequencePlugin() {
+        var _this = _super !== null && _super.apply(this, arguments) || this;
+        _this.name = 'SequencePlugin';
+        return _this;
     }
-
-    _this2 = _super2.call.apply(_super2, [this].concat(args));
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this2), "name", 'SequencePlugin');
-    return _this2;
-  }
-
-  (0, _createClass2.default)(SequencePlugin, [{
-    key: "install",
-    value: function install(pluginManager) {
-      pluginManager.addAdapterType(function () {
-        return new _AdapterType.default({
-          name: 'TwoBitAdapter',
-          configSchema: _TwoBitAdapter.configSchema,
-          adapterMetadata: {
-            category: null,
-            hiddenFromGUI: true,
-            displayName: null,
-            description: null
-          },
-          getAdapterClass: function getAdapterClass() {
-            return Promise.resolve().then(function () {
-              return _interopRequireWildcard(require('./TwoBitAdapter/TwoBitAdapter'));
-            }).then(function (r) {
-              return r.default;
+    SequencePlugin.prototype.install = function (pluginManager) {
+        pluginManager.addAdapterType(function () {
+            return new AdapterType_1.default({
+                name: 'TwoBitAdapter',
+                configSchema: TwoBitAdapter_1.configSchema,
+                adapterMetadata: {
+                    category: null,
+                    hiddenFromGUI: true,
+                    displayName: null,
+                    description: null,
+                },
+                getAdapterClass: function () {
+                    return Promise.resolve().then(function () { return __importStar(require('./TwoBitAdapter/TwoBitAdapter')); }).then(function (r) { return r.default; });
+                },
             });
-          }
         });
-      });
-      pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', function (adapterGuesser) {
-        return function (file, index, adapterHint) {
-          var regexGuess = /\.2bit$/i;
-          var adapterName = 'TwoBitAdapter';
-          var fileName = (0, _tracks.getFileName)(file);
-          var obj = {
-            type: adapterName,
-            twoBitLocation: file
-          };
-
-          if (regexGuess.test(fileName) && !adapterHint) {
-            return obj;
-          } else if (adapterHint === adapterName) {
-            return obj;
-          }
-
-          return adapterGuesser(file, index, adapterHint);
-        };
-      });
-      pluginManager.addToExtensionPoint('Core-guessTrackTypeForLocation', function (trackTypeGuesser) {
-        return function (adapterName) {
-          if (adapterName === 'TwoBitAdapter') {
-            return 'ReferenceSequenceTrack';
-          }
-
-          return trackTypeGuesser(adapterName);
-        };
-      });
-      pluginManager.addAdapterType(function () {
-        return new _AdapterType.default({
-          name: 'ChromSizesAdapter',
-          configSchema: _ChromSizesAdapter.configSchema,
-          adapterMetadata: {
-            category: null,
-            hiddenFromGUI: true,
-            displayName: null,
-            description: null
-          },
-          getAdapterClass: function getAdapterClass() {
-            return Promise.resolve().then(function () {
-              return _interopRequireWildcard(require('./ChromSizesAdapter/ChromSizesAdapter'));
-            }).then(function (r) {
-              return r.default;
+        pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', function (adapterGuesser) {
+            return function (file, index, adapterHint) {
+                var regexGuess = /\.2bit$/i;
+                var adapterName = 'TwoBitAdapter';
+                var fileName = (0, tracks_1.getFileName)(file);
+                var obj = {
+                    type: adapterName,
+                    twoBitLocation: file,
+                };
+                if (regexGuess.test(fileName) && !adapterHint) {
+                    return obj;
+                }
+                else if (adapterHint === adapterName) {
+                    return obj;
+                }
+                return adapterGuesser(file, index, adapterHint);
+            };
+        });
+        pluginManager.addToExtensionPoint('Core-guessTrackTypeForLocation', function (trackTypeGuesser) {
+            return function (adapterName) {
+                if (adapterName === 'TwoBitAdapter') {
+                    return 'ReferenceSequenceTrack';
+                }
+                return trackTypeGuesser(adapterName);
+            };
+        });
+        pluginManager.addAdapterType(function () {
+            return new AdapterType_1.default({
+                name: 'ChromSizesAdapter',
+                configSchema: ChromSizesAdapter_1.configSchema,
+                adapterMetadata: {
+                    category: null,
+                    hiddenFromGUI: true,
+                    displayName: null,
+                    description: null,
+                },
+                getAdapterClass: function () {
+                    return Promise.resolve().then(function () { return __importStar(require('./ChromSizesAdapter/ChromSizesAdapter')); }).then(function (r) { return r.default; });
+                },
             });
-          }
         });
-      });
-      pluginManager.addAdapterType(function () {
-        return new _AdapterType.default({
-          name: 'IndexedFastaAdapter',
-          configSchema: _IndexedFastaAdapter.configSchema,
-          adapterMetadata: {
-            category: null,
-            hiddenFromGUI: true,
-            displayName: null,
-            description: null
-          },
-          getAdapterClass: function getAdapterClass() {
-            return Promise.resolve().then(function () {
-              return _interopRequireWildcard(require('./IndexedFastaAdapter/IndexedFastaAdapter'));
-            }).then(function (r) {
-              return r.default;
+        pluginManager.addAdapterType(function () {
+            return new AdapterType_1.default({
+                name: 'IndexedFastaAdapter',
+                configSchema: IndexedFastaAdapter_1.configSchema,
+                adapterMetadata: {
+                    category: null,
+                    hiddenFromGUI: true,
+                    displayName: null,
+                    description: null,
+                },
+                getAdapterClass: function () {
+                    return Promise.resolve().then(function () { return __importStar(require('./IndexedFastaAdapter/IndexedFastaAdapter')); }).then(function (r) { return r.default; });
+                },
             });
-          }
         });
-      });
-      pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', function (adapterGuesser) {
-        return function (file, index, adapterHint) {
-          var regexGuess = /\.(fa|fasta|fas|fna|mfa)$/i;
-          var adapterName = 'IndexedFastaAdapter';
-          var fileName = (0, _tracks.getFileName)(file);
-          var obj = {
-            type: adapterName,
-            fastaLocation: file,
-            faiLocation: index || (0, _tracks.makeIndex)(file, '.fai')
-          };
-
-          if (regexGuess.test(fileName) && !adapterHint) {
-            return obj;
-          } else if (adapterHint === adapterName) {
-            return obj;
-          }
-
-          return adapterGuesser(file, index, adapterHint);
-        };
-      });
-      pluginManager.addToExtensionPoint('Core-guessTrackTypeForLocation', function (trackTypeGuesser) {
-        return function (adapterName) {
-          if (adapterName === 'IndexedFastaAdapter') {
-            return 'ReferenceSequenceTrack';
-          }
-
-          return trackTypeGuesser(adapterName);
-        };
-      });
-      pluginManager.addAdapterType(function () {
-        return new _AdapterType.default({
-          name: 'BgzipFastaAdapter',
-          configSchema: _BgzipFastaAdapter.configSchema,
-          adapterMetadata: {
-            category: null,
-            hiddenFromGUI: true,
-            displayName: null,
-            description: null
-          },
-          getAdapterClass: function getAdapterClass() {
-            return Promise.resolve().then(function () {
-              return _interopRequireWildcard(require('./BgzipFastaAdapter/BgzipFastaAdapter'));
-            }).then(function (r) {
-              return r.default;
+        pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', function (adapterGuesser) {
+            return function (file, index, adapterHint) {
+                var regexGuess = /\.(fa|fasta|fas|fna|mfa)$/i;
+                var adapterName = 'IndexedFastaAdapter';
+                var fileName = (0, tracks_1.getFileName)(file);
+                var obj = {
+                    type: adapterName,
+                    fastaLocation: file,
+                    faiLocation: index || (0, tracks_1.makeIndex)(file, '.fai'),
+                };
+                if (regexGuess.test(fileName) && !adapterHint) {
+                    return obj;
+                }
+                else if (adapterHint === adapterName) {
+                    return obj;
+                }
+                return adapterGuesser(file, index, adapterHint);
+            };
+        });
+        pluginManager.addToExtensionPoint('Core-guessTrackTypeForLocation', function (trackTypeGuesser) {
+            return function (adapterName) {
+                if (adapterName === 'IndexedFastaAdapter') {
+                    return 'ReferenceSequenceTrack';
+                }
+                return trackTypeGuesser(adapterName);
+            };
+        });
+        pluginManager.addAdapterType(function () {
+            return new AdapterType_1.default({
+                name: 'BgzipFastaAdapter',
+                configSchema: BgzipFastaAdapter_1.configSchema,
+                adapterMetadata: {
+                    category: null,
+                    hiddenFromGUI: true,
+                    displayName: null,
+                    description: null,
+                },
+                getAdapterClass: function () {
+                    return Promise.resolve().then(function () { return __importStar(require('./BgzipFastaAdapter/BgzipFastaAdapter')); }).then(function (r) { return r.default; });
+                },
             });
-          }
         });
-      });
-      pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', function (adapterGuesser) {
-        return function (file, index, adapterHint) {
-          var regexGuess = /\.(fa|fasta|fas|fna|mfa)\.b?gz$/i;
-          var adapterName = 'BgzipFastaAdapter';
-          var fileName = (0, _tracks.getFileName)(file);
-          var obj = {
-            type: adapterName,
-            faiLocation: (0, _tracks.makeIndex)(file, '.fai'),
-            gziLocation: (0, _tracks.makeIndex)(file, '.gzi')
-          };
-
-          if (regexGuess.test(fileName) && !adapterHint) {
-            return obj;
-          } else if (adapterHint === adapterName) {
-            return obj;
-          }
-
-          return adapterGuesser(file, index, adapterHint);
-        };
-      });
-      pluginManager.addToExtensionPoint('Core-guessTrackTypeForLocation', function (trackTypeGuesser) {
-        return function (adapterName) {
-          if (adapterName === 'BgzipFastaAdapter') {
-            return 'ReferenceSequenceTrack';
-          }
-
-          return trackTypeGuesser(adapterName);
-        };
-      });
-      pluginManager.addAdapterType(function () {
-        return new _AdapterType.default(_objectSpread({
-          name: 'GCContentAdapter',
-          adapterMetadata: {
-            category: null,
-            hiddenFromGUI: true,
-            displayName: null,
-            description: null
-          }
-        }, pluginManager.load(_GCContentAdapter.default)));
-      });
-      pluginManager.addTrackType(function () {
-        var configSchema = (0, _referenceSeqTrackConfig.createReferenceSeqTrackConfig)(pluginManager);
-        return new _TrackType.default({
-          name: 'ReferenceSequenceTrack',
-          configSchema: configSchema,
-          stateModel: (0, _models.createBaseTrackModel)(pluginManager, 'ReferenceSequenceTrack', configSchema)
+        pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', function (adapterGuesser) {
+            return function (file, index, adapterHint) {
+                var regexGuess = /\.(fa|fasta|fas|fna|mfa)\.b?gz$/i;
+                var adapterName = 'BgzipFastaAdapter';
+                var fileName = (0, tracks_1.getFileName)(file);
+                var obj = {
+                    type: adapterName,
+                    faiLocation: (0, tracks_1.makeIndex)(file, '.fai'),
+                    gziLocation: (0, tracks_1.makeIndex)(file, '.gzi'),
+                };
+                if (regexGuess.test(fileName) && !adapterHint) {
+                    return obj;
+                }
+                else if (adapterHint === adapterName) {
+                    return obj;
+                }
+                return adapterGuesser(file, index, adapterHint);
+            };
         });
-      });
-      pluginManager.addDisplayType(function () {
-        var stateModel = (0, _LinearReferenceSequenceDisplay.modelFactory)(_LinearReferenceSequenceDisplay.configSchema);
-        return {
-          name: 'LinearReferenceSequenceDisplay',
-          configSchema: _LinearReferenceSequenceDisplay.configSchema,
-          stateModel: stateModel,
-          trackType: 'ReferenceSequenceTrack',
-          viewType: 'LinearGenomeView',
-          ReactComponent: _pluginLinearGenomeView.BaseLinearDisplayComponent
-        };
-      });
-      pluginManager.addRendererType(function () {
-        return new DivSequenceRenderer({
-          name: 'DivSequenceRenderer',
-          ReactComponent: _DivSequenceRenderer.ReactComponent,
-          configSchema: _DivSequenceRenderer.configSchema,
-          pluginManager: pluginManager
+        pluginManager.addToExtensionPoint('Core-guessTrackTypeForLocation', function (trackTypeGuesser) {
+            return function (adapterName) {
+                if (adapterName === 'BgzipFastaAdapter') {
+                    return 'ReferenceSequenceTrack';
+                }
+                return trackTypeGuesser(adapterName);
+            };
         });
-      });
-    }
-  }]);
-  return SequencePlugin;
-}(_Plugin2.default);
-
-exports.default = SequencePlugin;
+        pluginManager.addAdapterType(function () {
+            return new AdapterType_1.default(__assign({ name: 'GCContentAdapter', adapterMetadata: {
+                    category: null,
+                    hiddenFromGUI: true,
+                    displayName: null,
+                    description: null,
+                } }, pluginManager.load(GCContentAdapter_1.default)));
+        });
+        pluginManager.addTrackType(function () {
+            var configSchema = (0, referenceSeqTrackConfig_1.createReferenceSeqTrackConfig)(pluginManager);
+            return new TrackType_1.default({
+                name: 'ReferenceSequenceTrack',
+                configSchema: configSchema,
+                stateModel: (0, models_1.createBaseTrackModel)(pluginManager, 'ReferenceSequenceTrack', configSchema),
+            });
+        });
+        pluginManager.addDisplayType(function () {
+            var stateModel = (0, LinearReferenceSequenceDisplay_1.modelFactory)(LinearReferenceSequenceDisplay_1.configSchema);
+            return {
+                name: 'LinearReferenceSequenceDisplay',
+                configSchema: LinearReferenceSequenceDisplay_1.configSchema,
+                stateModel: stateModel,
+                trackType: 'ReferenceSequenceTrack',
+                viewType: 'LinearGenomeView',
+                ReactComponent: plugin_linear_genome_view_1.BaseLinearDisplayComponent,
+            };
+        });
+        pluginManager.addRendererType(function () {
+            return new DivSequenceRenderer({
+                name: 'DivSequenceRenderer',
+                ReactComponent: DivSequenceRenderer_1.ReactComponent,
+                configSchema: DivSequenceRenderer_1.configSchema,
+                pluginManager: pluginManager,
+            });
+        });
+    };
+    return SequencePlugin;
+}(Plugin_1.default));
+exports.default = SequencePlugin;
+//# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -0,0 +1 @@
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