@jbrowse/plugin-sequence 1.7.0 → 1.7.1

package/dist/BgzipFastaAdapter/BgzipFastaAdapter.d.ts

@@ -1,7 +1,7 @@
-import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
-import IndexedFasta from '../IndexedFastaAdapter/IndexedFastaAdapter';
-import PluginManager from '@jbrowse/core/PluginManager';
-import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
-export default class extends IndexedFasta {
-    constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
-}
+import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
+import IndexedFasta from '../IndexedFastaAdapter/IndexedFastaAdapter';
+import PluginManager from '@jbrowse/core/PluginManager';
+import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
+export default class extends IndexedFasta {
+    constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
+}

package/dist/BgzipFastaAdapter/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-export default _default;
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default _default;

package/dist/BgzipFastaAdapter/index.d.ts

@@ -1 +1 @@
-export { default as configSchema } from './configSchema';
+export { default as configSchema } from './configSchema';

package/dist/ChromSizesAdapter/ChromSizesAdapter.d.ts

@@ -1,19 +1,19 @@
-import { RegionsAdapter, BaseAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-import { Instance } from 'mobx-state-tree';
-import MyConfigSchema from './configSchema';
-import PluginManager from '@jbrowse/core/PluginManager';
-import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
-export default class extends BaseAdapter implements RegionsAdapter {
-    protected refSeqs: Promise<Record<string, number>>;
-    protected source: string;
-    constructor(config: Instance<typeof MyConfigSchema>, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
-    private init;
-    getRegions(): Promise<{
-        refName: string;
-        start: number;
-        end: number;
-    }[]>;
-    getFeatures(): void;
-    getHeader(): {};
-    freeResources(): void;
-}
+import { RegionsAdapter, BaseAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { Instance } from 'mobx-state-tree';
+import MyConfigSchema from './configSchema';
+import PluginManager from '@jbrowse/core/PluginManager';
+import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
+export default class extends BaseAdapter implements RegionsAdapter {
+    protected refSeqs: Promise<Record<string, number>>;
+    protected source: string;
+    constructor(config: Instance<typeof MyConfigSchema>, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
+    private init;
+    getRegions(): Promise<{
+        refName: string;
+        start: number;
+        end: number;
+    }[]>;
+    getFeatures(): void;
+    getHeader(): {};
+    freeResources(): void;
+}

package/dist/ChromSizesAdapter/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-export default _default;
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default _default;

package/dist/ChromSizesAdapter/index.d.ts

@@ -1 +1 @@
-export { default as configSchema } from './configSchema';
+export { default as configSchema } from './configSchema';

package/dist/DivSequenceRenderer/components/DivSequenceRendering.d.ts

@@ -1,21 +1,21 @@
-/// <reference types="react" />
-import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
-import { Feature } from '@jbrowse/core/util/simpleFeature';
-import { Region } from '@jbrowse/core/util/types';
-interface MyProps {
-    exportSVG?: {
-        rasterizeLayers: boolean;
-    };
-    features: Map<string, Feature>;
-    regions: Region[];
-    bpPerPx: number;
-    config: AnyConfigurationModel;
-    highResolutionScaling: number;
-    theme: any;
-    showForward: boolean;
-    showReverse: boolean;
-    showTranslation: boolean;
-}
-declare function Sequence(props: MyProps): JSX.Element;
-declare const _default: typeof Sequence;
-export default _default;
+/// <reference types="react" />
+import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
+import { Feature } from '@jbrowse/core/util/simpleFeature';
+import { Region } from '@jbrowse/core/util/types';
+interface MyProps {
+    exportSVG?: {
+        rasterizeLayers: boolean;
+    };
+    features: Map<string, Feature>;
+    regions: Region[];
+    bpPerPx: number;
+    config: AnyConfigurationModel;
+    highResolutionScaling: number;
+    theme: any;
+    showForward: boolean;
+    showReverse: boolean;
+    showTranslation: boolean;
+}
+declare function Sequence(props: MyProps): JSX.Element;
+declare const _default: typeof Sequence;
+export default _default;

package/dist/DivSequenceRenderer/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-export default _default;
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default _default;

package/dist/DivSequenceRenderer/index.d.ts

@@ -1,2 +1,2 @@
-export { default as ReactComponent } from './components/DivSequenceRendering';
-export { default as configSchema } from './configSchema';
+export { default as ReactComponent } from './components/DivSequenceRendering';
+export { default as configSchema } from './configSchema';

package/dist/GCContentAdapter/GCContentAdapter.d.ts

@@ -1,23 +1,23 @@
-import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
-import { Region } from '@jbrowse/core/util/types';
-import { Feature } from '@jbrowse/core/util/simpleFeature';
-export default class extends BaseFeatureDataAdapter {
-    private windowSize;
-    private windowDelta;
-    private gcMode;
-    static capabilities: string[];
-    configure(): Promise<BaseFeatureDataAdapter>;
-    getRefNames(): Promise<string[]>;
-    /**
-     * Fetch features for a certain region
-     * @param param -
-     * @returns Observable of Feature objects in the region
-     */
-    getFeatures(query: Region, opts: BaseOptions): import("rxjs").Observable<Feature>;
-    /**
-     * called to provide a hint that data tied to a certain region
-     * will not be needed for the forseeable future and can be purged
-     * from caches, etc
-     */
-    freeResources(): void;
-}
+import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { Region } from '@jbrowse/core/util/types';
+import { Feature } from '@jbrowse/core/util/simpleFeature';
+export default class extends BaseFeatureDataAdapter {
+    private windowSize;
+    private windowDelta;
+    private gcMode;
+    static capabilities: string[];
+    configure(): Promise<BaseFeatureDataAdapter>;
+    getRefNames(): Promise<string[]>;
+    /**
+     * Fetch features for a certain region
+     * @param param -
+     * @returns Observable of Feature objects in the region
+     */
+    getFeatures(query: Region, opts: BaseOptions): import("rxjs").Observable<Feature>;
+    /**
+     * called to provide a hint that data tied to a certain region
+     * will not be needed for the forseeable future and can be purged
+     * from caches, etc
+     */
+    freeResources(): void;
+}

package/dist/GCContentAdapter/configSchema.d.ts

@@ -1,3 +1,3 @@
-import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-export default _default;
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default _default;

package/dist/GCContentAdapter/index.d.ts

@@ -1,6 +1,6 @@
-import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => {
-    configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-    getAdapterClass: () => Promise<typeof import("./GCContentAdapter").default>;
-};
-export default _default;
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => {
+    configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+    getAdapterClass: () => Promise<typeof import("./GCContentAdapter").default>;
+};
+export default _default;

package/dist/IndexedFastaAdapter/IndexedFastaAdapter.d.ts

@@ -1,25 +1,25 @@
-import { IndexedFasta } from '@gmod/indexedfasta';
-import { BaseSequenceAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
-import { NoAssemblyRegion } from '@jbrowse/core/util/types';
-import { Feature } from '@jbrowse/core/util/simpleFeature';
-import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
-import PluginManager from '@jbrowse/core/PluginManager';
-import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
-export default class extends BaseSequenceAdapter {
-    protected fasta: IndexedFasta;
-    private seqCache;
-    constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
-    getRefNames(opts?: BaseOptions): Promise<string[]>;
-    getRegions(opts?: BaseOptions): Promise<{
-        refName: string;
-        start: number;
-        end: number;
-    }[]>;
-    getFeatures(region: NoAssemblyRegion, opts?: BaseOptions): import("rxjs").Observable<Feature>;
-    /**
-     * called to provide a hint that data tied to a certain region
-     * will not be needed for the forseeable future and can be purged
-     * from caches, etc
-     */
-    freeResources(): void;
-}
+import { IndexedFasta } from '@gmod/indexedfasta';
+import { BaseSequenceAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { NoAssemblyRegion } from '@jbrowse/core/util/types';
+import { Feature } from '@jbrowse/core/util/simpleFeature';
+import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
+import PluginManager from '@jbrowse/core/PluginManager';
+import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
+export default class extends BaseSequenceAdapter {
+    protected fasta: IndexedFasta;
+    private seqCache;
+    constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
+    getRefNames(opts?: BaseOptions): Promise<string[]>;
+    getRegions(opts?: BaseOptions): Promise<{
+        refName: string;
+        start: number;
+        end: number;
+    }[]>;
+    getFeatures(region: NoAssemblyRegion, opts?: BaseOptions): import("rxjs").Observable<Feature>;
+    /**
+     * called to provide a hint that data tied to a certain region
+     * will not be needed for the forseeable future and can be purged
+     * from caches, etc
+     */
+    freeResources(): void;
+}

package/dist/IndexedFastaAdapter/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-export default _default;
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default _default;

package/dist/IndexedFastaAdapter/index.d.ts

@@ -1 +1 @@
-export { default as configSchema } from './configSchema';
+export { default as configSchema } from './configSchema';

package/dist/LinearReferenceSequenceDisplay/configSchema.d.ts

@@ -1 +1 @@
-export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;

package/dist/LinearReferenceSequenceDisplay/index.d.ts

@@ -1,2 +1,2 @@
-export { configSchema } from './configSchema';
-export { modelFactory } from './model';
+export { configSchema } from './configSchema';
+export { modelFactory } from './model';