@jbrowse/plugin-sequence 1.7.10 → 2.0.1

package/dist/LinearReferenceSequenceDisplay/model.d.ts

@@ -1,5 +1,5 @@
 /// <reference types="react" />
-import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration/configurationSchema';
+import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
 export declare function modelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("mobx-state-tree").ISimpleType<string>;
@@ -66,11 +66,11 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
     error: unknown;
 } & {
     readonly RenderingComponent: import("react").FC<{
-        model: import("mobx-state-tree").ModelInstanceTypeProps<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        }> & {
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
@@ -85,11 +85,11 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
         blockState?: Record<string, any> | undefined;
     }>;
     readonly DisplayBlurb: import("react").FC<{
-        model: import("mobx-state-tree").ModelInstanceTypeProps<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        }> & {
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
@@ -122,7 +122,7 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
-    readonly blockType: "staticBlocks" | "dynamicBlocks";
+    readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
     readonly renderDelay: number;
@@ -175,12 +175,14 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     contextMenuItems(): {
         label: string;
-        icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
         onClick: () => void;
     }[];
     renderProps(): any;
 } & {
-    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/dist/LinearGenomeView").ExportSvgOptions & {
+    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
         overrideHeight: number;
     }): Promise<JSX.Element>;
 } & {
@@ -199,10 +201,10 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
         onClick: () => void;
     }[];
 }, import("mobx-state-tree")._NotCustomized, {
-    id: string;
     type: string;
-    rpcDriverName: string | undefined;
     height: number;
+    id: string;
+    rpcDriverName: string | undefined;
     userBpPerPxLimit: number | undefined;
     userByteSizeLimit: number | undefined;
 } & import("mobx-state-tree")._NotCustomized>;

package/dist/LinearReferenceSequenceDisplay/model.js

@@ -1,102 +1,91 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.modelFactory = modelFactory;
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _mobxStateTree = require("mobx-state-tree");
-
-var _pluginLinearGenomeView = require("@jbrowse/plugin-linear-genome-view");
-
-var _configuration = require("@jbrowse/core/configuration");
-
-var _util = require("@jbrowse/core/util");
-
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-
-function modelFactory(configSchema) {
-  return _mobxStateTree.types.compose('LinearReferenceSequenceDisplay', _pluginLinearGenomeView.BaseLinearDisplay, _mobxStateTree.types.model({
-    type: _mobxStateTree.types.literal('LinearReferenceSequenceDisplay'),
-    configuration: (0, _configuration.ConfigurationReference)(configSchema),
-    showForward: _mobxStateTree.types.optional(_mobxStateTree.types.boolean, true),
-    showReverse: _mobxStateTree.types.optional(_mobxStateTree.types.boolean, true),
-    showTranslation: _mobxStateTree.types.optional(_mobxStateTree.types.boolean, true),
-    height: 180
-  })).views(function (self) {
-    var superRenderProps = self.renderProps;
-    return {
-      renderProps: function renderProps() {
-        var showForward = self.showForward,
-            showReverse = self.showReverse,
-            showTranslation = self.showTranslation;
-        return _objectSpread(_objectSpread({}, superRenderProps()), {}, {
-          rpcDriverName: self.rpcDriverName,
-          config: self.configuration.renderer,
-          showForward: showForward,
-          showReverse: showReverse,
-          showTranslation: showTranslation
-        });
-      },
-      regionCannotBeRendered: function regionCannotBeRendered() {
-        var view = (0, _util.getContainingView)(self);
-
-        if (view && view.bpPerPx >= 1) {
-          return 'Zoom in to see sequence';
+var __assign = (this && this.__assign) || function () {
+    __assign = Object.assign || function(t) {
+        for (var s, i = 1, n = arguments.length; i < n; i++) {
+            s = arguments[i];
+            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
+                t[p] = s[p];
         }
-
-        return undefined;
-      },
-
-      get rendererTypeName() {
-        return self.configuration.renderer.type;
-      }
-
-    };
-  }).actions(function (self) {
-    return {
-      toggleShowForward: function toggleShowForward() {
-        self.showForward = !self.showForward;
-      },
-      toggleShowReverse: function toggleShowReverse() {
-        self.showReverse = !self.showReverse;
-      },
-      toggleShowTranslation: function toggleShowTranslation() {
-        self.showTranslation = !self.showTranslation;
-      }
+        return t;
     };
-  }).views(function (self) {
-    return {
-      trackMenuItems: function trackMenuItems() {
-        return [{
-          label: 'Show forward',
-          type: 'checkbox',
-          checked: self.showForward,
-          onClick: function onClick() {
-            self.toggleShowForward();
-          }
-        }, {
-          label: 'Show reverse',
-          type: 'checkbox',
-          checked: self.showReverse,
-          onClick: function onClick() {
-            self.toggleShowReverse();
-          }
-        }, {
-          label: 'Show translation',
-          type: 'checkbox',
-          checked: self.showTranslation,
-          onClick: function onClick() {
-            self.toggleShowTranslation();
-          }
-        }];
-      }
-    };
-  });
-}
+    return __assign.apply(this, arguments);
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.modelFactory = void 0;
+var mobx_state_tree_1 = require("mobx-state-tree");
+var plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
+var configuration_1 = require("@jbrowse/core/configuration");
+var util_1 = require("@jbrowse/core/util");
+function modelFactory(configSchema) {
+    return mobx_state_tree_1.types
+        .compose('LinearReferenceSequenceDisplay', plugin_linear_genome_view_1.BaseLinearDisplay, mobx_state_tree_1.types.model({
+        type: mobx_state_tree_1.types.literal('LinearReferenceSequenceDisplay'),
+        configuration: (0, configuration_1.ConfigurationReference)(configSchema),
+        showForward: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.boolean, true),
+        showReverse: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.boolean, true),
+        showTranslation: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.boolean, true),
+        height: 180,
+    }))
+        .views(function (self) {
+        var superRenderProps = self.renderProps;
+        return {
+            renderProps: function () {
+                var showForward = self.showForward, showReverse = self.showReverse, showTranslation = self.showTranslation;
+                return __assign(__assign({}, superRenderProps()), { rpcDriverName: self.rpcDriverName, config: self.configuration.renderer, showForward: showForward, showReverse: showReverse, showTranslation: showTranslation });
+            },
+            regionCannotBeRendered: function ( /* region */) {
+                var view = (0, util_1.getContainingView)(self);
+                if (view && view.bpPerPx >= 1) {
+                    return 'Zoom in to see sequence';
+                }
+                return undefined;
+            },
+            get rendererTypeName() {
+                return self.configuration.renderer.type;
+            },
+        };
+    })
+        .actions(function (self) { return ({
+        toggleShowForward: function () {
+            self.showForward = !self.showForward;
+        },
+        toggleShowReverse: function () {
+            self.showReverse = !self.showReverse;
+        },
+        toggleShowTranslation: function () {
+            self.showTranslation = !self.showTranslation;
+        },
+    }); })
+        .views(function (self) { return ({
+        trackMenuItems: function () {
+            return [
+                {
+                    label: 'Show forward',
+                    type: 'checkbox',
+                    checked: self.showForward,
+                    onClick: function () {
+                        self.toggleShowForward();
+                    },
+                },
+                {
+                    label: 'Show reverse',
+                    type: 'checkbox',
+                    checked: self.showReverse,
+                    onClick: function () {
+                        self.toggleShowReverse();
+                    },
+                },
+                {
+                    label: 'Show translation',
+                    type: 'checkbox',
+                    checked: self.showTranslation,
+                    onClick: function () {
+                        self.toggleShowTranslation();
+                    },
+                },
+            ];
+        },
+    }); });
+}
+exports.modelFactory = modelFactory;
+//# sourceMappingURL=model.js.map

package/dist/LinearReferenceSequenceDisplay/model.js.map

@@ -0,0 +1 @@
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